RNA–Protein interactions for RNA: ENST00000399455.2

USP47-203, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP47, Length 7,396 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-203ENST00000399455 CFDP1Q9UEE9 299 aaPredicted RBP10.78□□□□□ -0.68
USP47-203ENST00000399455 GOLGA3Q08378 1498 aa10.78□□□□□ -0.68
USP47-203ENST00000399455 MYT1Q01538 1121 aa10.76□□□□□ -0.69
USP47-203ENST00000399455 PLEKHG5O94827 1062 aa10.75□□□□□ -0.69
USP47-203ENST00000399455 CEP164Q9UPV0 1460 aa10.75□□□□□ -0.69
USP47-203ENST00000399455 KDM2AQ9Y2K7 1162 aa10.73□□□□□ -0.69
USP47-203ENST00000399455 DIEXFQ68CQ4 756 aaKnown RBP10.72□□□□□ -0.69
USP47-203ENST00000399455 WDR43Q15061 677 aaKnown RBP eCLIP10.72□□□□□ -0.696e-6■■■□□ 14.9
USP47-203ENST00000399455 MLECQ14165 292 aa10.71□□□□□ -0.69
USP47-203ENST00000399455 CDCA8Q53HL2 280 aa10.71□□□□□ -0.7
USP47-203ENST00000399455 NPHP1O15259 732 aa10.7□□□□□ -0.7
USP47-203ENST00000399455 CCNB3Q8WWL7 1395 aa10.7□□□□□ -0.7
USP47-203ENST00000399455 CUX2O14529 1486 aa10.7□□□□□ -0.7
USP47-203ENST00000399455 LMOD2Q6P5Q4 547 aa10.7□□□□□ -0.7
USP47-203ENST00000399455 POGKQ9P215 609 aa10.7□□□□□ -0.7
USP47-203ENST00000399455 SENP3Q9H4L4 574 aaPredicted RBP10.68□□□□□ -0.7
USP47-203ENST00000399455 FHAD1B1AJZ9 1412 aa10.67□□□□□ -0.7
USP47-203ENST00000399455 SOGA1O94964 1423 aa10.67□□□□□ -0.7
USP47-203ENST00000399455 TMC1Q8TDI8 760 aa10.67□□□□□ -0.7
USP47-203ENST00000399455 RTL5Q5HYW3 569 aaPredicted RBP10.66□□□□□ -0.7
USP47-203ENST00000399455 RRP7BPQ9NSQ0 103 aa10.65□□□□□ -0.7
USP47-203ENST00000399455 CFAP53Q96M91 514 aa10.65□□□□□ -0.7
USP47-203ENST00000399455 MYH16Q9H6N6 1097 aa10.65□□□□□ -0.71
USP47-203ENST00000399455 ABCC8Q09428 1581 aa10.64□□□□□ -0.71
USP47-203ENST00000399455 CARMIL1Q5VZK9 1371 aa10.64□□□□□ -0.71
USP47-203ENST00000399455 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.64□□□□□ -0.71
USP47-203ENST00000399455 OSCARQ8IYS5 282 aa10.63□□□□□ -0.71
USP47-203ENST00000399455 ARXQ96QS3 562 aa10.63□□□□□ -0.71
USP47-203ENST00000399455 MYO15BQ96JP2 1530 aa10.63□□□□□ -0.71
USP47-203ENST00000399455 EIF4G2P78344 907 aaKnown RBP eCLIP10.61□□□□□ -0.712e-7■■■■□ 23
USP47-203ENST00000399455 EID1Q9Y6B2 187 aa10.6□□□□□ -0.71
USP47-203ENST00000399455 RGL3Q3MIN7 710 aa10.58□□□□□ -0.72
USP47-203ENST00000399455 CADPSQ9ULU8 1353 aa10.58□□□□□ -0.72
USP47-203ENST00000399455 EFCAB2Q5VUJ9 269 aa10.57□□□□□ -0.72
USP47-203ENST00000399455 UPF2Q9HAU5 1272 aaKnown RBP10.57□□□□□ -0.72
USP47-203ENST00000399455 TOP2AP11388 1531 aaKnown RBP10.56□□□□□ -0.72
USP47-203ENST00000399455 PNNQ9H307 717 aaKnown RBP10.56□□□□□ -0.72
USP47-203ENST00000399455 GGT6Q6P531 493 aa10.54□□□□□ -0.72
USP47-203ENST00000399455 NUDCQ9Y266 331 aa10.54□□□□□ -0.72
USP47-203ENST00000399455 KNSTRNQ9Y448 316 aa10.54□□□□□ -0.72
USP47-203ENST00000399455 TMX4Q9H1E5 349 aaPredicted RBP10.54□□□□□ -0.72
USP47-203ENST00000399455 HSP90AA1P07900 732 aaKnown RBP10.53□□□□□ -0.72
USP47-203ENST00000399455 PPM1GO15355 546 aaPredicted RBP10.53□□□□□ -0.72
USP47-203ENST00000399455 CCDC9Q9Y3X0 531 aaKnown RBP10.53□□□□□ -0.72
USP47-203ENST00000399455 CEP162Q5TB80 1403 aa10.52□□□□□ -0.72
USP47-203ENST00000399455 CCDC88BA6NC98 1476 aa10.52□□□□□ -0.73
USP47-203ENST00000399455 MAPK8IP3Q9UPT6 1336 aa10.51□□□□□ -0.73
USP47-203ENST00000399455 FANCD2Q9BXW9 1451 aa10.51□□□□□ -0.73
USP47-203ENST00000399455 SMARCA4P51532 1647 aa10.51□□□□□ -0.73
USP47-203ENST00000399455 FMN1Q68DA7 1419 aa10.5□□□□□ -0.73
USP47-203ENST00000399455 CDK11BP21127 795 aaKnown RBP10.5□□□□□ -0.73
USP47-203ENST00000399455 CYB5RLQ6IPT4 315 aa10.5□□□□□ -0.73
USP47-203ENST00000399455 TDRD9Q8NDG6 1382 aaKnown RBP10.5□□□□□ -0.73
USP47-203ENST00000399455 MEX3CQ5U5Q3 659 aaKnown RBP10.5□□□□□ -0.73
USP47-203ENST00000399455 TNIKQ9UKE5 1360 aa10.49□□□□□ -0.73
USP47-203ENST00000399455 ARHGAP35Q9NRY4 1499 aa10.48□□□□□ -0.73
USP47-203ENST00000399455 CARD11Q9BXL7 1154 aa10.48□□□□□ -0.73
USP47-203ENST00000399455 GOLGA2Q08379 1002 aa10.48□□□□□ -0.73
USP47-203ENST00000399455 FAM9BQ8IZU0 186 aa10.47□□□□□ -0.73
USP47-203ENST00000399455 CSB-PGBD3P0DP91 1061 aa10.47□□□□□ -0.73
USP47-203ENST00000399455 MROH2BQ7Z745 1585 aa10.47□□□□□ -0.73
USP47-203ENST00000399455 SRPK2P78362 688 aaKnown RBP10.47□□□□□ -0.73
USP47-203ENST00000399455 HDGFL2Q7Z4V5 671 aaPredicted RBP10.46□□□□□ -0.74
USP47-203ENST00000399455 ATAD2BQ9ULI0 1458 aa10.46□□□□□ -0.74
USP47-203ENST00000399455 DCAF8L1A6NGE4 600 aa10.46□□□□□ -0.74
USP47-203ENST00000399455 EIF5BO60841 1220 aaKnown RBP10.46□□□□□ -0.74
USP47-203ENST00000399455 PAK3O75914 559 aaPredicted RBP10.45□□□□□ -0.74
USP47-203ENST00000399455 RSPH4AQ5TD94 716 aa10.45□□□□□ -0.74
USP47-203ENST00000399455 CCDC18Q5T9S5 1454 aa10.45□□□□□ -0.74
USP47-203ENST00000399455 FOXD1Q16676 465 aa10.44□□□□□ -0.74
USP47-203ENST00000399455 WIZO95785 1651 aa10.44□□□□□ -0.74
USP47-203ENST00000399455 SALL2Q9Y467 1007 aaPredicted RBP10.44□□□□□ -0.74
USP47-203ENST00000399455 SPAG9O60271 1321 aaKnown RBP10.43□□□□□ -0.74
USP47-203ENST00000399455 ANP32BQ92688 251 aaKnown RBP10.43□□□□□ -0.74
USP47-203ENST00000399455 ANP32AP39687 249 aaKnown RBP10.43□□□□□ -0.74
USP47-203ENST00000399455 ANKRD30AQ9BXX3 1397 aa10.43□□□□□ -0.74
USP47-203ENST00000399455 WASHC2CQ9Y4E1 1318 aa10.43□□□□□ -0.74
USP47-203ENST00000399455 CASC1Q6TDU7 716 aa10.42□□□□□ -0.74
USP47-203ENST00000399455 JPH4Q96JJ6 628 aa10.42□□□□□ -0.74
USP47-203ENST00000399455 EIF3AQ14152 1382 aaKnown RBP10.42□□□□□ -0.74
USP47-203ENST00000399455 TMF1P82094 1093 aa10.42□□□□□ -0.74
USP47-203ENST00000399455 CHMP4BQ9H444 224 aaKnown RBP10.42□□□□□ -0.74
USP47-203ENST00000399455 RAPGEF2Q9Y4G8 1499 aa10.42□□□□□ -0.74
USP47-203ENST00000399455 PTPRGP23470 1445 aa10.41□□□□□ -0.74
USP47-203ENST00000399455 HNRNPUQ00839 825 aaKnown RBP eCLIP10.41□□□□□ -0.74
USP47-203ENST00000399455 MRS2Q9HD23 443 aa10.41□□□□□ -0.74
USP47-203ENST00000399455 FAM69CQ0P6D2 419 aa10.4□□□□□ -0.75
USP47-203ENST00000399455 DDX10Q13206 875 aaKnown RBP10.4□□□□□ -0.75
USP47-203ENST00000399455 LAS1LQ9Y4W2 734 aaKnown RBP10.4□□□□□ -0.75
USP47-203ENST00000399455 RTF1Q92541 710 aaKnown RBP10.4□□□□□ -0.75
USP47-203ENST00000399455 STK26Q9P289 416 aa10.39□□□□□ -0.75
USP47-203ENST00000399455 KIF3BO15066 747 aa10.38□□□□□ -0.75
USP47-203ENST00000399455 CHMP4AQ9BY43 222 aa10.37□□□□□ -0.75
USP47-203ENST00000399455 OS9Q13438 667 aaPredicted RBP10.37□□□□□ -0.75
USP47-203ENST00000399455 FTSJ3Q8IY81 847 aaKnown RBP10.36□□□□□ -0.75
USP47-203ENST00000399455 SOX12O15370 315 aa10.36□□□□□ -0.75
USP47-203ENST00000399455 MRC2Q9UBG0 1479 aa10.36□□□□□ -0.75
USP47-203ENST00000399455 DCAF11Q8TEB1 546 aa10.36□□□□□ -0.75
USP47-203ENST00000399455 PRDM2Q13029 1718 aa10.36□□□□□ -0.75
USP47-203ENST00000399455 UACAQ9BZF9 1416 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms