RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 LCE2DQ5TA82 110 aaPredicted RBP13.66□□□□□ -0.22
VPS29-202ENST00000447578 C7P10643 843 aa13.64□□□□□ -0.23
VPS29-202ENST00000447578 SLC39A7Q92504 469 aa13.64□□□□□ -0.23
VPS29-202ENST00000447578 POTEJP0CG39 1038 aa13.62□□□□□ -0.23
VPS29-202ENST00000447578 ASTLQ6HA08 431 aaPredicted RBP13.6□□□□□ -0.23
VPS29-202ENST00000447578 SCUBE2Q9NQ36 999 aa13.58□□□□□ -0.24
VPS29-202ENST00000447578 ATMINO43313 823 aaPredicted RBP13.54□□□□□ -0.24
VPS29-202ENST00000447578 PROM2Q8N271 834 aa13.54□□□□□ -0.24
VPS29-202ENST00000447578 NPM1P06748 294 aaKnown RBP eCLIP13.49□□□□□ -0.25
VPS29-202ENST00000447578 CDAN1Q8IWY9 1227 aa13.47□□□□□ -0.25
VPS29-202ENST00000447578 MS4A3Q96HJ5 214 aa13.47□□□□□ -0.25
VPS29-202ENST00000447578 MNX1P50219 401 aaPredicted RBP13.41□□□□□ -0.26
VPS29-202ENST00000447578 FKBP8Q14318 412 aa13.35□□□□□ -0.27
VPS29-202ENST00000447578 ATN1P54259 1190 aaPredicted RBP13.34□□□□□ -0.27
VPS29-202ENST00000447578 POTEFA5A3E0 1075 aa13.27□□□□□ -0.29
VPS29-202ENST00000447578 MIER1Q8N108 512 aa13.25□□□□□ -0.29
VPS29-202ENST00000447578 MMRN1Q13201 1228 aa13.22□□□□□ -0.29
VPS29-202ENST00000447578 BMP2KQ9NSY1 1161 aaPredicted RBP13.18□□□□□ -0.3
VPS29-202ENST00000447578 TSPYL2Q9H2G4 693 aaPredicted RBP13.17□□□□□ -0.3
VPS29-202ENST00000447578 SEC24BO95487 1268 aa13.15□□□□□ -0.3
VPS29-202ENST00000447578 SPNS2Q8IVW8 549 aa13.15□□□□□ -0.3
VPS29-202ENST00000447578 ST18O60284 1047 aa13.14□□□□□ -0.31
VPS29-202ENST00000447578 PLEKHG5O94827 1062 aa13.14□□□□□ -0.31
VPS29-202ENST00000447578 PLCD3Q8N3E9 789 aa13.14□□□□□ -0.31
VPS29-202ENST00000447578 CCDC61Q9Y6R9 512 aa13.14□□□□□ -0.31
VPS29-202ENST00000447578 TIE1P35590 1138 aa13.12□□□□□ -0.31
VPS29-202ENST00000447578 KIF12Q96FN5 646 aa13.12□□□□□ -0.31
VPS29-202ENST00000447578 COLQQ9Y215 455 aaPredicted RBP13.09□□□□□ -0.31
VPS29-202ENST00000447578 RASEFQ8IZ41 740 aa13.08□□□□□ -0.32
VPS29-202ENST00000447578 SLAIN1Q8ND83 568 aa13.07□□□□□ -0.32
VPS29-202ENST00000447578 TRPC6Q9Y210 931 aa13.06□□□□□ -0.32
VPS29-202ENST00000447578 IER5LQ5T953 404 aa13□□□□□ -0.33
VPS29-202ENST00000447578 TTLL13PA6NNM8 815 aa12.99□□□□□ -0.33
VPS29-202ENST00000447578 MAP3K13O43283 966 aa12.98□□□□□ -0.33
VPS29-202ENST00000447578 TMEM121BQ9BXQ6 578 aaPredicted RBP12.98□□□□□ -0.33
VPS29-202ENST00000447578 NUBP1P53384 320 aa12.97□□□□□ -0.33
VPS29-202ENST00000447578 ZBTB47Q9UFB7 747 aaPredicted RBP12.96□□□□□ -0.33
VPS29-202ENST00000447578 FBXO3Q9UK99 471 aa12.95□□□□□ -0.34
VPS29-202ENST00000447578 TRIM35Q9UPQ4 493 aa12.92□□□□□ -0.34
VPS29-202ENST00000447578 SNPHO15079 494 aa12.87□□□□□ -0.35
VPS29-202ENST00000447578 VASPP50552 380 aaPredicted RBP12.85□□□□□ -0.35
VPS29-202ENST00000447578 FAM212AQ96EL1 285 aa12.83□□□□□ -0.36
VPS29-202ENST00000447578 PLCG2P16885 1265 aa12.81□□□□□ -0.36
VPS29-202ENST00000447578 MARVELD3Q96A59 401 aa12.81□□□□□ -0.36
VPS29-202ENST00000447578 SGIP1Q9BQI5 828 aa12.81□□□□□ -0.36
VPS29-202ENST00000447578 PCDHB13Q9Y5F0 798 aa12.8□□□□□ -0.36
VPS29-202ENST00000447578 DCAF8Q5TAQ9 597 aa12.79□□□□□ -0.36
VPS29-202ENST00000447578 KLHL34Q8N239 644 aa12.79□□□□□ -0.36
VPS29-202ENST00000447578 IFNL1Q8IU54 200 aa12.75□□□□□ -0.37
VPS29-202ENST00000447578 PYGBP11216 843 aa12.72□□□□□ -0.37
VPS29-202ENST00000447578 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.71□□□□□ -0.37
VPS29-202ENST00000447578 IRX5P78411 483 aaPredicted RBP12.69□□□□□ -0.38
VPS29-202ENST00000447578 EMP3P54852 163 aa12.67□□□□□ -0.38
VPS29-202ENST00000447578 TMEM106CQ9BVX2 250 aa12.67□□□□□ -0.38
VPS29-202ENST00000447578 IFNLR1Q8IU57 520 aaPredicted RBP12.66□□□□□ -0.38
VPS29-202ENST00000447578 KRTAP3-3Q9BYR6 98 aa12.66□□□□□ -0.38
VPS29-202ENST00000447578 KRTAP3-2Q9BYR7 98 aa12.66□□□□□ -0.38
VPS29-202ENST00000447578 OCEL1Q9H607 264 aa12.63□□□□□ -0.39
VPS29-202ENST00000447578 PCDHB8Q9UN66 801 aa12.63□□□□□ -0.39
VPS29-202ENST00000447578 HS3ST6Q96QI5 342 aa12.61□□□□□ -0.39
VPS29-202ENST00000447578 GSE1Q14687 1217 aa12.6□□□□□ -0.39
VPS29-202ENST00000447578 FAM205CA6NFA0 338 aa12.57□□□□□ -0.4
VPS29-202ENST00000447578 SPOCK2Q92563 424 aa12.56□□□□□ -0.4
VPS29-202ENST00000447578 POTEB3A0JP26 581 aa12.55□□□□□ -0.4
VPS29-202ENST00000447578 POTEBQ6S5H4 581 aa12.55□□□□□ -0.4
VPS29-202ENST00000447578 CIZ1Q9ULV3 898 aaPredicted RBP12.52□□□□□ -0.41
VPS29-202ENST00000447578 CHRM1P11229 460 aaPredicted RBP12.49□□□□□ -0.41
VPS29-202ENST00000447578 C3orf67Q6ZVT6 689 aa12.47□□□□□ -0.41
VPS29-202ENST00000447578 ZNF467Q7Z7K2 595 aaPredicted RBP12.47□□□□□ -0.41
VPS29-202ENST00000447578 RNF166Q96A37 237 aaPredicted RBP12.45□□□□□ -0.42
VPS29-202ENST00000447578 PSEN1P49768 467 aa12.41□□□□□ -0.42
VPS29-202ENST00000447578 L3MBTL3Q96JM7 780 aaPredicted RBP12.39□□□□□ -0.43
VPS29-202ENST00000447578 PDAP1Q13442 181 aaKnown RBP12.34□□□□□ -0.43
VPS29-202ENST00000447578 GOLGA2Q08379 1002 aa12.33□□□□□ -0.44
VPS29-202ENST00000447578 PDCD7Q8N8D1 485 aaKnown RBP12.33□□□□□ -0.44
VPS29-202ENST00000447578 MKRN3Q13064 507 aaKnown RBP12.32□□□□□ -0.44
VPS29-202ENST00000447578 MYT1LQ9UL68 1186 aa12.31□□□□□ -0.44
VPS29-202ENST00000447578 CABP2Q9NPB3 220 aa12.27□□□□□ -0.45
VPS29-202ENST00000447578 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.27□□□□□ -0.45
VPS29-202ENST00000447578 ERBB3P21860 1342 aa12.25□□□□□ -0.45
VPS29-202ENST00000447578 TRIM41Q8WV44 630 aa12.24□□□□□ -0.45
VPS29-202ENST00000447578 HOXB1P14653 301 aaPredicted RBP12.23□□□□□ -0.45
VPS29-202ENST00000447578 ZNF710Q8N1W2 664 aa12.21□□□□□ -0.45
VPS29-202ENST00000447578 DPY19L2Q6NUT2 758 aa12.2□□□□□ -0.46
VPS29-202ENST00000447578 RNF25Q96BH1 459 aaPredicted RBP12.2□□□□□ -0.46
VPS29-202ENST00000447578 HOXB3P14651 431 aaPredicted RBP12.19□□□□□ -0.46
VPS29-202ENST00000447578 ILDR1Q86SU0 546 aaPredicted RBP12.18□□□□□ -0.46
VPS29-202ENST00000447578 PTGER2P43116 358 aa12.17□□□□□ -0.46
VPS29-202ENST00000447578 RIOK3O14730 519 aaKnown RBP12.15□□□□□ -0.46
VPS29-202ENST00000447578 EFCAB3Q8N7B9 438 aa12.14□□□□□ -0.47
VPS29-202ENST00000447578 DOK7Q18PE1 504 aa12.13□□□□□ -0.47
VPS29-202ENST00000447578 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.11□□□□□ -0.47
VPS29-202ENST00000447578 VARS2Q5ST30 1063 aaKnown RBP12.11□□□□□ -0.47
VPS29-202ENST00000447578 ZFP91Q96JP5 570 aaPredicted RBP12.11□□□□□ -0.47
VPS29-202ENST00000447578 G3V3G9 751 aa12.08□□□□□ -0.48
VPS29-202ENST00000447578 VGFO15240 615 aaPredicted RBP12.07□□□□□ -0.48
VPS29-202ENST00000447578 ZNF687Q8N1G0 1237 aa12.07□□□□□ -0.48
VPS29-202ENST00000447578 RIMBP2O15034 1052 aa12.06□□□□□ -0.48
VPS29-202ENST00000447578 BOLA1Q9Y3E2 137 aa12.06□□□□□ -0.48
VPS29-202ENST00000447578 ECM2O94769 699 aaPredicted RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 607.2 ms