RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 CIZ1Q9ULV3 898 aaPredicted RBP8.71□□□□□ -1.02
HMGB3-203ENST00000430118 GSE1Q14687 1217 aa8.7□□□□□ -1.02
HMGB3-203ENST00000430118 HS6ST3Q8IZP7 471 aa8.7□□□□□ -1.02
HMGB3-203ENST00000430118 SPDYE1Q8NFV5 336 aaPredicted RBP8.7□□□□□ -1.02
HMGB3-203ENST00000430118 CLEC11AQ9Y240 323 aa8.7□□□□□ -1.02
HMGB3-203ENST00000430118 CHGAP10645 457 aaKnown RBP8.69□□□□□ -1.02
HMGB3-203ENST00000430118 SP7Q8TDD2 431 aaPredicted RBP8.68□□□□□ -1.02
HMGB3-203ENST00000430118 HAX1O00165 279 aa8.67□□□□□ -1.02
HMGB3-203ENST00000430118 TSHZ2Q9NRE2 1034 aa8.64□□□□□ -1.03
HMGB3-203ENST00000430118 PRKCSHP14314 528 aaPredicted RBP8.63□□□□□ -1.03
HMGB3-203ENST00000430118 PRKAR2AP13861 404 aaKnown RBP8.62□□□□□ -1.03
HMGB3-203ENST00000430118 TPRNQ4KMQ1 711 aa8.61□□□□□ -1.03
HMGB3-203ENST00000430118 NUBP1P53384 320 aa8.58□□□□□ -1.04
HMGB3-203ENST00000430118 RIOK3O14730 519 aaKnown RBP8.57□□□□□ -1.04
HMGB3-203ENST00000430118 PRR29P0C7W0 189 aa8.56□□□□□ -1.04
HMGB3-203ENST00000430118 NBR1Q14596 966 aa8.56□□□□□ -1.04
HMGB3-203ENST00000430118 RNF25Q96BH1 459 aaPredicted RBP8.56□□□□□ -1.04
HMGB3-203ENST00000430118 CHRM1P11229 460 aaPredicted RBP8.55□□□□□ -1.04
HMGB3-203ENST00000430118 EVX2Q03828 476 aa8.55□□□□□ -1.04
HMGB3-203ENST00000430118 FAM212AQ96EL1 285 aa8.54□□□□□ -1.04
HMGB3-203ENST00000430118 SGIP1Q9BQI5 828 aa8.54□□□□□ -1.04
HMGB3-203ENST00000430118 RYDENQ9NUL5 291 aaKnown RBP8.54□□□□□ -1.04
HMGB3-203ENST00000430118 NISCHQ9Y2I1 1504 aa8.54□□□□□ -1.04
HMGB3-203ENST00000430118 VGFO15240 615 aaPredicted RBP8.53□□□□□ -1.04
HMGB3-203ENST00000430118 DCAF8Q5TAQ9 597 aa8.51□□□□□ -1.05
HMGB3-203ENST00000430118 CHADLQ6NUI6 762 aa8.51□□□□□ -1.05
HMGB3-203ENST00000430118 C19orf67A6NJJ6 358 aa8.48□□□□□ -1.05
HMGB3-203ENST00000430118 GTPBP6O43824 516 aaPredicted RBP8.48□□□□□ -1.05
HMGB3-203ENST00000430118 NKX1-1Q15270 411 aaPredicted RBP8.48□□□□□ -1.05
HMGB3-203ENST00000430118 STK25O00506 426 aa8.46□□□□□ -1.06
HMGB3-203ENST00000430118 MNX1P50219 401 aaPredicted RBP8.46□□□□□ -1.06
HMGB3-203ENST00000430118 CREBZFQ9NS37 354 aa8.46□□□□□ -1.06
HMGB3-203ENST00000430118 P3H3Q8IVL6 736 aa8.39□□□□□ -1.07
HMGB3-203ENST00000430118 FARP1Q9Y4F1 1045 aaPredicted RBP8.39□□□□□ -1.07
HMGB3-203ENST00000430118 RASEFQ8IZ41 740 aa8.38□□□□□ -1.07
HMGB3-203ENST00000430118 BCL11BQ9C0K0 894 aaPredicted RBP8.38□□□□□ -1.07
HMGB3-203ENST00000430118 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.37□□□□□ -1.07
HMGB3-203ENST00000430118 ZFP91Q96JP5 570 aaPredicted RBP8.37□□□□□ -1.07
HMGB3-203ENST00000430118 STK24Q9Y6E0 443 aa8.37□□□□□ -1.07
HMGB3-203ENST00000430118 GABBR2O75899 941 aa8.36□□□□□ -1.07
HMGB3-203ENST00000430118 CD44P16070 742 aaKnown RBP8.34□□□□□ -1.07
HMGB3-203ENST00000430118 ZNF467Q7Z7K2 595 aaPredicted RBP8.34□□□□□ -1.07
HMGB3-203ENST00000430118 ERICH6Q7L0X2 663 aa8.31□□□□□ -1.08
HMGB3-203ENST00000430118 PYGBP11216 843 aa8.3□□□□□ -1.08
HMGB3-203ENST00000430118 PDAP1Q13442 181 aaKnown RBP8.27□□□□□ -1.09
HMGB3-203ENST00000430118 CLCN6P51797 869 aa8.26□□□□□ -1.09
HMGB3-203ENST00000430118 WDR70Q9NW82 654 aa8.25□□□□□ -1.09
HMGB3-203ENST00000430118 ZRANB1Q9UGI0 708 aa8.23□□□□□ -1.09
HMGB3-203ENST00000430118 TMEM132AQ24JP5 1023 aa8.22□□□□□ -1.09
HMGB3-203ENST00000430118 ZNF579Q8NAF0 562 aaKnown RBP8.21□□□□□ -1.1
HMGB3-203ENST00000430118 TULP1O00294 542 aaPredicted RBP8.19□□□□□ -1.1
HMGB3-203ENST00000430118 KCNV2Q8TDN2 545 aa8.19□□□□□ -1.1
HMGB3-203ENST00000430118 PAK3O75914 559 aaPredicted RBP8.18□□□□□ -1.1
HMGB3-203ENST00000430118 POTEIP0CG38 1075 aa8.17□□□□□ -1.1
HMGB3-203ENST00000430118 GTF3C3Q9Y5Q9 886 aa8.17□□□□□ -1.1
HMGB3-203ENST00000430118 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.16□□□□□ -1.1
HMGB3-203ENST00000430118 ARHGEF1Q92888 912 aaKnown RBP8.16□□□□□ -1.1
HMGB3-203ENST00000430118 TSPYL2Q9H2G4 693 aaPredicted RBP8.16□□□□□ -1.1
HMGB3-203ENST00000430118 CCDC61Q9Y6R9 512 aa8.16□□□□□ -1.1
HMGB3-203ENST00000430118 PSEN1P49768 467 aa8.15□□□□□ -1.1
HMGB3-203ENST00000430118 LHX8Q68G74 356 aa8.15□□□□□ -1.1
HMGB3-203ENST00000430118 LMOD2Q6P5Q4 547 aa8.15□□□□□ -1.1
HMGB3-203ENST00000430118 CADPS2Q86UW7 1296 aa8.15□□□□□ -1.1
HMGB3-203ENST00000430118 DCBLD2Q96PD2 775 aa8.15□□□□□ -1.1
HMGB3-203ENST00000430118 MFRPQ9BY79 579 aa8.15□□□□□ -1.1
HMGB3-203ENST00000430118 SOX12O15370 315 aa8.13□□□□□ -1.11
HMGB3-203ENST00000430118 NLRP6P59044 892 aa8.12□□□□□ -1.11
HMGB3-203ENST00000430118 GALR2O43603 387 aaPredicted RBP8.11□□□□□ -1.11
HMGB3-203ENST00000430118 PCDHB8Q9UN66 801 aa8.11□□□□□ -1.11
HMGB3-203ENST00000430118 PCDHB13Q9Y5F0 798 aa8.11□□□□□ -1.11
HMGB3-203ENST00000430118 TIMELESSQ9UNS1 1208 aa8.1□□□□□ -1.11
HMGB3-203ENST00000430118 E2F4Q16254 413 aa8.09□□□□□ -1.11
HMGB3-203ENST00000430118 FBXO22Q8NEZ5 403 aa8.09□□□□□ -1.11
HMGB3-203ENST00000430118 PHF12Q96QT6 1004 aa8.09□□□□□ -1.11
HMGB3-203ENST00000430118 ABCC9O60706 1549 aa8.05□□□□□ -1.12
HMGB3-203ENST00000430118 ARIH1Q9Y4X5 557 aaPredicted RBP8.05□□□□□ -1.12
HMGB3-203ENST00000430118 TESPA1A2RU30 521 aaPredicted RBP8.04□□□□□ -1.12
HMGB3-203ENST00000430118 IFNL1Q8IU54 200 aa8.04□□□□□ -1.12
HMGB3-203ENST00000430118 SMYD5Q6GMV2 418 aa8.03□□□□□ -1.12
HMGB3-203ENST00000430118 EFCAB3Q8N7B9 438 aa8.03□□□□□ -1.12
HMGB3-203ENST00000430118 KIF12Q96FN5 646 aa8.03□□□□□ -1.12
HMGB3-203ENST00000430118 PDE4AP27815 886 aa8.02□□□□□ -1.13
HMGB3-203ENST00000430118 MFSD10Q14728 455 aa8.02□□□□□ -1.13
HMGB3-203ENST00000430118 CABP2Q9NPB3 220 aa8.02□□□□□ -1.13
HMGB3-203ENST00000430118 PPP1R37O75864 691 aa8.01□□□□□ -1.13
HMGB3-203ENST00000430118 ZC3H15Q8WU90 426 aaKnown RBP8.01□□□□□ -1.13
HMGB3-203ENST00000430118 PHF8Q9UPP1 1060 aa8.01□□□□□ -1.13
HMGB3-203ENST00000430118 MAP3K13O43283 966 aa8□□□□□ -1.13
HMGB3-203ENST00000430118 BRPF1P55201 1214 aaPredicted RBP8□□□□□ -1.13
HMGB3-203ENST00000430118 ARXQ96QS3 562 aa8□□□□□ -1.13
HMGB3-203ENST00000430118 MS4A3Q96HJ5 214 aa7.99□□□□□ -1.13
HMGB3-203ENST00000430118 DAXXQ9UER7 740 aaPredicted RBP7.99□□□□□ -1.13
HMGB3-203ENST00000430118 CRISPLD2Q9H0B8 497 aa7.98□□□□□ -1.13
HMGB3-203ENST00000430118 NCKAP5LQ9HCH0 1330 aa7.97□□□□□ -1.13
HMGB3-203ENST00000430118 SEMA3EO15041 775 aa7.96□□□□□ -1.14
HMGB3-203ENST00000430118 CAMK2BQ13554 666 aa7.96□□□□□ -1.14
HMGB3-203ENST00000430118 PELP1Q8IZL8 1130 aaKnown RBP7.95□□□□□ -1.14
HMGB3-203ENST00000430118 DDX27Q96GQ7 796 aaKnown RBP7.95□□□□□ -1.14
HMGB3-203ENST00000430118 ZMYND10O75800 440 aa7.94□□□□□ -1.14
HMGB3-203ENST00000430118 ASTLQ6HA08 431 aaPredicted RBP7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms