RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 MS4A3Q96HJ5 214 aa10.74□□□□□ -0.69
PTPN4-206ENST00000441089 PAK3O75914 559 aaPredicted RBP10.69□□□□□ -0.7
PTPN4-206ENST00000441089 ATMINO43313 823 aaPredicted RBP10.67□□□□□ -0.7
PTPN4-206ENST00000441089 ASTLQ6HA08 431 aaPredicted RBP10.67□□□□□ -0.7
PTPN4-206ENST00000441089 NPM1P06748 294 aaKnown RBP eCLIP10.66□□□□□ -0.7
PTPN4-206ENST00000441089 METRNQ9UJH8 293 aa10.65□□□□□ -0.7
PTPN4-206ENST00000441089 POTEMA6NI47 508 aa10.64□□□□□ -0.71
PTPN4-206ENST00000441089 PROM2Q8N271 834 aa10.64□□□□□ -0.71
PTPN4-206ENST00000441089 TSPYL2Q9H2G4 693 aaPredicted RBP10.62□□□□□ -0.71
PTPN4-206ENST00000441089 TRPC6Q9Y210 931 aa10.62□□□□□ -0.71
PTPN4-206ENST00000441089 LCE2DQ5TA82 110 aaPredicted RBP10.61□□□□□ -0.71
PTPN4-206ENST00000441089 POTEGQ6S5H5 508 aa10.61□□□□□ -0.71
PTPN4-206ENST00000441089 CCDC61Q9Y6R9 512 aa10.6□□□□□ -0.71
PTPN4-206ENST00000441089 POTEFA5A3E0 1075 aa10.59□□□□□ -0.71
PTPN4-206ENST00000441089 NACADO15069 1562 aa10.59□□□□□ -0.71
PTPN4-206ENST00000441089 ATN1P54259 1190 aaPredicted RBP10.58□□□□□ -0.72
PTPN4-206ENST00000441089 UNC13AQ9UPW8 1703 aa10.56□□□□□ -0.72
PTPN4-206ENST00000441089 SLC39A7Q92504 469 aa10.55□□□□□ -0.72
PTPN4-206ENST00000441089 KIF12Q96FN5 646 aa10.55□□□□□ -0.72
PTPN4-206ENST00000441089 C7P10643 843 aa10.54□□□□□ -0.72
PTPN4-206ENST00000441089 BMP2KQ9NSY1 1161 aaPredicted RBP10.53□□□□□ -0.72
PTPN4-206ENST00000441089 RASEFQ8IZ41 740 aa10.5□□□□□ -0.73
PTPN4-206ENST00000441089 MAP3K13O43283 966 aa10.48□□□□□ -0.73
PTPN4-206ENST00000441089 CECR2Q9BXF3 1484 aa10.47□□□□□ -0.73
PTPN4-206ENST00000441089 BICRAQ9NZM4 1560 aa10.45□□□□□ -0.74
PTPN4-206ENST00000441089 COLQQ9Y215 455 aaPredicted RBP10.44□□□□□ -0.74
PTPN4-206ENST00000441089 FAM163AQ96GL9 167 aaPredicted RBP10.42□□□□□ -0.74
PTPN4-206ENST00000441089 CC2D2AQ9P2K1 1620 aa10.41□□□□□ -0.74
PTPN4-206ENST00000441089 TTLL13PA6NNM8 815 aa10.39□□□□□ -0.75
PTPN4-206ENST00000441089 MAMSTRQ6ZN01 415 aa10.39□□□□□ -0.75
PTPN4-206ENST00000441089 TIE1P35590 1138 aa10.38□□□□□ -0.75
PTPN4-206ENST00000441089 MIER1Q8N108 512 aa10.38□□□□□ -0.75
PTPN4-206ENST00000441089 SCUBE2Q9NQ36 999 aa10.36□□□□□ -0.75
PTPN4-206ENST00000441089 SHROOM4Q9ULL8 1493 aa10.35□□□□□ -0.75
PTPN4-206ENST00000441089 DCAF8L2P0C7V8 631 aa10.34□□□□□ -0.75
PTPN4-206ENST00000441089 NUBP1P53384 320 aa10.32□□□□□ -0.76
PTPN4-206ENST00000441089 PCDH10Q9P2E7 1040 aa10.31□□□□□ -0.76
PTPN4-206ENST00000441089 TRIM35Q9UPQ4 493 aa10.31□□□□□ -0.76
PTPN4-206ENST00000441089 IFNL1Q8IU54 200 aa10.28□□□□□ -0.76
PTPN4-206ENST00000441089 PCDHB13Q9Y5F0 798 aa10.28□□□□□ -0.76
PTPN4-206ENST00000441089 MYO15BQ96JP2 1530 aa10.28□□□□□ -0.76
PTPN4-206ENST00000441089 SEC24BO95487 1268 aa10.26□□□□□ -0.77
PTPN4-206ENST00000441089 EIF4G1Q04637 1599 aaKnown RBP10.26□□□□□ -0.77
PTPN4-206ENST00000441089 PLCD3Q8N3E9 789 aa10.24□□□□□ -0.77
PTPN4-206ENST00000441089 CUX2O14529 1486 aa10.23□□□□□ -0.77
PTPN4-206ENST00000441089 PLEKHG5O94827 1062 aa10.21□□□□□ -0.77
PTPN4-206ENST00000441089 IER5LQ5T953 404 aa10.21□□□□□ -0.77
PTPN4-206ENST00000441089 SGIP1Q9BQI5 828 aa10.21□□□□□ -0.77
PTPN4-206ENST00000441089 CDAN1Q8IWY9 1227 aa10.19□□□□□ -0.78
PTPN4-206ENST00000441089 TMEM106CQ9BVX2 250 aa10.19□□□□□ -0.78
PTPN4-206ENST00000441089 ST18O60284 1047 aa10.18□□□□□ -0.78
PTPN4-206ENST00000441089 IRX5P78411 483 aaPredicted RBP10.17□□□□□ -0.78
PTPN4-206ENST00000441089 SLAIN1Q8ND83 568 aa10.17□□□□□ -0.78
PTPN4-206ENST00000441089 FAM212AQ96EL1 285 aa10.11□□□□□ -0.79
PTPN4-206ENST00000441089 PYGBP11216 843 aa10.1□□□□□ -0.79
PTPN4-206ENST00000441089 PLCG2P16885 1265 aa10.09□□□□□ -0.79
PTPN4-206ENST00000441089 TRIM41Q8WV44 630 aa10.09□□□□□ -0.79
PTPN4-206ENST00000441089 PCDHB8Q9UN66 801 aa10.09□□□□□ -0.79
PTPN4-206ENST00000441089 FKBP8Q14318 412 aa10.08□□□□□ -0.8
PTPN4-206ENST00000441089 ZBTB47Q9UFB7 747 aaPredicted RBP10.06□□□□□ -0.8
PTPN4-206ENST00000441089 ERCC6Q03468 1493 aa10.04□□□□□ -0.8
PTPN4-206ENST00000441089 OCEL1Q9H607 264 aa10.03□□□□□ -0.8
PTPN4-206ENST00000441089 DCAF8Q5TAQ9 597 aa10.02□□□□□ -0.81
PTPN4-206ENST00000441089 MARVELD3Q96A59 401 aa10.01□□□□□ -0.81
PTPN4-206ENST00000441089 PDCD7Q8N8D1 485 aaKnown RBP10□□□□□ -0.81
PTPN4-206ENST00000441089 SCRIBQ14160 1630 aa9.99□□□□□ -0.81
PTPN4-206ENST00000441089 SPNS2Q8IVW8 549 aa9.98□□□□□ -0.81
PTPN4-206ENST00000441089 MMRN1Q13201 1228 aa9.97□□□□□ -0.81
PTPN4-206ENST00000441089 POTEB3A0JP26 581 aa9.95□□□□□ -0.82
PTPN4-206ENST00000441089 POTEBQ6S5H4 581 aa9.95□□□□□ -0.82
PTPN4-206ENST00000441089 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.93□□□□□ -0.82
PTPN4-206ENST00000441089 DCAF1Q9Y4B6 1507 aa9.92□□□□□ -0.82
PTPN4-206ENST00000441089 TMEM121BQ9BXQ6 578 aaPredicted RBP9.92□□□□□ -0.82
PTPN4-206ENST00000441089 DPY19L2Q6NUT2 758 aa9.87□□□□□ -0.83
PTPN4-206ENST00000441089 KRTAP3-3Q9BYR6 98 aa9.87□□□□□ -0.83
PTPN4-206ENST00000441089 KRTAP3-2Q9BYR7 98 aa9.87□□□□□ -0.83
PTPN4-206ENST00000441089 SNPHO15079 494 aa9.84□□□□□ -0.83
PTPN4-206ENST00000441089 VASPP50552 380 aaPredicted RBP9.84□□□□□ -0.83
PTPN4-206ENST00000441089 PSEN1P49768 467 aa9.83□□□□□ -0.84
PTPN4-206ENST00000441089 ILDR1Q86SU0 546 aaPredicted RBP9.83□□□□□ -0.84
PTPN4-206ENST00000441089 C3orf67Q6ZVT6 689 aa9.82□□□□□ -0.84
PTPN4-206ENST00000441089 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.82□□□□□ -0.843e-7■■■■■ 30.9
PTPN4-206ENST00000441089 ZCCHC6Q5VYS8 1495 aaKnown RBP9.82□□□□□ -0.84
PTPN4-206ENST00000441089 EMP3P54852 163 aa9.81□□□□□ -0.84
PTPN4-206ENST00000441089 ZNF467Q7Z7K2 595 aaPredicted RBP9.81□□□□□ -0.84
PTPN4-206ENST00000441089 HS3ST6Q96QI5 342 aa9.81□□□□□ -0.84
PTPN4-206ENST00000441089 CHRM1P11229 460 aaPredicted RBP9.8□□□□□ -0.84
PTPN4-206ENST00000441089 MKRN3Q13064 507 aaKnown RBP9.8□□□□□ -0.84
PTPN4-206ENST00000441089 FAM205CA6NFA0 338 aa9.79□□□□□ -0.84
PTPN4-206ENST00000441089 KLHL34Q8N239 644 aa9.79□□□□□ -0.84
PTPN4-206ENST00000441089 THOC2Q8NI27 1593 aaKnown RBP9.79□□□□□ -0.84
PTPN4-206ENST00000441089 GSE1Q14687 1217 aa9.78□□□□□ -0.84
PTPN4-206ENST00000441089 FBXO3Q9UK99 471 aa9.78□□□□□ -0.84
PTPN4-206ENST00000441089 HOXB3P14651 431 aaPredicted RBP9.77□□□□□ -0.85
PTPN4-206ENST00000441089 L3MBTL3Q96JM7 780 aaPredicted RBP9.77□□□□□ -0.85
PTPN4-206ENST00000441089 NCAPD3P42695 1498 aa9.75□□□□□ -0.85
PTPN4-206ENST00000441089 GOLGA2Q08379 1002 aa9.75□□□□□ -0.85
PTPN4-206ENST00000441089 CABP2Q9NPB3 220 aa9.73□□□□□ -0.85
PTPN4-206ENST00000441089 NESP48681 1621 aa9.72□□□□□ -0.85
PTPN4-206ENST00000441089 PDAP1Q13442 181 aaKnown RBP9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms