RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 FAM212AQ96EL1 285 aa13.55□□□□□ -0.24
USP54-206ENST00000433394 PITPNM1O00562 1244 aa13.54□□□□□ -0.24
USP54-206ENST00000433394 NPM1P06748 294 aaKnown RBP eCLIP13.54□□□□□ -0.24
USP54-206ENST00000433394 PIP4P2Q8N4L2 257 aa13.53□□□□□ -0.24
USP54-206ENST00000433394 BCANQ96GW7 911 aa13.52□□□□□ -0.25
USP54-206ENST00000433394 NUBP1P53384 320 aa13.47□□□□□ -0.25
USP54-206ENST00000433394 CREBZFQ9NS37 354 aa13.45□□□□□ -0.26
USP54-206ENST00000433394 FXR2P51116 673 aaKnown RBP eCLIP13.44□□□□□ -0.26
USP54-206ENST00000433394 HS6ST3Q8IZP7 471 aa13.44□□□□□ -0.26
USP54-206ENST00000433394 RIOK3O14730 519 aaKnown RBP13.42□□□□□ -0.26
USP54-206ENST00000433394 SP7Q8TDD2 431 aaPredicted RBP13.37□□□□□ -0.27
USP54-206ENST00000433394 VGFO15240 615 aaPredicted RBP13.35□□□□□ -0.27
USP54-206ENST00000433394 CHRM1P11229 460 aaPredicted RBP13.33□□□□□ -0.28
USP54-206ENST00000433394 HAX1O00165 279 aa13.32□□□□□ -0.28
USP54-206ENST00000433394 MNX1P50219 401 aaPredicted RBP13.32□□□□□ -0.28
USP54-206ENST00000433394 RNF25Q96BH1 459 aaPredicted RBP13.32□□□□□ -0.28
USP54-206ENST00000433394 STK25O00506 426 aa13.31□□□□□ -0.28
USP54-206ENST00000433394 DNAJC5Q9H3Z4 198 aa13.3□□□□□ -0.28
USP54-206ENST00000433394 TSHZ2Q9NRE2 1034 aa13.29□□□□□ -0.28
USP54-206ENST00000433394 RYDENQ9NUL5 291 aaKnown RBP13.29□□□□□ -0.28
USP54-206ENST00000433394 RASEFQ8IZ41 740 aa13.28□□□□□ -0.28
USP54-206ENST00000433394 KDM2AQ9Y2K7 1162 aa13.28□□□□□ -0.28
USP54-206ENST00000433394 PYGBP11216 843 aa13.22□□□□□ -0.29
USP54-206ENST00000433394 STK24Q9Y6E0 443 aa13.21□□□□□ -0.29
USP54-206ENST00000433394 PRKAR2AP13861 404 aaKnown RBP13.2□□□□□ -0.3
USP54-206ENST00000433394 SGIP1Q9BQI5 828 aa13.2□□□□□ -0.3
USP54-206ENST00000433394 BCL11BQ9C0K0 894 aaPredicted RBP13.17□□□□□ -0.3
USP54-206ENST00000433394 EVX2Q03828 476 aa13.16□□□□□ -0.3
USP54-206ENST00000433394 ZNF467Q7Z7K2 595 aaPredicted RBP13.16□□□□□ -0.3
USP54-206ENST00000433394 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.15□□□□□ -0.3
USP54-206ENST00000433394 NBR1Q14596 966 aa13.15□□□□□ -0.3
USP54-206ENST00000433394 ZFP91Q96JP5 570 aaPredicted RBP13.15□□□□□ -0.3
USP54-206ENST00000433394 TSPYL2Q9H2G4 693 aaPredicted RBP13.15□□□□□ -0.3
USP54-206ENST00000433394 PAK3O75914 559 aaPredicted RBP13.13□□□□□ -0.31
USP54-206ENST00000433394 CHADLQ6NUI6 762 aa13.13□□□□□ -0.31
USP54-206ENST00000433394 FARP1Q9Y4F1 1045 aaPredicted RBP13.13□□□□□ -0.31
USP54-206ENST00000433394 GTPBP6O43824 516 aaPredicted RBP13.1□□□□□ -0.31
USP54-206ENST00000433394 NKX1-1Q15270 411 aaPredicted RBP13.1□□□□□ -0.31
USP54-206ENST00000433394 PDAP1Q13442 181 aaKnown RBP13.05□□□□□ -0.32
USP54-206ENST00000433394 C19orf67A6NJJ6 358 aa13.01□□□□□ -0.33
USP54-206ENST00000433394 TPRNQ4KMQ1 711 aa12.99□□□□□ -0.33
USP54-206ENST00000433394 ZNF579Q8NAF0 562 aaKnown RBP12.97□□□□□ -0.33
USP54-206ENST00000433394 PRKCSHP14314 528 aaPredicted RBP12.95□□□□□ -0.34
USP54-206ENST00000433394 CCDC61Q9Y6R9 512 aa12.94□□□□□ -0.34
USP54-206ENST00000433394 PSEN1P49768 467 aa12.93□□□□□ -0.34
USP54-206ENST00000433394 PCDHB8Q9UN66 801 aa12.93□□□□□ -0.34
USP54-206ENST00000433394 PCDHB13Q9Y5F0 798 aa12.93□□□□□ -0.34
USP54-206ENST00000433394 WDR70Q9NW82 654 aa12.92□□□□□ -0.34
USP54-206ENST00000433394 P3H3Q8IVL6 736 aa12.91□□□□□ -0.34
USP54-206ENST00000433394 GABBR2O75899 941 aa12.85□□□□□ -0.35
USP54-206ENST00000433394 NLRP6P59044 892 aa12.8□□□□□ -0.36
USP54-206ENST00000433394 IFNL1Q8IU54 200 aa12.8□□□□□ -0.36
USP54-206ENST00000433394 MAP3K13O43283 966 aa12.79□□□□□ -0.36
USP54-206ENST00000433394 ZRANB1Q9UGI0 708 aa12.79□□□□□ -0.36
USP54-206ENST00000433394 SOX12O15370 315 aa12.78□□□□□ -0.36
USP54-206ENST00000433394 GOLGA2Q08379 1002 aa12.78□□□□□ -0.36
USP54-206ENST00000433394 KIF12Q96FN5 646 aa12.78□□□□□ -0.36
USP54-206ENST00000433394 CD44P16070 742 aaKnown RBP12.77□□□□□ -0.37
USP54-206ENST00000433394 CABP2Q9NPB3 220 aa12.77□□□□□ -0.37
USP54-206ENST00000433394 MFRPQ9BY79 579 aa12.75□□□□□ -0.37
USP54-206ENST00000433394 TULP1O00294 542 aaPredicted RBP12.73□□□□□ -0.37
USP54-206ENST00000433394 EFCAB3Q8N7B9 438 aa12.72□□□□□ -0.37
USP54-206ENST00000433394 PHF8Q9UPP1 1060 aa12.65□□□□□ -0.38
USP54-206ENST00000433394 CADPS2Q86UW7 1296 aa12.64□□□□□ -0.39
USP54-206ENST00000433394 FBXO22Q8NEZ5 403 aa12.63□□□□□ -0.39
USP54-206ENST00000433394 PHF12Q96QT6 1004 aa12.63□□□□□ -0.39
USP54-206ENST00000433394 MKRN3Q13064 507 aaKnown RBP12.62□□□□□ -0.39
USP54-206ENST00000433394 KCNV2Q8TDN2 545 aa12.61□□□□□ -0.39
USP54-206ENST00000433394 TMEM106CQ9BVX2 250 aa12.61□□□□□ -0.39
USP54-206ENST00000433394 CLCN6P51797 869 aa12.59□□□□□ -0.39
USP54-206ENST00000433394 POTEIP0CG38 1075 aa12.58□□□□□ -0.4
USP54-206ENST00000433394 E2F4Q16254 413 aa12.58□□□□□ -0.4
USP54-206ENST00000433394 PPP1R37O75864 691 aa12.57□□□□□ -0.4
USP54-206ENST00000433394 PDE4AP27815 886 aa12.57□□□□□ -0.4
USP54-206ENST00000433394 ARHGEF1Q92888 912 aaKnown RBP12.57□□□□□ -0.4
USP54-206ENST00000433394 LHX8Q68G74 356 aa12.55□□□□□ -0.4
USP54-206ENST00000433394 MS4A3Q96HJ5 214 aa12.51□□□□□ -0.41
USP54-206ENST00000433394 TIE1P35590 1138 aa12.5□□□□□ -0.41
USP54-206ENST00000433394 LARP6Q9BRS8 491 aaKnown RBP12.5□□□□□ -0.41
USP54-206ENST00000433394 LMOD2Q6P5Q4 547 aa12.49□□□□□ -0.41
USP54-206ENST00000433394 DCBLD2Q96PD2 775 aa12.49□□□□□ -0.41
USP54-206ENST00000433394 SMYD5Q6GMV2 418 aa12.47□□□□□ -0.41
USP54-206ENST00000433394 DDX27Q96GQ7 796 aaKnown RBP12.46□□□□□ -0.41
USP54-206ENST00000433394 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.44□□□□□ -0.42
USP54-206ENST00000433394 MS4A4AQ96JQ5 239 aa12.44□□□□□ -0.42
USP54-206ENST00000433394 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.44□□□□□ -0.42
USP54-206ENST00000433394 GALR2O43603 387 aaPredicted RBP12.43□□□□□ -0.42
USP54-206ENST00000433394 NCKAP5LQ9HCH0 1330 aa12.4□□□□□ -0.42
USP54-206ENST00000433394 TTLL13PA6NNM8 815 aa12.4□□□□□ -0.42
USP54-206ENST00000433394 MFSD10Q14728 455 aa12.4□□□□□ -0.42
USP54-206ENST00000433394 CRISPLD2Q9H0B8 497 aa12.39□□□□□ -0.43
USP54-206ENST00000433394 TRPC6Q9Y210 931 aa12.38□□□□□ -0.43
USP54-206ENST00000433394 G3V3G9 751 aa12.37□□□□□ -0.43
USP54-206ENST00000433394 TRIM35Q9UPQ4 493 aa12.35□□□□□ -0.43
USP54-206ENST00000433394 TESPA1A2RU30 521 aaPredicted RBP12.34□□□□□ -0.43
USP54-206ENST00000433394 SEMA3EO15041 775 aa12.34□□□□□ -0.43
USP54-206ENST00000433394 BMP2KQ9NSY1 1161 aaPredicted RBP12.34□□□□□ -0.43
USP54-206ENST00000433394 ARIH1Q9Y4X5 557 aaPredicted RBP12.32□□□□□ -0.44
USP54-206ENST00000433394 PPP1R15BQ5SWA1 713 aa12.3□□□□□ -0.44
USP54-206ENST00000433394 TMC2Q8TDI7 906 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms