RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 NUBP1P53384 320 aa13.25□□□□□ -0.29
USP49-205ENST00000448078 GSE1Q14687 1217 aa13.23□□□□□ -0.29
USP49-205ENST00000448078 EVX2Q03828 476 aa13.15□□□□□ -0.3
USP49-205ENST00000448078 PHF12Q96QT6 1004 aa13.12□□□□□ -0.31
USP49-205ENST00000448078 PYGBP11216 843 aa13.11□□□□□ -0.31
USP49-205ENST00000448078 ZNF579Q8NAF0 562 aaKnown RBP13.09□□□□□ -0.31
USP49-205ENST00000448078 SP7Q8TDD2 431 aaPredicted RBP13.08□□□□□ -0.32
USP49-205ENST00000448078 CCDC61Q9Y6R9 512 aa13.07□□□□□ -0.32
USP49-205ENST00000448078 ECM2O94769 699 aaPredicted RBP13.04□□□□□ -0.32
USP49-205ENST00000448078 TRIM41Q8WV44 630 aa13.03□□□□□ -0.32
USP49-205ENST00000448078 PCDHB13Q9Y5F0 798 aa13.02□□□□□ -0.33
USP49-205ENST00000448078 MAP3K13O43283 966 aa12.99□□□□□ -0.33
USP49-205ENST00000448078 CLCN6P51797 869 aa12.99□□□□□ -0.33
USP49-205ENST00000448078 AMER1Q5JTC6 1135 aaPredicted RBP12.99□□□□□ -0.33
USP49-205ENST00000448078 KIF12Q96FN5 646 aa12.98□□□□□ -0.33
USP49-205ENST00000448078 GABBR2O75899 941 aa12.97□□□□□ -0.33
USP49-205ENST00000448078 DCAF8L2P0C7V8 631 aa12.95□□□□□ -0.34
USP49-205ENST00000448078 MS4A3Q96HJ5 214 aa12.94□□□□□ -0.34
USP49-205ENST00000448078 GALR2O43603 387 aaPredicted RBP12.92□□□□□ -0.34
USP49-205ENST00000448078 ZNF467Q7Z7K2 595 aaPredicted RBP12.92□□□□□ -0.34
USP49-205ENST00000448078 DCBLD2Q96PD2 775 aa12.92□□□□□ -0.34
USP49-205ENST00000448078 PKD2Q13563 968 aa12.91□□□□□ -0.34
USP49-205ENST00000448078 CHRM1P11229 460 aaPredicted RBP12.9□□□□□ -0.34
USP49-205ENST00000448078 PCDHB8Q9UN66 801 aa12.9□□□□□ -0.34
USP49-205ENST00000448078 SGIP1Q9BQI5 828 aa12.89□□□□□ -0.35
USP49-205ENST00000448078 IFNL1Q8IU54 200 aa12.88□□□□□ -0.35
USP49-205ENST00000448078 RTN4Q9NQC3 1192 aaKnown RBP12.88□□□□□ -0.35
USP49-205ENST00000448078 TAOK2Q9UL54 1235 aa12.86□□□□□ -0.35
USP49-205ENST00000448078 CCDC180Q9P1Z9 1646 aa12.85□□□□□ -0.35
USP49-205ENST00000448078 RIOK3O14730 519 aaKnown RBP12.84□□□□□ -0.35
USP49-205ENST00000448078 RGL2O15211 777 aa12.8□□□□□ -0.36
USP49-205ENST00000448078 GOLGA2Q08379 1002 aa12.79□□□□□ -0.36
USP49-205ENST00000448078 PDAP1Q13442 181 aaKnown RBP12.79□□□□□ -0.36
USP49-205ENST00000448078 TMEM106CQ9BVX2 250 aa12.78□□□□□ -0.36
USP49-205ENST00000448078 PSEN1P49768 467 aa12.77□□□□□ -0.37
USP49-205ENST00000448078 VGFO15240 615 aaPredicted RBP12.76□□□□□ -0.37
USP49-205ENST00000448078 TRPC6Q9Y210 931 aa12.76□□□□□ -0.37
USP49-205ENST00000448078 TIE1P35590 1138 aa12.74□□□□□ -0.37
USP49-205ENST00000448078 RNF25Q96BH1 459 aaPredicted RBP12.74□□□□□ -0.37
USP49-205ENST00000448078 BMP2KQ9NSY1 1161 aaPredicted RBP12.71□□□□□ -0.37
USP49-205ENST00000448078 STK25O00506 426 aa12.7□□□□□ -0.38
USP49-205ENST00000448078 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.69□□□□□ -0.38
USP49-205ENST00000448078 TTLL13PA6NNM8 815 aa12.69□□□□□ -0.38
USP49-205ENST00000448078 ZFP91Q96JP5 570 aaPredicted RBP12.69□□□□□ -0.38
USP49-205ENST00000448078 STK24Q9Y6E0 443 aa12.68□□□□□ -0.38
USP49-205ENST00000448078 ATMINO43313 823 aaPredicted RBP12.66□□□□□ -0.38
USP49-205ENST00000448078 CHGAP10645 457 aaKnown RBP12.66□□□□□ -0.38
USP49-205ENST00000448078 ATN1P54259 1190 aaPredicted RBP12.66□□□□□ -0.38
USP49-205ENST00000448078 MKRN3Q13064 507 aaKnown RBP12.66□□□□□ -0.38
USP49-205ENST00000448078 CABP2Q9NPB3 220 aa12.66□□□□□ -0.38
USP49-205ENST00000448078 TRIM35Q9UPQ4 493 aa12.66□□□□□ -0.38
USP49-205ENST00000448078 ASTLQ6HA08 431 aaPredicted RBP12.64□□□□□ -0.39
USP49-205ENST00000448078 BCL11BQ9C0K0 894 aaPredicted RBP12.64□□□□□ -0.39
USP49-205ENST00000448078 SEC24BO95487 1268 aa12.61□□□□□ -0.39
USP49-205ENST00000448078 POTEIP0CG38 1075 aa12.58□□□□□ -0.4
USP49-205ENST00000448078 SLC39A7Q92504 469 aa12.58□□□□□ -0.4
USP49-205ENST00000448078 METRNQ9UJH8 293 aa12.55□□□□□ -0.4
USP49-205ENST00000448078 C7P10643 843 aa12.54□□□□□ -0.4
USP49-205ENST00000448078 PELP1Q8IZL8 1130 aaKnown RBP12.54□□□□□ -0.4
USP49-205ENST00000448078 RB1CC1Q8TDY2 1594 aa12.54□□□□□ -0.4
USP49-205ENST00000448078 PLCG2P16885 1265 aa12.53□□□□□ -0.4
USP49-205ENST00000448078 EFCAB3Q8N7B9 438 aa12.53□□□□□ -0.4
USP49-205ENST00000448078 HS6ST3Q8IZP7 471 aa12.51□□□□□ -0.41
USP49-205ENST00000448078 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.51□□□□□ -0.41
USP49-205ENST00000448078 IER5LQ5T953 404 aa12.49□□□□□ -0.41
USP49-205ENST00000448078 G3V3G9 751 aa12.46□□□□□ -0.41
USP49-205ENST00000448078 SOX12O15370 315 aa12.44□□□□□ -0.42
USP49-205ENST00000448078 OCEL1Q9H607 264 aa12.44□□□□□ -0.42
USP49-205ENST00000448078 NLRP6P59044 892 aa12.42□□□□□ -0.42
USP49-205ENST00000448078 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.42□□□□□ -0.42
USP49-205ENST00000448078 PHF8Q9UPP1 1060 aa12.41□□□□□ -0.42
USP49-205ENST00000448078 COLQQ9Y215 455 aaPredicted RBP12.39□□□□□ -0.43
USP49-205ENST00000448078 IRX5P78411 483 aaPredicted RBP12.37□□□□□ -0.43
USP49-205ENST00000448078 NACADO15069 1562 aa12.37□□□□□ -0.43
USP49-205ENST00000448078 RYDENQ9NUL5 291 aaKnown RBP12.36□□□□□ -0.43
USP49-205ENST00000448078 BBXQ8WY36 941 aaPredicted RBP12.35□□□□□ -0.43
USP49-205ENST00000448078 L3MBTL3Q96JM7 780 aaPredicted RBP12.33□□□□□ -0.44
USP49-205ENST00000448078 MFRPQ9BY79 579 aa12.32□□□□□ -0.44
USP49-205ENST00000448078 LHX8Q68G74 356 aa12.31□□□□□ -0.44
USP49-205ENST00000448078 CFAP44Q96MT7 982 aa12.3□□□□□ -0.44
USP49-205ENST00000448078 DPY19L2Q6NUT2 758 aa12.29□□□□□ -0.44
USP49-205ENST00000448078 PDCD7Q8N8D1 485 aaKnown RBP12.29□□□□□ -0.44
USP49-205ENST00000448078 C3orf67Q6ZVT6 689 aa12.28□□□□□ -0.44
USP49-205ENST00000448078 SCUBE2Q9NQ36 999 aa12.28□□□□□ -0.44
USP49-205ENST00000448078 POTEFA5A3E0 1075 aa12.27□□□□□ -0.45
USP49-205ENST00000448078 NKX1-1Q15270 411 aaPredicted RBP12.27□□□□□ -0.45
USP49-205ENST00000448078 PAXIP1Q6ZW49 1069 aaPredicted RBP12.27□□□□□ -0.45
USP49-205ENST00000448078 MAMSTRQ6ZN01 415 aa12.26□□□□□ -0.45
USP49-205ENST00000448078 BOLA1Q9Y3E2 137 aa12.26□□□□□ -0.45
USP49-205ENST00000448078 SPRYD3Q8NCJ5 442 aa12.25□□□□□ -0.45
USP49-205ENST00000448078 FBXO22Q8NEZ5 403 aa12.24□□□□□ -0.45
USP49-205ENST00000448078 DNAJC5Q9H3Z4 198 aa12.24□□□□□ -0.45
USP49-205ENST00000448078 MS4A4AQ96JQ5 239 aa12.23□□□□□ -0.45
USP49-205ENST00000448078 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.22□□□□□ -0.45
USP49-205ENST00000448078 POTEB2H3BUK9 544 aa12.21□□□□□ -0.45
USP49-205ENST00000448078 ILDR1Q86SU0 546 aaPredicted RBP12.19□□□□□ -0.46
USP49-205ENST00000448078 GTPBP6O43824 516 aaPredicted RBP12.17□□□□□ -0.46
USP49-205ENST00000448078 PPP1R37O75864 691 aa12.16□□□□□ -0.46
USP49-205ENST00000448078 MICALL2Q8IY33 904 aa12.16□□□□□ -0.46
USP49-205ENST00000448078 SLAIN1Q8ND83 568 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms