RNA–Protein interactions for RNA: ENST00000414099.6

SCN5A-204, Transcript of sodium voltage-gated channel alpha subunit 5, human

TSL 1 (best) BASIC

Gene SCN5A, Length 8,303 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SCN5A-204	ENST00000414099	ERCC6	Q03468	1493 aa		14.04	□□□□□ -0.16
SCN5A-204	ENST00000414099	CCDC136	Q96JN2	1154 aa		14.02	□□□□□ -0.16
SCN5A-204	ENST00000414099	FKBP8	Q14318	412 aa		14.02	□□□□□ -0.16
SCN5A-204	ENST00000414099	TRIM44	Q96DX7	344 aa	Predicted RBP	14.02	□□□□□ -0.17
SCN5A-204	ENST00000414099	PLEKHD1	A6NEE1	506 aa		14.01	□□□□□ -0.17
SCN5A-204	ENST00000414099	ARID4B	Q4LE39	1312 aa	Predicted RBP	14.01	□□□□□ -0.17
SCN5A-204	ENST00000414099	ZRSR1	Q15695	479 aa	Known RBP	14	□□□□□ -0.17
SCN5A-204	ENST00000414099	EEA1	Q15075	1411 aa		14	□□□□□ -0.17
SCN5A-204	ENST00000414099	HNRNPU	Q00839	825 aa	Known RBP eCLIP	13.99	□□□□□ -0.17
SCN5A-204	ENST00000414099	CASC1	Q6TDU7	716 aa		13.99	□□□□□ -0.17
SCN5A-204	ENST00000414099	CFAP53	Q96M91	514 aa		13.97	□□□□□ -0.17
SCN5A-204	ENST00000414099	BAZ1B	Q9UIG0	1483 aa	Known RBP	13.96	□□□□□ -0.17
SCN5A-204	ENST00000414099	FAM9B	Q8IZU0	186 aa		13.95	□□□□□ -0.18
SCN5A-204	ENST00000414099	CHIC2	Q9UKJ5	165 aa		13.94	□□□□□ -0.18
SCN5A-204	ENST00000414099	DCAF1	Q9Y4B6	1507 aa		13.94	□□□□□ -0.18
SCN5A-204	ENST00000414099	KDM2A	Q9Y2K7	1162 aa		13.94	□□□□□ -0.18
SCN5A-204	ENST00000414099	GOLGA6L6	A8MZA4	724 aa		13.94	□□□□□ -0.18
SCN5A-204	ENST00000414099	HDGF	P51858	240 aa	Known RBP	13.92	□□□□□ -0.18
SCN5A-204	ENST00000414099	ZBTB7C	A1YPR0	619 aa		13.91	□□□□□ -0.18
SCN5A-204	ENST00000414099	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
SCN5A-204	ENST00000414099	CLIP1	P30622	1438 aa		13.9	□□□□□ -0.18
SCN5A-204	ENST00000414099	PNN	Q9H307	717 aa	Known RBP	13.9	□□□□□ -0.18
SCN5A-204	ENST00000414099	GOLGA3	Q08378	1498 aa		13.89	□□□□□ -0.19
SCN5A-204	ENST00000414099	KCNH8	Q96L42	1107 aa		13.89	□□□□□ -0.19
SCN5A-204	ENST00000414099	CHMP4B	Q9H444	224 aa	Known RBP	13.89	□□□□□ -0.19
SCN5A-204	ENST00000414099	KIF27	Q86VH2	1401 aa		13.88	□□□□□ -0.19
SCN5A-204	ENST00000414099	NBR1	Q14596	966 aa		13.87	□□□□□ -0.19
SCN5A-204	ENST00000414099	NPHP1	O15259	732 aa		13.86	□□□□□ -0.19
SCN5A-204	ENST00000414099	KANK1	Q14678	1352 aa		13.86	□□□□□ -0.19
SCN5A-204	ENST00000414099	PTMA	P06454	111 aa	Known RBP	13.86	□□□□□ -0.19
SCN5A-204	ENST00000414099	DDX10	Q13206	875 aa	Known RBP	13.86	□□□□□ -0.19
SCN5A-204	ENST00000414099	MRS2	Q9HD23	443 aa		13.86	□□□□□ -0.19
SCN5A-204	ENST00000414099	NRDC	O43847	1150 aa		13.85	□□□□□ -0.19
SCN5A-204	ENST00000414099	KNSTRN	Q9Y448	316 aa		13.84	□□□□□ -0.19
SCN5A-204	ENST00000414099	SALL2	Q9Y467	1007 aa	Predicted RBP	13.84	□□□□□ -0.19
SCN5A-204	ENST00000414099	L1TD1	Q5T7N2	865 aa	Known RBP	13.82	□□□□□ -0.2
SCN5A-204	ENST00000414099	NUDC	Q9Y266	331 aa		13.82	□□□□□ -0.2
SCN5A-204	ENST00000414099	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.82	□□□□□ -0.2
SCN5A-204	ENST00000414099	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.8	□□□□□ -0.2
SCN5A-204	ENST00000414099	ERICH6B	Q5W0A0	696 aa		13.8	□□□□□ -0.2
SCN5A-204	ENST00000414099	ARX	Q96QS3	562 aa		13.8	□□□□□ -0.2
SCN5A-204	ENST00000414099	POGK	Q9P215	609 aa		13.79	□□□□□ -0.2
SCN5A-204	ENST00000414099	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	13.79	□□□□□ -0.2
SCN5A-204	ENST00000414099	PPM1G	O15355	546 aa	Predicted RBP	13.79	□□□□□ -0.2
SCN5A-204	ENST00000414099	MS4A1	P11836	297 aa		13.79	□□□□□ -0.2
SCN5A-204	ENST00000414099	MAPK8IP3	Q9UPT6	1336 aa		13.78	□□□□□ -0.2
SCN5A-204	ENST00000414099	FTSJ3	Q8IY81	847 aa	Known RBP	13.78	□□□□□ -0.2
SCN5A-204	ENST00000414099	FHAD1	B1AJZ9	1412 aa		13.78	□□□□□ -0.2
SCN5A-204	ENST00000414099	CEP164	Q9UPV0	1460 aa		13.77	□□□□□ -0.21
SCN5A-204	ENST00000414099	CFAP44	Q96MT7	982 aa		13.76	□□□□□ -0.21
SCN5A-204	ENST00000414099	GOLGA2	Q08379	1002 aa		13.76	□□□□□ -0.21
SCN5A-204	ENST00000414099	RRP7BP	Q9NSQ0	103 aa		13.75	□□□□□ -0.21
SCN5A-204	ENST00000414099	WRN	Q14191	1432 aa	Predicted RBP eCLIP	13.74	□□□□□ -0.21
SCN5A-204	ENST00000414099	PLEKHG5	O94827	1062 aa		13.73	□□□□□ -0.21
SCN5A-204	ENST00000414099	CHAF1A	Q13111	956 aa	Predicted RBP	13.73	□□□□□ -0.21
SCN5A-204	ENST00000414099	LMOD2	Q6P5Q4	547 aa		13.71	□□□□□ -0.22
SCN5A-204	ENST00000414099	TRH	P20396	242 aa	Predicted RBP	13.7	□□□□□ -0.22
SCN5A-204	ENST00000414099	RGL3	Q3MIN7	710 aa		13.69	□□□□□ -0.22
SCN5A-204	ENST00000414099	EIF4G1	Q04637	1599 aa	Known RBP	13.69	□□□□□ -0.22
SCN5A-204	ENST00000414099	CCNB3	Q8WWL7	1395 aa		13.68	□□□□□ -0.22
SCN5A-204	ENST00000414099	CARD11	Q9BXL7	1154 aa		13.67	□□□□□ -0.22
SCN5A-204	ENST00000414099	CHMP4A	Q9BY43	222 aa		13.67	□□□□□ -0.22
SCN5A-204	ENST00000414099	PTMS	P20962	102 aa		13.67	□□□□□ -0.22
SCN5A-204	ENST00000414099	SMARCA2	P51531	1590 aa		13.66	□□□□□ -0.22
SCN5A-204	ENST00000414099	OS9	Q13438	667 aa	Predicted RBP	13.66	□□□□□ -0.22
SCN5A-204	ENST00000414099	CARMIL2	Q6F5E8	1435 aa		13.66	□□□□□ -0.22
SCN5A-204	ENST00000414099	CEP162	Q5TB80	1403 aa		13.64	□□□□□ -0.23
SCN5A-204	ENST00000414099	TMX4	Q9H1E5	349 aa	Predicted RBP	13.64	□□□□□ -0.23
SCN5A-204	ENST00000414099	FGD1	P98174	961 aa		13.64	□□□□□ -0.23
SCN5A-204	ENST00000414099	MCC	P23508	829 aa		13.63	□□□□□ -0.23
SCN5A-204	ENST00000414099	NAP1L5	Q96NT1	182 aa	Predicted RBP	13.62	□□□□□ -0.23
SCN5A-204	ENST00000414099	HSP90AB1	P08238	724 aa	Known RBP	13.62	□□□□□ -0.23
SCN5A-204	ENST00000414099	KIAA2012	Q0VF49	1180 aa		13.62	□□□□□ -0.23
SCN5A-204	ENST00000414099	LAS1L	Q9Y4W2	734 aa	Known RBP	13.62	□□□□□ -0.23
SCN5A-204	ENST00000414099	TMF1	P82094	1093 aa		13.6	□□□□□ -0.23
SCN5A-204	ENST00000414099	KCNJ4	P48050	445 aa		13.6	□□□□□ -0.23
SCN5A-204	ENST00000414099	USP35	Q9P2H5	1018 aa		13.59	□□□□□ -0.23
SCN5A-204	ENST00000414099	GOLGA6L4	A6NEF3	574 aa		13.59	□□□□□ -0.23
SCN5A-204	ENST00000414099	PDS5B	Q9NTI5	1447 aa		13.59	□□□□□ -0.23
SCN5A-204	ENST00000414099	SENP3	Q9H4L4	574 aa	Predicted RBP	13.58	□□□□□ -0.23
SCN5A-204	ENST00000414099	CALD1	Q05682	793 aa	Known RBP	13.58	□□□□□ -0.24
SCN5A-204	ENST00000414099	RTF1	Q92541	710 aa	Known RBP	13.57	□□□□□ -0.24
SCN5A-204	ENST00000414099	TULP1	O00294	542 aa	Predicted RBP	13.57	□□□□□ -0.24
SCN5A-204	ENST00000414099	MSN	P26038	577 aa	Known RBP	13.57	□□□□□ -0.24
SCN5A-204	ENST00000414099	TNIK	Q9UKE5	1360 aa		13.56	□□□□□ -0.24
SCN5A-204	ENST00000414099	HSCB	Q8IWL3	235 aa		13.56	□□□□□ -0.24
SCN5A-204	ENST00000414099	SRPK2	P78362	688 aa	Known RBP	13.54	□□□□□ -0.24
SCN5A-204	ENST00000414099	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.54	□□□□□ -0.24
SCN5A-204	ENST00000414099	ARHGAP35	Q9NRY4	1499 aa		13.53	□□□□□ -0.24
SCN5A-204	ENST00000414099	U2SURP	O15042	1029 aa	Known RBP	13.53	□□□□□ -0.24
SCN5A-204	ENST00000414099	HDAC5	Q9UQL6	1122 aa		13.53	□□□□□ -0.24
SCN5A-204	ENST00000414099	EIF3A	Q14152	1382 aa	Known RBP	13.53	□□□□□ -0.24
SCN5A-204	ENST00000414099	HTATSF1	O43719	755 aa	Known RBP	13.53	□□□□□ -0.24
SCN5A-204	ENST00000414099	PLCB2	Q00722	1185 aa		13.52	□□□□□ -0.24
SCN5A-204	ENST00000414099	PPP4R2	Q9NY27	417 aa		13.51	□□□□□ -0.25
SCN5A-204	ENST00000414099	CUX2	O14529	1486 aa		13.5	□□□□□ -0.25
SCN5A-204	ENST00000414099	DRC7	Q8IY82	874 aa		13.5	□□□□□ -0.25
SCN5A-204	ENST00000414099	NOP58	Q9Y2X3	529 aa	Known RBP	13.49	□□□□□ -0.25
SCN5A-204	ENST00000414099	CARMIL1	Q5VZK9	1371 aa		13.49	□□□□□ -0.25
SCN5A-204	ENST00000414099	TPM4	P67936	248 aa		13.49	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 39 ms