RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 STAG3Q9UJ98 1225 aa17.42■□□□□ 0.38
CCDC88A-204ENST00000413716 KIAA2012Q0VF49 1180 aa17.41■□□□□ 0.38
CCDC88A-204ENST00000413716 PPM1GO15355 546 aaPredicted RBP17.4■□□□□ 0.38
CCDC88A-204ENST00000413716 CLSTN1O94985 981 aa17.39■□□□□ 0.37
CCDC88A-204ENST00000413716 A0A0G2JS52 829 aa17.37■□□□□ 0.37
CCDC88A-204ENST00000413716 DRC7Q8IY82 874 aa17.35■□□□□ 0.37
CCDC88A-204ENST00000413716 PNNQ9H307 717 aaKnown RBP17.33■□□□□ 0.37
CCDC88A-204ENST00000413716 GOLGA6L1Q8N7Z2 621 aa17.32■□□□□ 0.36
CCDC88A-204ENST00000413716 SCAF1Q9H7N4 1312 aaKnown RBP17.32■□□□□ 0.36
CCDC88A-204ENST00000413716 SETQ01105 290 aaPredicted RBP17.31■□□□□ 0.36
CCDC88A-204ENST00000413716 PRM3Q9NNZ6 103 aa17.29■□□□□ 0.36
CCDC88A-204ENST00000413716 USP35Q9P2H5 1018 aa17.28■□□□□ 0.36
CCDC88A-204ENST00000413716 A0A0U1RQG5 324 aaPredicted RBP17.27■□□□□ 0.36
CCDC88A-204ENST00000413716 GOLGA6L4A6NEF3 574 aa17.27■□□□□ 0.36
CCDC88A-204ENST00000413716 HSP90AB1P08238 724 aaKnown RBP17.27■□□□□ 0.36
CCDC88A-204ENST00000413716 FGD1P98174 961 aa17.26■□□□□ 0.35
CCDC88A-204ENST00000413716 FTSJ3Q8IY81 847 aaKnown RBP17.25■□□□□ 0.35
CCDC88A-204ENST00000413716 CHGAP10645 457 aaKnown RBP17.23■□□□□ 0.35
CCDC88A-204ENST00000413716 MRS2Q9HD23 443 aa17.22■□□□□ 0.35
CCDC88A-204ENST00000413716 IRX6P78412 446 aaPredicted RBP17.22■□□□□ 0.35
CCDC88A-204ENST00000413716 TAOK2Q9UL54 1235 aa17.22■□□□□ 0.35
CCDC88A-204ENST00000413716 ARID4BQ4LE39 1312 aaPredicted RBP17.21■□□□□ 0.35
CCDC88A-204ENST00000413716 LAS1LQ9Y4W2 734 aaKnown RBP17.21■□□□□ 0.35
CCDC88A-204ENST00000413716 NOP58Q9Y2X3 529 aaKnown RBP17.21■□□□□ 0.35
CCDC88A-204ENST00000413716 DDX10Q13206 875 aaKnown RBP17.19■□□□□ 0.34
CCDC88A-204ENST00000413716 ZNF777Q9ULD5 760 aaPredicted RBP17.19■□□□□ 0.34
CCDC88A-204ENST00000413716 NAP1L2Q9ULW6 460 aaPredicted RBP17.17■□□□□ 0.34
CCDC88A-204ENST00000413716 FBLN2P98095 1184 aa17.16■□□□□ 0.34
CCDC88A-204ENST00000413716 KCNJ4P48050 445 aa17.15■□□□□ 0.34
CCDC88A-204ENST00000413716 ARID3AQ99856 593 aa17.15■□□□□ 0.34
CCDC88A-204ENST00000413716 HSCBQ8IWL3 235 aa17.14■□□□□ 0.33
CCDC88A-204ENST00000413716 GOLGA2Q08379 1002 aa17.12■□□□□ 0.33
CCDC88A-204ENST00000413716 PTMSP20962 102 aa17.12■□□□□ 0.33
CCDC88A-204ENST00000413716 GNL2Q13823 731 aaKnown RBP17.12■□□□□ 0.33
CCDC88A-204ENST00000413716 PLPPR3Q6T4P5 718 aa17.12■□□□□ 0.33
CCDC88A-204ENST00000413716 NPHP1O15259 732 aa17.11■□□□□ 0.33
CCDC88A-204ENST00000413716 CHMP4BQ9H444 224 aaKnown RBP17.09■□□□□ 0.33
CCDC88A-204ENST00000413716 ZBTB7CA1YPR0 619 aa17.08■□□□□ 0.32
CCDC88A-204ENST00000413716 MCCP23508 829 aa17.07■□□□□ 0.32
CCDC88A-204ENST00000413716 OS9Q13438 667 aaPredicted RBP17.07■□□□□ 0.32
CCDC88A-204ENST00000413716 C14orf37Q86TY3 774 aa17.06■□□□□ 0.32
CCDC88A-204ENST00000413716 TPM4P67936 248 aa17.04■□□□□ 0.32
CCDC88A-204ENST00000413716 ARID3CA6NKF2 412 aa17.03■□□□□ 0.32
CCDC88A-204ENST00000413716 DEKP35659 375 aaKnown RBP17.02■□□□□ 0.32
CCDC88A-204ENST00000413716 SYAP1Q96A49 352 aaPredicted RBP17.01■□□□□ 0.31
CCDC88A-204ENST00000413716 CFAP53Q96M91 514 aa17.01■□□□□ 0.31
CCDC88A-204ENST00000413716 ZBTB4Q9P1Z0 1013 aaPredicted RBP17■□□□□ 0.31
CCDC88A-204ENST00000413716 CFAP44Q96MT7 982 aa16.98■□□□□ 0.31
CCDC88A-204ENST00000413716 GBP4Q96PP9 640 aa16.96■□□□□ 0.31
CCDC88A-204ENST00000413716 RGS3P49796 1198 aa16.96■□□□□ 0.31
CCDC88A-204ENST00000413716 HTATSF1O43719 755 aaKnown RBP16.96■□□□□ 0.31
CCDC88A-204ENST00000413716 RRP12Q5JTH9 1297 aaKnown RBP16.95■□□□□ 0.3
CCDC88A-204ENST00000413716 MS4A1P11836 297 aa16.95■□□□□ 0.3
CCDC88A-204ENST00000413716 HAP1P54257 671 aaPredicted RBP16.94■□□□□ 0.3
CCDC88A-204ENST00000413716 ISY1Q9ULR0 285 aaKnown RBP16.94■□□□□ 0.3
CCDC88A-204ENST00000413716 CCDC34Q96HJ3 373 aa16.94■□□□□ 0.3
CCDC88A-204ENST00000413716 CEP89Q96ST8 783 aa16.94■□□□□ 0.3
CCDC88A-204ENST00000413716 PDE4CQ08493 712 aa16.93■□□□□ 0.3
CCDC88A-204ENST00000413716 HSP90AA2PQ14568 343 aaPredicted RBP16.93■□□□□ 0.3
CCDC88A-204ENST00000413716 PATL2C9JE40 543 aaKnown RBP16.93■□□□□ 0.3
CCDC88A-204ENST00000413716 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.9■□□□□ 0.39e-7■■■□□ 15.8
CCDC88A-204ENST00000413716 PLEKHG5O94827 1062 aa16.9■□□□□ 0.3
CCDC88A-204ENST00000413716 P3H3Q8IVL6 736 aa16.89■□□□□ 0.29
CCDC88A-204ENST00000413716 KDM2AQ9Y2K7 1162 aa16.89■□□□□ 0.29
CCDC88A-204ENST00000413716 TPM3P06753 285 aa16.89■□□□□ 0.29
CCDC88A-204ENST00000413716 MAPK8IP3Q9UPT6 1336 aa16.89■□□□□ 0.29
CCDC88A-204ENST00000413716 GPS2Q13227 327 aa16.88■□□□□ 0.29
CCDC88A-204ENST00000413716 PHF14O94880 888 aa16.87■□□□□ 0.29
CCDC88A-204ENST00000413716 CCDC70Q6NSX1 233 aa16.86■□□□□ 0.29
CCDC88A-204ENST00000413716 SPRYD3Q8NCJ5 442 aa16.86■□□□□ 0.29
CCDC88A-204ENST00000413716 PPP4R2Q9NY27 417 aa16.85■□□□□ 0.29
CCDC88A-204ENST00000413716 KNSTRNQ9Y448 316 aa16.85■□□□□ 0.29
CCDC88A-204ENST00000413716 KIAA1211Q6ZU35 1233 aa16.85■□□□□ 0.29
CCDC88A-204ENST00000413716 PPP1R15AO75807 674 aaPredicted RBP16.83■□□□□ 0.29
CCDC88A-204ENST00000413716 CSPP1Q1MSJ5 1256 aa16.83■□□□□ 0.28
CCDC88A-204ENST00000413716 APPP05067 770 aa16.83■□□□□ 0.28
CCDC88A-204ENST00000413716 EIF4G2P78344 907 aaKnown RBP eCLIP16.83■□□□□ 0.28
CCDC88A-204ENST00000413716 SUPT16HQ9Y5B9 1047 aaKnown RBP16.82■□□□□ 0.28
CCDC88A-204ENST00000413716 RSPH6AQ9H0K4 717 aa16.82■□□□□ 0.28
CCDC88A-204ENST00000413716 CDCA8Q53HL2 280 aa16.82■□□□□ 0.28
CCDC88A-204ENST00000413716 ZNF771Q7L3S4 317 aaPredicted RBP16.82■□□□□ 0.28
CCDC88A-204ENST00000413716 NOM1Q5C9Z4 860 aaKnown RBP16.81■□□□□ 0.28
CCDC88A-204ENST00000413716 FRAT1Q92837 279 aaPredicted RBP16.81■□□□□ 0.28
CCDC88A-204ENST00000413716 GZF1Q9H116 711 aaPredicted RBP16.8■□□□□ 0.28
CCDC88A-204ENST00000413716 GOLGA6L3A6NEY3 463 aa16.8■□□□□ 0.28
CCDC88A-204ENST00000413716 KRI1Q8N9T8 703 aaKnown RBP16.8■□□□□ 0.28
CCDC88A-204ENST00000413716 TEX35Q5T0J7 233 aa16.8■□□□□ 0.28
CCDC88A-204ENST00000413716 MIER1Q8N108 512 aa16.79■□□□□ 0.28
CCDC88A-204ENST00000413716 FBXO3Q9UK99 471 aa16.79■□□□□ 0.28
CCDC88A-204ENST00000413716 TSR1Q2NL82 804 aaKnown RBP16.76■□□□□ 0.27
CCDC88A-204ENST00000413716 HSP90B1P14625 803 aaKnown RBP16.76■□□□□ 0.27
CCDC88A-204ENST00000413716 TAF7LQ5H9L4 462 aa16.76■□□□□ 0.27
CCDC88A-204ENST00000413716 HMMRO75330 724 aa16.76■□□□□ 0.27
CCDC88A-204ENST00000413716 NPM1P06748 294 aaKnown RBP eCLIP16.76■□□□□ 0.27
CCDC88A-204ENST00000413716 CALD1Q05682 793 aaKnown RBP16.76■□□□□ 0.27
CCDC88A-204ENST00000413716 NUDCQ9Y266 331 aa16.75■□□□□ 0.27
CCDC88A-204ENST00000413716 RASSF8Q8NHQ8 419 aa16.75■□□□□ 0.27
CCDC88A-204ENST00000413716 CREBRFQ8IUR6 639 aa16.74■□□□□ 0.27
CCDC88A-204ENST00000413716 MAP7D2Q96T17 732 aa16.71■□□□□ 0.27
CCDC88A-204ENST00000413716 CCAR2Q8N163 923 aaKnown RBP16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms