RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 PKD2Q13563 968 aa6.24□□□□□ -1.41
VPS13A-208ENST00000423463 PAK3O75914 559 aaPredicted RBP6.24□□□□□ -1.41
VPS13A-208ENST00000423463 PYGBP11216 843 aa6.24□□□□□ -1.41
VPS13A-208ENST00000423463 PHF12Q96QT6 1004 aa6.23□□□□□ -1.41
VPS13A-208ENST00000423463 CCDC61Q9Y6R9 512 aa6.23□□□□□ -1.41
VPS13A-208ENST00000423463 GSE1Q14687 1217 aa6.21□□□□□ -1.42
VPS13A-208ENST00000423463 AMER1Q5JTC6 1135 aaPredicted RBP6.21□□□□□ -1.42
VPS13A-208ENST00000423463 ECM2O94769 699 aaPredicted RBP6.19□□□□□ -1.42
VPS13A-208ENST00000423463 MAP3K13O43283 966 aa6.17□□□□□ -1.42
VPS13A-208ENST00000423463 ZNF579Q8NAF0 562 aaKnown RBP6.17□□□□□ -1.42
VPS13A-208ENST00000423463 RNF25Q96BH1 459 aaPredicted RBP6.17□□□□□ -1.42
VPS13A-208ENST00000423463 RGL2O15211 777 aa6.16□□□□□ -1.42
VPS13A-208ENST00000423463 KIF12Q96FN5 646 aa6.16□□□□□ -1.42
VPS13A-208ENST00000423463 PCDHB13Q9Y5F0 798 aa6.15□□□□□ -1.43
VPS13A-208ENST00000423463 GALR2O43603 387 aaPredicted RBP6.14□□□□□ -1.43
VPS13A-208ENST00000423463 MS4A3Q96HJ5 214 aa6.14□□□□□ -1.43
VPS13A-208ENST00000423463 PCDHB8Q9UN66 801 aa6.14□□□□□ -1.43
VPS13A-208ENST00000423463 IFNL1Q8IU54 200 aa6.14□□□□□ -1.43
VPS13A-208ENST00000423463 SP7Q8TDD2 431 aaPredicted RBP6.13□□□□□ -1.43
VPS13A-208ENST00000423463 DCAF8L2P0C7V8 631 aa6.12□□□□□ -1.43
VPS13A-208ENST00000423463 TRPC6Q9Y210 931 aa6.12□□□□□ -1.43
VPS13A-208ENST00000423463 GABBR2O75899 941 aa6.12□□□□□ -1.43
VPS13A-208ENST00000423463 TRIM41Q8WV44 630 aa6.11□□□□□ -1.43
VPS13A-208ENST00000423463 CHRM1P11229 460 aaPredicted RBP6.1□□□□□ -1.43
VPS13A-208ENST00000423463 RIOK3O14730 519 aaKnown RBP6.08□□□□□ -1.44
VPS13A-208ENST00000423463 ZNF467Q7Z7K2 595 aaPredicted RBP6.07□□□□□ -1.44
VPS13A-208ENST00000423463 SGIP1Q9BQI5 828 aa6.05□□□□□ -1.44
VPS13A-208ENST00000423463 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.05□□□□□ -1.44
VPS13A-208ENST00000423463 ZFP91Q96JP5 570 aaPredicted RBP6.05□□□□□ -1.44
VPS13A-208ENST00000423463 PSEN1P49768 467 aa6.04□□□□□ -1.44
VPS13A-208ENST00000423463 BMP2KQ9NSY1 1161 aaPredicted RBP6.04□□□□□ -1.44
VPS13A-208ENST00000423463 STK25O00506 426 aa6.03□□□□□ -1.44
VPS13A-208ENST00000423463 VGFO15240 615 aaPredicted RBP6.03□□□□□ -1.44
VPS13A-208ENST00000423463 CHGAP10645 457 aaKnown RBP6.03□□□□□ -1.44
VPS13A-208ENST00000423463 PDAP1Q13442 181 aaKnown RBP6.03□□□□□ -1.44
VPS13A-208ENST00000423463 TMEM106CQ9BVX2 250 aa6.03□□□□□ -1.44
VPS13A-208ENST00000423463 TTLL13PA6NNM8 815 aa6.03□□□□□ -1.44
VPS13A-208ENST00000423463 BCL11BQ9C0K0 894 aaPredicted RBP6.03□□□□□ -1.44
VPS13A-208ENST00000423463 DCBLD2Q96PD2 775 aa6.02□□□□□ -1.45
VPS13A-208ENST00000423463 POTEIP0CG38 1075 aa6.01□□□□□ -1.45
VPS13A-208ENST00000423463 CLCN6P51797 869 aa6.01□□□□□ -1.45
VPS13A-208ENST00000423463 ATN1P54259 1190 aaPredicted RBP6.01□□□□□ -1.45
VPS13A-208ENST00000423463 STK24Q9Y6E0 443 aa6.01□□□□□ -1.45
VPS13A-208ENST00000423463 CABP2Q9NPB3 220 aa6□□□□□ -1.45
VPS13A-208ENST00000423463 TIE1P35590 1138 aa6□□□□□ -1.45
VPS13A-208ENST00000423463 TRIM35Q9UPQ4 493 aa6□□□□□ -1.45
VPS13A-208ENST00000423463 ATMINO43313 823 aaPredicted RBP5.99□□□□□ -1.45
VPS13A-208ENST00000423463 PELP1Q8IZL8 1130 aaKnown RBP5.99□□□□□ -1.45
VPS13A-208ENST00000423463 ASTLQ6HA08 431 aaPredicted RBP5.98□□□□□ -1.45
VPS13A-208ENST00000423463 HS6ST3Q8IZP7 471 aa5.97□□□□□ -1.45
VPS13A-208ENST00000423463 TAOK2Q9UL54 1235 aa5.97□□□□□ -1.45
VPS13A-208ENST00000423463 EFCAB3Q8N7B9 438 aa5.96□□□□□ -1.46
VPS13A-208ENST00000423463 GOLGA2Q08379 1002 aa5.96□□□□□ -1.46
VPS13A-208ENST00000423463 NKX1-1Q15270 411 aaPredicted RBP5.94□□□□□ -1.46
VPS13A-208ENST00000423463 MKRN3Q13064 507 aaKnown RBP5.92□□□□□ -1.46
VPS13A-208ENST00000423463 METRNQ9UJH8 293 aa5.91□□□□□ -1.46
VPS13A-208ENST00000423463 PHF8Q9UPP1 1060 aa5.91□□□□□ -1.46
VPS13A-208ENST00000423463 MFRPQ9BY79 579 aa5.91□□□□□ -1.46
VPS13A-208ENST00000423463 COLQQ9Y215 455 aaPredicted RBP5.91□□□□□ -1.46
VPS13A-208ENST00000423463 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.9□□□□□ -1.472e-8■■■■□ 24.3
VPS13A-208ENST00000423463 POTEFA5A3E0 1075 aa5.89□□□□□ -1.47
VPS13A-208ENST00000423463 SEC24BO95487 1268 aa5.88□□□□□ -1.47
VPS13A-208ENST00000423463 IRX5P78411 483 aaPredicted RBP5.88□□□□□ -1.47
VPS13A-208ENST00000423463 SLC39A7Q92504 469 aa5.88□□□□□ -1.47
VPS13A-208ENST00000423463 DPY19L2Q6NUT2 758 aa5.88□□□□□ -1.47
VPS13A-208ENST00000423463 PDCD7Q8N8D1 485 aaKnown RBP5.88□□□□□ -1.47
VPS13A-208ENST00000423463 BBXQ8WY36 941 aaPredicted RBP5.88□□□□□ -1.47
VPS13A-208ENST00000423463 MS4A4AQ96JQ5 239 aa5.88□□□□□ -1.47
VPS13A-208ENST00000423463 FBXO22Q8NEZ5 403 aa5.87□□□□□ -1.47
VPS13A-208ENST00000423463 CFAP44Q96MT7 982 aa5.87□□□□□ -1.47
VPS13A-208ENST00000423463 C7P10643 843 aa5.86□□□□□ -1.47
VPS13A-208ENST00000423463 IER5LQ5T953 404 aa5.86□□□□□ -1.47
VPS13A-208ENST00000423463 PLCG2P16885 1265 aa5.86□□□□□ -1.47
VPS13A-208ENST00000423463 PAXIP1Q6ZW49 1069 aaPredicted RBP5.86□□□□□ -1.47
VPS13A-208ENST00000423463 SOX12O15370 315 aa5.85□□□□□ -1.47
VPS13A-208ENST00000423463 GTPBP6O43824 516 aaPredicted RBP5.85□□□□□ -1.47
VPS13A-208ENST00000423463 DNAJC5Q9H3Z4 198 aa5.85□□□□□ -1.47
VPS13A-208ENST00000423463 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.85□□□□□ -1.47
VPS13A-208ENST00000423463 POTEB2H3BUK9 544 aa5.85□□□□□ -1.47
VPS13A-208ENST00000423463 PPP1R37O75864 691 aa5.85□□□□□ -1.47
VPS13A-208ENST00000423463 OCEL1Q9H607 264 aa5.85□□□□□ -1.47
VPS13A-208ENST00000423463 NLRP6P59044 892 aa5.84□□□□□ -1.47
VPS13A-208ENST00000423463 ILDR1Q86SU0 546 aaPredicted RBP5.84□□□□□ -1.47
VPS13A-208ENST00000423463 SPRYD3Q8NCJ5 442 aa5.82□□□□□ -1.48
VPS13A-208ENST00000423463 NISCHQ9Y2I1 1504 aa5.81□□□□□ -1.48
VPS13A-208ENST00000423463 POTEJP0CG39 1038 aa5.81□□□□□ -1.48
VPS13A-208ENST00000423463 PLCB2Q00722 1185 aa5.8□□□□□ -1.48
VPS13A-208ENST00000423463 MICALL2Q8IY33 904 aa5.78□□□□□ -1.48
VPS13A-208ENST00000423463 BOLA1Q9Y3E2 137 aa5.78□□□□□ -1.48
VPS13A-208ENST00000423463 RYDENQ9NUL5 291 aaKnown RBP5.77□□□□□ -1.49
VPS13A-208ENST00000423463 G3V3G9 751 aa5.76□□□□□ -1.49
VPS13A-208ENST00000423463 LHX8Q68G74 356 aa5.76□□□□□ -1.49
VPS13A-208ENST00000423463 TSHZ2Q9NRE2 1034 aa5.76□□□□□ -1.49
VPS13A-208ENST00000423463 CADPS2Q86UW7 1296 aa5.75□□□□□ -1.49
VPS13A-208ENST00000423463 HAP1P54257 671 aaPredicted RBP5.75□□□□□ -1.49
VPS13A-208ENST00000423463 C3orf67Q6ZVT6 689 aa5.75□□□□□ -1.49
VPS13A-208ENST00000423463 L3MBTL3Q96JM7 780 aaPredicted RBP5.74□□□□□ -1.49
VPS13A-208ENST00000423463 TMEM121BQ9BXQ6 578 aaPredicted RBP5.74□□□□□ -1.49
VPS13A-208ENST00000423463 TMEM92Q6UXU6 159 aa5.73□□□□□ -1.49
VPS13A-208ENST00000423463 OTUD5Q96G74 571 aa5.72□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms