RNA–Protein interactions for RNA: ENST00000444746.6

RIF1-205, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene RIF1, Length 7,897 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-205ENST00000444746 C14orf37Q86TY3 774 aa10.82□□□□□ -0.68
RIF1-205ENST00000444746 CCDC136Q96JN2 1154 aa10.82□□□□□ -0.68
RIF1-205ENST00000444746 TSPY4P0CV99 314 aa10.82□□□□□ -0.68
RIF1-205ENST00000444746 TSPY10P0CW01 314 aa10.82□□□□□ -0.68
RIF1-205ENST00000444746 CEP162Q5TB80 1403 aa10.8□□□□□ -0.68
RIF1-205ENST00000444746 TNNT2P45379 298 aaPredicted RBP10.8□□□□□ -0.68
RIF1-205ENST00000444746 WDR43Q15061 677 aaKnown RBP eCLIP10.8□□□□□ -0.688e-6■■□□□ 11.7
RIF1-205ENST00000444746 NEUROD2Q15784 382 aa10.8□□□□□ -0.68
RIF1-205ENST00000444746 TPRNQ4KMQ1 711 aa10.79□□□□□ -0.68
RIF1-205ENST00000444746 PPM1GO15355 546 aaPredicted RBP10.78□□□□□ -0.68
RIF1-205ENST00000444746 EIF5BO60841 1220 aaKnown RBP10.77□□□□□ -0.69
RIF1-205ENST00000444746 FOXD1Q16676 465 aa10.77□□□□□ -0.69
RIF1-205ENST00000444746 HSP90AA1P07900 732 aaKnown RBP10.76□□□□□ -0.69
RIF1-205ENST00000444746 SUPT16HQ9Y5B9 1047 aaKnown RBP10.75□□□□□ -0.69
RIF1-205ENST00000444746 CECR2Q9BXF3 1484 aa10.74□□□□□ -0.69
RIF1-205ENST00000444746 CC2D1BQ5T0F9 858 aaKnown RBP10.74□□□□□ -0.69
RIF1-205ENST00000444746 EIF4G2P78344 907 aaKnown RBP eCLIP10.74□□□□□ -0.69
RIF1-205ENST00000444746 SOGA1O94964 1423 aa10.73□□□□□ -0.69
RIF1-205ENST00000444746 LAS1LQ9Y4W2 734 aaKnown RBP10.72□□□□□ -0.69
RIF1-205ENST00000444746 ARID4BQ4LE39 1312 aaPredicted RBP10.71□□□□□ -0.69
RIF1-205ENST00000444746 PPP1R15AO75807 674 aaPredicted RBP10.7□□□□□ -0.7
RIF1-205ENST00000444746 PLEKHD1A6NEE1 506 aa10.7□□□□□ -0.7
RIF1-205ENST00000444746 SAFB2Q14151 953 aaKnown RBP eCLIP10.7□□□□□ -0.71e-6■■□□□ 11.8
RIF1-205ENST00000444746 MLECQ14165 292 aa10.7□□□□□ -0.7
RIF1-205ENST00000444746 SOX12O15370 315 aa10.7□□□□□ -0.7
RIF1-205ENST00000444746 CFDP1Q9UEE9 299 aaPredicted RBP10.7□□□□□ -0.7
RIF1-205ENST00000444746 TAOK2Q9UL54 1235 aa10.7□□□□□ -0.7
RIF1-205ENST00000444746 KANK4Q5T7N3 995 aaPredicted RBP10.7□□□□□ -0.7
RIF1-205ENST00000444746 WRNQ14191 1432 aaPredicted RBP eCLIP10.7□□□□□ -0.79e-6■■■■■ 50.1
RIF1-205ENST00000444746 CARD11Q9BXL7 1154 aa10.69□□□□□ -0.7
RIF1-205ENST00000444746 GOLGA3Q08378 1498 aa10.67□□□□□ -0.7
RIF1-205ENST00000444746 LMOD2Q6P5Q4 547 aa10.66□□□□□ -0.7
RIF1-205ENST00000444746 B4GALNT3Q6L9W6 998 aa10.63□□□□□ -0.71
RIF1-205ENST00000444746 FRAT1Q92837 279 aaPredicted RBP10.63□□□□□ -0.71
RIF1-205ENST00000444746 BAZ1BQ9UIG0 1483 aaKnown RBP10.62□□□□□ -0.71
RIF1-205ENST00000444746 RGS3P49796 1198 aa10.62□□□□□ -0.71
RIF1-205ENST00000444746 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.62□□□□□ -0.71
RIF1-205ENST00000444746 NUTM2DQ5VT03 806 aaPredicted RBP10.62□□□□□ -0.71
RIF1-205ENST00000444746 UPF2Q9HAU5 1272 aaKnown RBP10.62□□□□□ -0.71
RIF1-205ENST00000444746 EIF4G1Q04637 1599 aaKnown RBP10.61□□□□□ -0.71
RIF1-205ENST00000444746 DCAF11Q8TEB1 546 aa10.61□□□□□ -0.71
RIF1-205ENST00000444746 RTN4Q9NQC3 1192 aaKnown RBP10.6□□□□□ -0.71
RIF1-205ENST00000444746 ABCC8Q09428 1581 aa10.58□□□□□ -0.71
RIF1-205ENST00000444746 TNIKQ9UKE5 1360 aa10.58□□□□□ -0.72
RIF1-205ENST00000444746 U2SURPO15042 1029 aaKnown RBP10.58□□□□□ -0.72
RIF1-205ENST00000444746 STK26Q9P289 416 aa10.58□□□□□ -0.72
RIF1-205ENST00000444746 KNSTRNQ9Y448 316 aa10.57□□□□□ -0.72
RIF1-205ENST00000444746 SPRYD3Q8NCJ5 442 aa10.57□□□□□ -0.72
RIF1-205ENST00000444746 HSPA5P11021 654 aaKnown RBP10.56□□□□□ -0.72
RIF1-205ENST00000444746 NCLP19338 710 aaKnown RBP10.55□□□□□ -0.72
RIF1-205ENST00000444746 HAP1P54257 671 aaPredicted RBP10.55□□□□□ -0.72
RIF1-205ENST00000444746 POGKQ9P215 609 aa10.55□□□□□ -0.72
RIF1-205ENST00000444746 KIF27Q86VH2 1401 aa10.55□□□□□ -0.72
RIF1-205ENST00000444746 GGT6Q6P531 493 aa10.54□□□□□ -0.72
RIF1-205ENST00000444746 TRHP20396 242 aaPredicted RBP10.54□□□□□ -0.72
RIF1-205ENST00000444746 TULP1O00294 542 aaPredicted RBP10.54□□□□□ -0.72
RIF1-205ENST00000444746 CUX2O14529 1486 aa10.54□□□□□ -0.72
RIF1-205ENST00000444746 RB1CC1Q8TDY2 1594 aa10.53□□□□□ -0.72
RIF1-205ENST00000444746 ERCC6Q03468 1493 aa10.53□□□□□ -0.72
RIF1-205ENST00000444746 TDRD9Q8NDG6 1382 aaKnown RBP10.53□□□□□ -0.72
RIF1-205ENST00000444746 CCDC88BA6NC98 1476 aa10.52□□□□□ -0.73
RIF1-205ENST00000444746 CARMIL1Q5VZK9 1371 aa10.52□□□□□ -0.73
RIF1-205ENST00000444746 MYH16Q9H6N6 1097 aa10.51□□□□□ -0.73
RIF1-205ENST00000444746 ANP32BQ92688 251 aaKnown RBP10.51□□□□□ -0.73
RIF1-205ENST00000444746 CEP164Q9UPV0 1460 aa10.5□□□□□ -0.73
RIF1-205ENST00000444746 APBB1O00213 710 aa10.5□□□□□ -0.73
RIF1-205ENST00000444746 PKD2Q13563 968 aa10.5□□□□□ -0.73
RIF1-205ENST00000444746 CCNB3Q8WWL7 1395 aa10.49□□□□□ -0.73
RIF1-205ENST00000444746 FTSJ3Q8IY81 847 aaKnown RBP10.49□□□□□ -0.73
RIF1-205ENST00000444746 EEA1Q15075 1411 aa10.49□□□□□ -0.73
RIF1-205ENST00000444746 MROH2BQ7Z745 1585 aa10.49□□□□□ -0.73
RIF1-205ENST00000444746 SRPK2P78362 688 aaKnown RBP10.47□□□□□ -0.73
RIF1-205ENST00000444746 HNRNPMP52272 730 aaKnown RBP eCLIP10.47□□□□□ -0.737e-8■■■□□ 15.7
RIF1-205ENST00000444746 NUTM2FA1L443 756 aa10.47□□□□□ -0.73
RIF1-205ENST00000444746 AMER1Q5JTC6 1135 aaPredicted RBP10.47□□□□□ -0.73
RIF1-205ENST00000444746 CFAP53Q96M91 514 aa10.47□□□□□ -0.73
RIF1-205ENST00000444746 MAPK8IP3Q9UPT6 1336 aa10.46□□□□□ -0.73
RIF1-205ENST00000444746 CCDC146Q8IYE0 955 aa10.45□□□□□ -0.74
RIF1-205ENST00000444746 RUSC2Q8N2Y8 1516 aa10.42□□□□□ -0.74
RIF1-205ENST00000444746 PPP4R2Q9NY27 417 aa10.42□□□□□ -0.74
RIF1-205ENST00000444746 RAB3GAP2Q9H2M9 1393 aa10.41□□□□□ -0.74
RIF1-205ENST00000444746 MORC1Q86VD1 984 aa10.41□□□□□ -0.74
RIF1-205ENST00000444746 MPHOSPH9Q99550 1183 aa10.41□□□□□ -0.74
RIF1-205ENST00000444746 CCDC180Q9P1Z9 1646 aa10.41□□□□□ -0.74
RIF1-205ENST00000444746 PLCB2Q00722 1185 aa10.41□□□□□ -0.74
RIF1-205ENST00000444746 PAK3O75914 559 aaPredicted RBP10.4□□□□□ -0.74
RIF1-205ENST00000444746 TMF1P82094 1093 aa10.4□□□□□ -0.74
RIF1-205ENST00000444746 ANP32EQ9BTT0 268 aa10.4□□□□□ -0.74
RIF1-205ENST00000444746 NAP1L2Q9ULW6 460 aaPredicted RBP10.4□□□□□ -0.74
RIF1-205ENST00000444746 FHOD3Q2V2M9 1422 aa10.4□□□□□ -0.75
RIF1-205ENST00000444746 SETD5Q9C0A6 1442 aa10.39□□□□□ -0.75
RIF1-205ENST00000444746 OS9Q13438 667 aaPredicted RBP10.38□□□□□ -0.75
RIF1-205ENST00000444746 ZNF330Q9Y3S2 320 aaPredicted RBP10.38□□□□□ -0.75
RIF1-205ENST00000444746 NUDCQ9Y266 331 aa10.37□□□□□ -0.75
RIF1-205ENST00000444746 L3MBTL2Q969R5 705 aa10.37□□□□□ -0.75
RIF1-205ENST00000444746 RRP7AQ9Y3A4 280 aaKnown RBP10.37□□□□□ -0.75
RIF1-205ENST00000444746 CLUAP1Q96AJ1 413 aa10.37□□□□□ -0.75
RIF1-205ENST00000444746 BECN1Q14457 450 aa10.36□□□□□ -0.75
RIF1-205ENST00000444746 RBM19Q9Y4C8 960 aaKnown RBP10.36□□□□□ -0.75
RIF1-205ENST00000444746 KIF3BO15066 747 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms