RNA–Protein interactions for RNA: ENST00000444712.5

SNX13-204, Transcript of sorting nexin 13, humanhuman

TSL 5

Gene SNX13, Length 2,018 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-204ENST00000444712 ZEB1P37275 1124 aaPredicted RBP24.03■■□□□ 1.44
SNX13-204ENST00000444712 ADAMTS12P58397 1594 aa24.02■■□□□ 1.44
SNX13-204ENST00000444712 FHAD1B1AJZ9 1412 aa24.02■■□□□ 1.44
SNX13-204ENST00000444712 TTBK1Q5TCY1 1321 aaPredicted RBP24.02■■□□□ 1.44
SNX13-204ENST00000444712 MAP3K1Q13233 1512 aa24■■□□□ 1.43
SNX13-204ENST00000444712 AQRO60306 1485 aaKnown RBP eCLIP23.96■■□□□ 1.43
SNX13-204ENST00000444712 EIF4G3O43432 1585 aaKnown RBP23.93■■□□□ 1.42
SNX13-204ENST00000444712 SAMD9Q5K651 1589 aa23.93■■□□□ 1.42
SNX13-204ENST00000444712 TIAM1Q13009 1591 aa23.9■■□□□ 1.42
SNX13-204ENST00000444712 ZNF608Q9ULD9 1512 aaPredicted RBP23.89■■□□□ 1.42
SNX13-204ENST00000444712 CFAP43Q8NDM7 1665 aa23.89■■□□□ 1.42
SNX13-204ENST00000444712 PCF11O94913 1555 aaKnown RBP23.88■■□□□ 1.41
SNX13-204ENST00000444712 FYCO1Q9BQS8 1478 aa23.87■■□□□ 1.41
SNX13-204ENST00000444712 FMN1Q68DA7 1419 aa23.86■■□□□ 1.41
SNX13-204ENST00000444712 IQGAP2Q13576 1575 aa23.84■■□□□ 1.41
SNX13-204ENST00000444712 FHOD3Q2V2M9 1422 aa23.84■■□□□ 1.41
SNX13-204ENST00000444712 CASKIN1Q8WXD9 1431 aa23.82■■□□□ 1.4
SNX13-204ENST00000444712 MAGI1Q96QZ7 1491 aaPredicted RBP23.81■■□□□ 1.4
SNX13-204ENST00000444712 SNAPC4Q5SXM2 1469 aa23.8■■□□□ 1.4
SNX13-204ENST00000444712 KANK4Q5T7N3 995 aaPredicted RBP23.78■■□□□ 1.4
SNX13-204ENST00000444712 P3H3Q8IVL6 736 aa23.76■■□□□ 1.39
SNX13-204ENST00000444712 LRRC9Q6ZRR7 1453 aa23.75■■□□□ 1.39
SNX13-204ENST00000444712 RRBP1Q9P2E9 1410 aaKnown RBP23.75■■□□□ 1.39
SNX13-204ENST00000444712 GRIN2AQ12879 1464 aa23.74■■□□□ 1.39
SNX13-204ENST00000444712 UGGT2Q9NYU1 1516 aa23.71■■□□□ 1.39
SNX13-204ENST00000444712 KIAA0586Q9BVV6 1533 aa23.7■■□□□ 1.38
SNX13-204ENST00000444712 SYNJ2O15056 1496 aa23.7■■□□□ 1.38
SNX13-204ENST00000444712 CCER1Q8TC90 406 aaPredicted RBP23.69■■□□□ 1.38
SNX13-204ENST00000444712 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.66■■□□□ 1.38
SNX13-204ENST00000444712 CCNB3Q8WWL7 1395 aa23.62■■□□□ 1.37
SNX13-204ENST00000444712 HECW1Q76N89 1606 aa23.62■■□□□ 1.37
SNX13-204ENST00000444712 HNRNPUL2Q1KMD3 747 aaKnown RBP23.62■■□□□ 1.37
SNX13-204ENST00000444712 LRRIQ1Q96JM4 1722 aa23.61■■□□□ 1.37
SNX13-204ENST00000444712 ATP1B4Q9UN42 357 aaPredicted RBP23.6■■□□□ 1.37
SNX13-204ENST00000444712 CCDC18Q5T9S5 1454 aa23.59■■□□□ 1.37
SNX13-204ENST00000444712 KIAA0556O60303 1618 aa23.58■■□□□ 1.37
SNX13-204ENST00000444712 CHMP7Q8WUX9 453 aaPredicted RBP23.57■■□□□ 1.36
SNX13-204ENST00000444712 CEP170Q5SW79 1584 aa23.56■■□□□ 1.36
SNX13-204ENST00000444712 NUP160Q12769 1436 aa23.53■■□□□ 1.36
SNX13-204ENST00000444712 EHBP1L1Q8N3D4 1523 aa23.53■■□□□ 1.36
SNX13-204ENST00000444712 DISP1Q96F81 1524 aa23.51■■□□□ 1.35
SNX13-204ENST00000444712 SUPT6HQ7KZ85 1726 aaKnown RBP23.51■■□□□ 1.35
SNX13-204ENST00000444712 MTUS2Q5JR59 1369 aa23.5■■□□□ 1.35
SNX13-204ENST00000444712 PHLDB1Q86UU1 1377 aa23.49■■□□□ 1.35
SNX13-204ENST00000444712 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.46■■□□□ 1.35
SNX13-204ENST00000444712 EPRSP07814 1512 aaKnown RBP23.43■■□□□ 1.34
SNX13-204ENST00000444712 RAPGEF6Q8TEU7 1601 aa23.42■■□□□ 1.34
SNX13-204ENST00000444712 CARMIL2Q6F5E8 1435 aa23.42■■□□□ 1.34
SNX13-204ENST00000444712 FBLN2P98095 1184 aa23.42■■□□□ 1.34
SNX13-204ENST00000444712 CHD1O14646 1710 aa23.38■■□□□ 1.33
SNX13-204ENST00000444712 NCOA2Q15596 1464 aa23.38■■□□□ 1.33
SNX13-204ENST00000444712 CLSPNQ9HAW4 1339 aa23.36■■□□□ 1.33
SNX13-204ENST00000444712 FGD6Q6ZV73 1430 aa23.36■■□□□ 1.33
SNX13-204ENST00000444712 ARHGEF11O15085 1522 aa23.36■■□□□ 1.33
SNX13-204ENST00000444712 MYOM3Q5VTT5 1437 aa23.33■■□□□ 1.33
SNX13-204ENST00000444712 MAGI3Q5TCQ9 1506 aa23.33■■□□□ 1.33
SNX13-204ENST00000444712 JPH4Q96JJ6 628 aa23.32■■□□□ 1.32
SNX13-204ENST00000444712 CDK13Q14004 1512 aaKnown RBP23.31■■□□□ 1.32
SNX13-204ENST00000444712 FAM50AQ14320 339 aaKnown RBP23.3■■□□□ 1.32
SNX13-204ENST00000444712 NUP153P49790 1475 aaKnown RBP23.29■■□□□ 1.32
SNX13-204ENST00000444712 DHX57Q6P158 1386 aaKnown RBP23.26■■□□□ 1.31
SNX13-204ENST00000444712 ITGAEP38570 1179 aa23.26■■□□□ 1.31
SNX13-204ENST00000444712 PTPN23Q9H3S7 1636 aa23.26■■□□□ 1.31
SNX13-204ENST00000444712 SETD5Q9C0A6 1442 aa23.25■■□□□ 1.31
SNX13-204ENST00000444712 CDK11AQ9UQ88 783 aaPredicted RBP23.23■■□□□ 1.31
SNX13-204ENST00000444712 SHROOM2Q13796 1616 aa23.22■■□□□ 1.31
SNX13-204ENST00000444712 MIA2Q96PC5 1412 aa23.21■■□□□ 1.31
SNX13-204ENST00000444712 TCOF1Q13428 1488 aaKnown RBP23.21■■□□□ 1.31
SNX13-204ENST00000444712 RAB3GAP2Q9H2M9 1393 aa23.2■■□□□ 1.3
SNX13-204ENST00000444712 ABCA8O94911 1581 aa23.2■■□□□ 1.3
SNX13-204ENST00000444712 PLB1Q6P1J6 1458 aa23.18■■□□□ 1.3
SNX13-204ENST00000444712 ADCY10Q96PN6 1610 aa23.17■■□□□ 1.3
SNX13-204ENST00000444712 PRG4Q92954 1404 aaPredicted RBP23.16■■□□□ 1.3
SNX13-204ENST00000444712 ITSN2Q9NZM3 1697 aa23.14■■□□□ 1.29
SNX13-204ENST00000444712 TROQ12816 1431 aaPredicted RBP23.14■■□□□ 1.29
SNX13-204ENST00000444712 HFM1A2PYH4 1435 aa23.09■■□□□ 1.29
SNX13-204ENST00000444712 ARID3CA6NKF2 412 aa23.07■■□□□ 1.28
SNX13-204ENST00000444712 PTPRGP23470 1445 aa23.07■■□□□ 1.28
SNX13-204ENST00000444712 CLASP1Q7Z460 1538 aa23.06■■□□□ 1.28
SNX13-204ENST00000444712 GCC2Q8IWJ2 1684 aa23.06■■□□□ 1.28
SNX13-204ENST00000444712 AKNAQ7Z591 1439 aa23.05■■□□□ 1.28
SNX13-204ENST00000444712 KIF14Q15058 1648 aa23.03■■□□□ 1.28
SNX13-204ENST00000444712 PTPRKQ15262 1439 aa23.02■■□□□ 1.28
SNX13-204ENST00000444712 ATP10BO94823 1461 aa23.01■■□□□ 1.27
SNX13-204ENST00000444712 MAPKBP1O60336 1514 aa23■■□□□ 1.27
SNX13-204ENST00000444712 DNMT1P26358 1616 aaKnown RBP23■■□□□ 1.27
SNX13-204ENST00000444712 NAIPQ13075 1403 aa22.98■■□□□ 1.27
SNX13-204ENST00000444712 PLEKHD1A6NEE1 506 aa22.97■■□□□ 1.27
SNX13-204ENST00000444712 UACAQ9BZF9 1416 aa22.97■■□□□ 1.27
SNX13-204ENST00000444712 ACIN1Q9UKV3 1341 aaKnown RBP22.94■■□□□ 1.26
SNX13-204ENST00000444712 CDC42BPAQ5VT25 1732 aa22.93■■□□□ 1.26
SNX13-204ENST00000444712 ABCC2Q92887 1545 aa22.93■■□□□ 1.26
SNX13-204ENST00000444712 GPATCH8Q9UKJ3 1502 aaKnown RBP22.93■■□□□ 1.26
SNX13-204ENST00000444712 DAPK1P53355 1430 aa22.92■■□□□ 1.26
SNX13-204ENST00000444712 ROCK1Q13464 1354 aa22.91■■□□□ 1.26
SNX13-204ENST00000444712 ZNF316A6NFI3 1004 aaPredicted RBP22.91■■□□□ 1.26
SNX13-204ENST00000444712 CAMSAP2Q08AD1 1489 aa22.9■■□□□ 1.26
SNX13-204ENST00000444712 ERCC6L2Q5T890 1561 aa22.9■■□□□ 1.26
SNX13-204ENST00000444712 ADGBQ8N7X0 1667 aa22.89■■□□□ 1.26
SNX13-204ENST00000444712 ABCC10Q5T3U5 1492 aa22.89■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms