RNA–Protein interactions for RNA: ENST00000427534.6

SPG11-202, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SPG11, Length 6,935 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-202ENST00000427534 NBR1Q14596 966 aa17.77■□□□□ 0.43
SPG11-202ENST00000427534 RRP7BPQ9NSQ0 103 aa17.77■□□□□ 0.43
SPG11-202ENST00000427534 EIF5BO60841 1220 aaKnown RBP17.74■□□□□ 0.43
SPG11-202ENST00000427534 WDR43Q15061 677 aaKnown RBP eCLIP17.74■□□□□ 0.43
SPG11-202ENST00000427534 ACIN1Q9UKV3 1341 aaKnown RBP17.74■□□□□ 0.43
SPG11-202ENST00000427534 DCAF1Q9Y4B6 1507 aa17.73■□□□□ 0.43
SPG11-202ENST00000427534 MLECQ14165 292 aa17.68■□□□□ 0.42
SPG11-202ENST00000427534 LAS1LQ9Y4W2 734 aaKnown RBP17.67■□□□□ 0.42
SPG11-202ENST00000427534 SOX12O15370 315 aa17.67■□□□□ 0.42
SPG11-202ENST00000427534 NPHP1O15259 732 aa17.66■□□□□ 0.42
SPG11-202ENST00000427534 TSPY4P0CV99 314 aa17.66■□□□□ 0.42
SPG11-202ENST00000427534 TSPY10P0CW01 314 aa17.66■□□□□ 0.42
SPG11-202ENST00000427534 TNNT2P45379 298 aaPredicted RBP17.65■□□□□ 0.42
SPG11-202ENST00000427534 NCBP3Q53F19 620 aaKnown RBP17.64■□□□□ 0.42
SPG11-202ENST00000427534 CCDC180Q9P1Z9 1646 aa17.63■□□□□ 0.41
SPG11-202ENST00000427534 UPF2Q9HAU5 1272 aaKnown RBP17.63■□□□□ 0.41
SPG11-202ENST00000427534 NEUROD2Q15784 382 aa17.61■□□□□ 0.41
SPG11-202ENST00000427534 ANP32BQ92688 251 aaKnown RBP17.61■□□□□ 0.41
SPG11-202ENST00000427534 MRS2Q9HD23 443 aa17.59■□□□□ 0.41
SPG11-202ENST00000427534 CCDC136Q96JN2 1154 aa17.58■□□□□ 0.41
SPG11-202ENST00000427534 MTUS2Q5JR59 1369 aa17.54■□□□□ 0.4
SPG11-202ENST00000427534 AMER1Q5JTC6 1135 aaPredicted RBP17.54■□□□□ 0.4
SPG11-202ENST00000427534 MYH16Q9H6N6 1097 aa17.52■□□□□ 0.39
SPG11-202ENST00000427534 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.51■□□□□ 0.39
SPG11-202ENST00000427534 CDK11BP21127 795 aaKnown RBP17.5■□□□□ 0.39
SPG11-202ENST00000427534 CLIP1P30622 1438 aa17.5■□□□□ 0.39
SPG11-202ENST00000427534 SAFB2Q14151 953 aaKnown RBP eCLIP17.5■□□□□ 0.39
SPG11-202ENST00000427534 RSF1Q96T23 1441 aaPredicted RBP17.48■□□□□ 0.39
SPG11-202ENST00000427534 RB1CC1Q8TDY2 1594 aa17.44■□□□□ 0.38
SPG11-202ENST00000427534 NCLP19338 710 aaKnown RBP17.43■□□□□ 0.38
SPG11-202ENST00000427534 POGKQ9P215 609 aa17.41■□□□□ 0.38
SPG11-202ENST00000427534 PLEKHD1A6NEE1 506 aa17.4■□□□□ 0.38
SPG11-202ENST00000427534 CC2D1BQ5T0F9 858 aaKnown RBP17.4■□□□□ 0.38
SPG11-202ENST00000427534 MYO15BQ96JP2 1530 aa17.39■□□□□ 0.37
SPG11-202ENST00000427534 NAP1L2Q9ULW6 460 aaPredicted RBP17.39■□□□□ 0.37
SPG11-202ENST00000427534 EEA1Q15075 1411 aa17.38■□□□□ 0.37
SPG11-202ENST00000427534 GOLGA3Q08378 1498 aa17.37■□□□□ 0.37
SPG11-202ENST00000427534 ERCC6Q03468 1493 aa17.36■□□□□ 0.37
SPG11-202ENST00000427534 CEP162Q5TB80 1403 aa17.36■□□□□ 0.37
SPG11-202ENST00000427534 MIER1Q8N108 512 aa17.35■□□□□ 0.37
SPG11-202ENST00000427534 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.35■□□□□ 0.37
SPG11-202ENST00000427534 U2SURPO15042 1029 aaKnown RBP17.34■□□□□ 0.37
SPG11-202ENST00000427534 ISY1Q9ULR0 285 aaKnown RBP17.34■□□□□ 0.37
SPG11-202ENST00000427534 ZNF330Q9Y3S2 320 aaPredicted RBP17.34■□□□□ 0.37
SPG11-202ENST00000427534 FRAT1Q92837 279 aaPredicted RBP17.33■□□□□ 0.37
SPG11-202ENST00000427534 WRNQ14191 1432 aaPredicted RBP eCLIP17.33■□□□□ 0.36
SPG11-202ENST00000427534 CLSTN1O94985 981 aa17.33■□□□□ 0.36
SPG11-202ENST00000427534 STK26Q9P289 416 aa17.32■□□□□ 0.36
SPG11-202ENST00000427534 CFDP1Q9UEE9 299 aaPredicted RBP17.3■□□□□ 0.36
SPG11-202ENST00000427534 OS9Q13438 667 aaPredicted RBP17.3■□□□□ 0.36
SPG11-202ENST00000427534 FTSJ3Q8IY81 847 aaKnown RBP17.3■□□□□ 0.36
SPG11-202ENST00000427534 EIF4G2P78344 907 aaKnown RBP eCLIP17.29■□□□□ 0.36
SPG11-202ENST00000427534 PAK3O75914 559 aaPredicted RBP17.28■□□□□ 0.36
SPG11-202ENST00000427534 CARD11Q9BXL7 1154 aa17.28■□□□□ 0.36
SPG11-202ENST00000427534 CCDC9Q9Y3X0 531 aaKnown RBP17.28■□□□□ 0.36
SPG11-202ENST00000427534 KNSTRNQ9Y448 316 aa17.28■□□□□ 0.36
SPG11-202ENST00000427534 BAZ1BQ9UIG0 1483 aaKnown RBP17.27■□□□□ 0.35
SPG11-202ENST00000427534 NACADO15069 1562 aa17.27■□□□□ 0.35
SPG11-202ENST00000427534 GOLGA2Q08379 1002 aa17.26■□□□□ 0.35
SPG11-202ENST00000427534 PLCB2Q00722 1185 aa17.25■□□□□ 0.35
SPG11-202ENST00000427534 NUTM2DQ5VT03 806 aaPredicted RBP17.25■□□□□ 0.35
SPG11-202ENST00000427534 SIN3AQ96ST3 1273 aa17.24■□□□□ 0.35
SPG11-202ENST00000427534 RGS3P49796 1198 aa17.23■□□□□ 0.35
SPG11-202ENST00000427534 TNIKQ9UKE5 1360 aa17.23■□□□□ 0.35
SPG11-202ENST00000427534 MAPK8IP3Q9UPT6 1336 aa17.23■□□□□ 0.35
SPG11-202ENST00000427534 CFAP53Q96M91 514 aa17.23■□□□□ 0.35
SPG11-202ENST00000427534 EIF4G1Q04637 1599 aaKnown RBP17.22■□□□□ 0.35
SPG11-202ENST00000427534 APBB1O00213 710 aa17.22■□□□□ 0.35
SPG11-202ENST00000427534 KIF27Q86VH2 1401 aa17.22■□□□□ 0.35
SPG11-202ENST00000427534 GGT6Q6P531 493 aa17.21■□□□□ 0.35
SPG11-202ENST00000427534 SPRYD3Q8NCJ5 442 aa17.21■□□□□ 0.35
SPG11-202ENST00000427534 SRPK2P78362 688 aaKnown RBP17.2■□□□□ 0.34
SPG11-202ENST00000427534 CEP164Q9UPV0 1460 aa17.19■□□□□ 0.34
SPG11-202ENST00000427534 ANO8Q9HCE9 1232 aaPredicted RBP17.18■□□□□ 0.34
SPG11-202ENST00000427534 FGD1P98174 961 aa17.17■□□□□ 0.34
SPG11-202ENST00000427534 NUTM2FA1L443 756 aa17.16■□□□□ 0.34
SPG11-202ENST00000427534 SUPT16HQ9Y5B9 1047 aaKnown RBP17.16■□□□□ 0.34
SPG11-202ENST00000427534 ZRSR1Q15695 479 aaKnown RBP17.16■□□□□ 0.34
SPG11-202ENST00000427534 FOXD1Q16676 465 aa17.16■□□□□ 0.34
SPG11-202ENST00000427534 KCNJ4P48050 445 aa17.14■□□□□ 0.33
SPG11-202ENST00000427534 CSB-PGBD3P0DP91 1061 aa17.13■□□□□ 0.33
SPG11-202ENST00000427534 PTMAP06454 111 aaKnown RBP17.13■□□□□ 0.33
SPG11-202ENST00000427534 DCAF11Q8TEB1 546 aa17.12■□□□□ 0.33
SPG11-202ENST00000427534 CASC1Q6TDU7 716 aa17.11■□□□□ 0.33
SPG11-202ENST00000427534 RTN4Q9NQC3 1192 aaKnown RBP17.1■□□□□ 0.33
SPG11-202ENST00000427534 BAZ1AQ9NRL2 1556 aaPredicted RBP17.09■□□□□ 0.33
SPG11-202ENST00000427534 DNTTIP2Q5QJE6 756 aaKnown RBP17.08■□□□□ 0.32
SPG11-202ENST00000427534 CECR2Q9BXF3 1484 aa17.08■□□□□ 0.32
SPG11-202ENST00000427534 TRIM44Q96DX7 344 aaPredicted RBP17.05■□□□□ 0.32
SPG11-202ENST00000427534 PDE4CQ08493 712 aa17.05■□□□□ 0.32
SPG11-202ENST00000427534 NUDCQ9Y266 331 aa17.05■□□□□ 0.32
SPG11-202ENST00000427534 BECN1Q14457 450 aa17.04■□□□□ 0.32
SPG11-202ENST00000427534 LTV1Q96GA3 475 aaPredicted RBP17.01■□□□□ 0.31
SPG11-202ENST00000427534 CHMP3Q9Y3E7 222 aa17.01■□□□□ 0.31
SPG11-202ENST00000427534 ERICH6BQ5W0A0 696 aa17■□□□□ 0.31
SPG11-202ENST00000427534 HSP90AB1P08238 724 aaKnown RBP16.99■□□□□ 0.31
SPG11-202ENST00000427534 B4GALNT3Q6L9W6 998 aa16.99■□□□□ 0.31
SPG11-202ENST00000427534 GOLGA6L22H0YM25 854 aa16.98■□□□□ 0.31
SPG11-202ENST00000427534 SOGA1O94964 1423 aa16.98■□□□□ 0.31
SPG11-202ENST00000427534 CDCA8Q53HL2 280 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 871.1 ms