RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 MIER1Q8N108 512 aa18.3■□□□□ 0.52
COL4A3-202ENST00000396578 ABCC9O60706 1549 aa18.28■□□□□ 0.52
COL4A3-202ENST00000396578 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.27■□□□□ 0.52
COL4A3-202ENST00000396578 KDM2AQ9Y2K7 1162 aa18.27■□□□□ 0.51
COL4A3-202ENST00000396578 GOLGA6L6A8MZA4 724 aa18.26■□□□□ 0.51
COL4A3-202ENST00000396578 PLPPR3Q6T4P5 718 aa18.25■□□□□ 0.51
COL4A3-202ENST00000396578 EIF4G2P78344 907 aaKnown RBP eCLIP18.22■□□□□ 0.51
COL4A3-202ENST00000396578 RTN4Q9NQC3 1192 aaKnown RBP18.21■□□□□ 0.51
COL4A3-202ENST00000396578 TPRNQ4KMQ1 711 aa18.21■□□□□ 0.51
COL4A3-202ENST00000396578 CHIC2Q9UKJ5 165 aa18.21■□□□□ 0.51
COL4A3-202ENST00000396578 FTSJ3Q8IY81 847 aaKnown RBP18.21■□□□□ 0.5
COL4A3-202ENST00000396578 A0A0G2JS52 829 aa18.18■□□□□ 0.5
COL4A3-202ENST00000396578 CHAF1AQ13111 956 aaPredicted RBP18.18■□□□□ 0.5
COL4A3-202ENST00000396578 NOP58Q9Y2X3 529 aaKnown RBP18.17■□□□□ 0.5
COL4A3-202ENST00000396578 NRDCO43847 1150 aa18.17■□□□□ 0.5
COL4A3-202ENST00000396578 PLCB2Q00722 1185 aa18.16■□□□□ 0.5
COL4A3-202ENST00000396578 LAS1LQ9Y4W2 734 aaKnown RBP18.15■□□□□ 0.5
COL4A3-202ENST00000396578 HIRIP3Q9BW71 556 aaPredicted RBP18.14■□□□□ 0.49
COL4A3-202ENST00000396578 NPM1P06748 294 aaKnown RBP eCLIP18.13■□□□□ 0.49
COL4A3-202ENST00000396578 TSPY4P0CV99 314 aa18.13■□□□□ 0.49
COL4A3-202ENST00000396578 TSPY10P0CW01 314 aa18.13■□□□□ 0.49
COL4A3-202ENST00000396578 TULP1O00294 542 aaPredicted RBP18.12■□□□□ 0.49
COL4A3-202ENST00000396578 HSP90AB1P08238 724 aaKnown RBP18.12■□□□□ 0.49
COL4A3-202ENST00000396578 SUPT16HQ9Y5B9 1047 aaKnown RBP18.12■□□□□ 0.49
COL4A3-202ENST00000396578 CCDC180Q9P1Z9 1646 aa18.11■□□□□ 0.49
COL4A3-202ENST00000396578 CFAP53Q96M91 514 aa18.11■□□□□ 0.49
COL4A3-202ENST00000396578 MTUS2Q5JR59 1369 aa18.1■□□□□ 0.49
COL4A3-202ENST00000396578 MSNP26038 577 aaKnown RBP18.1■□□□□ 0.49
COL4A3-202ENST00000396578 ZBTB7CA1YPR0 619 aa18.09■□□□□ 0.49
COL4A3-202ENST00000396578 C14orf37Q86TY3 774 aa18.07■□□□□ 0.48
COL4A3-202ENST00000396578 SCRIBQ14160 1630 aa18.06■□□□□ 0.48
COL4A3-202ENST00000396578 L1TD1Q5T7N2 865 aaKnown RBP18.05■□□□□ 0.48
COL4A3-202ENST00000396578 PPP4R2Q9NY27 417 aa18.05■□□□□ 0.48
COL4A3-202ENST00000396578 KNSTRNQ9Y448 316 aa18.04■□□□□ 0.48
COL4A3-202ENST00000396578 CDCA8Q53HL2 280 aa18.03■□□□□ 0.48
COL4A3-202ENST00000396578 CHMP4BQ9H444 224 aaKnown RBP18.03■□□□□ 0.48
COL4A3-202ENST00000396578 FGD1P98174 961 aa18.01■□□□□ 0.47
COL4A3-202ENST00000396578 RGS3P49796 1198 aa18.01■□□□□ 0.47
COL4A3-202ENST00000396578 HSCBQ8IWL3 235 aa17.99■□□□□ 0.47
COL4A3-202ENST00000396578 GOLGA6L4A6NEF3 574 aa17.99■□□□□ 0.47
COL4A3-202ENST00000396578 AMER1Q5JTC6 1135 aaPredicted RBP17.98■□□□□ 0.47
COL4A3-202ENST00000396578 DRC7Q8IY82 874 aa17.98■□□□□ 0.47
COL4A3-202ENST00000396578 PPP1R15AO75807 674 aaPredicted RBP17.97■□□□□ 0.47
COL4A3-202ENST00000396578 PLEKHG5O94827 1062 aa17.97■□□□□ 0.47
COL4A3-202ENST00000396578 TAOK2Q9UL54 1235 aa17.97■□□□□ 0.47
COL4A3-202ENST00000396578 MAPK8IP3Q9UPT6 1336 aa17.97■□□□□ 0.47
COL4A3-202ENST00000396578 MS4A1P11836 297 aa17.96■□□□□ 0.47
COL4A3-202ENST00000396578 KCNJ4P48050 445 aa17.96■□□□□ 0.47
COL4A3-202ENST00000396578 DEKP35659 375 aaKnown RBP17.94■□□□□ 0.46
COL4A3-202ENST00000396578 NAP1L2Q9ULW6 460 aaPredicted RBP17.94■□□□□ 0.46
COL4A3-202ENST00000396578 OS9Q13438 667 aaPredicted RBP17.93■□□□□ 0.46
COL4A3-202ENST00000396578 RRP7BPQ9NSQ0 103 aa17.93■□□□□ 0.46
COL4A3-202ENST00000396578 FRAT1Q92837 279 aaPredicted RBP17.92■□□□□ 0.46
COL4A3-202ENST00000396578 CLIP1P30622 1438 aa17.92■□□□□ 0.46
COL4A3-202ENST00000396578 SENP3-EIF4A1A0A087X0R7 540 aa17.91■□□□□ 0.46
COL4A3-202ENST00000396578 RSF1Q96T23 1441 aaPredicted RBP17.9■□□□□ 0.46
COL4A3-202ENST00000396578 MCCP23508 829 aa17.9■□□□□ 0.46
COL4A3-202ENST00000396578 NUDCQ9Y266 331 aa17.89■□□□□ 0.45
COL4A3-202ENST00000396578 NEUROD2Q15784 382 aa17.89■□□□□ 0.45
COL4A3-202ENST00000396578 SENP3Q9H4L4 574 aaPredicted RBP17.88■□□□□ 0.45
COL4A3-202ENST00000396578 PTMSP20962 102 aa17.88■□□□□ 0.45
COL4A3-202ENST00000396578 HAP1P54257 671 aaPredicted RBP17.87■□□□□ 0.45
COL4A3-202ENST00000396578 CFAP44Q96MT7 982 aa17.87■□□□□ 0.45
COL4A3-202ENST00000396578 PNNQ9H307 717 aaKnown RBP17.86■□□□□ 0.45
COL4A3-202ENST00000396578 RGL3Q3MIN7 710 aa17.86■□□□□ 0.45
COL4A3-202ENST00000396578 B4GALNT3Q6L9W6 998 aa17.86■□□□□ 0.45
COL4A3-202ENST00000396578 GOLGA2Q08379 1002 aa17.85■□□□□ 0.45
COL4A3-202ENST00000396578 CARD11Q9BXL7 1154 aa17.85■□□□□ 0.45
COL4A3-202ENST00000396578 ARID4BQ4LE39 1312 aaPredicted RBP17.85■□□□□ 0.45
COL4A3-202ENST00000396578 KIAA2012Q0VF49 1180 aa17.84■□□□□ 0.45
COL4A3-202ENST00000396578 NPHP1O15259 732 aa17.83■□□□□ 0.44
COL4A3-202ENST00000396578 ZCCHC6Q5VYS8 1495 aaKnown RBP17.81■□□□□ 0.44
COL4A3-202ENST00000396578 TNNT3P45378 269 aaPredicted RBP17.81■□□□□ 0.44
COL4A3-202ENST00000396578 CLSTN1O94985 981 aa17.8■□□□□ 0.44
COL4A3-202ENST00000396578 SPRYD3Q8NCJ5 442 aa17.8■□□□□ 0.44
COL4A3-202ENST00000396578 NOC3LQ8WTT2 800 aaKnown RBP17.8■□□□□ 0.44
COL4A3-202ENST00000396578 GBP4Q96PP9 640 aa17.79■□□□□ 0.44
COL4A3-202ENST00000396578 GNL2Q13823 731 aaKnown RBP17.78■□□□□ 0.44
COL4A3-202ENST00000396578 GOLGA3Q08378 1498 aa17.78■□□□□ 0.44
COL4A3-202ENST00000396578 CC2D1BQ5T0F9 858 aaKnown RBP17.75■□□□□ 0.43
COL4A3-202ENST00000396578 NCBP3Q53F19 620 aaKnown RBP17.74■□□□□ 0.43
COL4A3-202ENST00000396578 SYAP1Q96A49 352 aaPredicted RBP17.74■□□□□ 0.43
COL4A3-202ENST00000396578 CHMP7Q8WUX9 453 aaPredicted RBP17.74■□□□□ 0.43
COL4A3-202ENST00000396578 U2SURPO15042 1029 aaKnown RBP17.73■□□□□ 0.43
COL4A3-202ENST00000396578 ARID3AQ99856 593 aa17.73■□□□□ 0.43
COL4A3-202ENST00000396578 CEP162Q5TB80 1403 aa17.72■□□□□ 0.43
COL4A3-202ENST00000396578 GOLGA6L1Q8N7Z2 621 aa17.72■□□□□ 0.43
COL4A3-202ENST00000396578 RBM19Q9Y4C8 960 aaKnown RBP17.72■□□□□ 0.43
COL4A3-202ENST00000396578 KIAA1211Q6ZU35 1233 aa17.7■□□□□ 0.42
COL4A3-202ENST00000396578 POGKQ9P215 609 aa17.7■□□□□ 0.42
COL4A3-202ENST00000396578 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.69■□□□□ 0.42
COL4A3-202ENST00000396578 HTATSF1O43719 755 aaKnown RBP17.69■□□□□ 0.42
COL4A3-202ENST00000396578 TPM4P67936 248 aa17.69■□□□□ 0.42
COL4A3-202ENST00000396578 GZF1Q9H116 711 aaPredicted RBP17.68■□□□□ 0.42
COL4A3-202ENST00000396578 PLEKHD1A6NEE1 506 aa17.67■□□□□ 0.42
COL4A3-202ENST00000396578 EEA1Q15075 1411 aa17.67■□□□□ 0.42
COL4A3-202ENST00000396578 KCNH8Q96L42 1107 aa17.67■□□□□ 0.42
COL4A3-202ENST00000396578 USP35Q9P2H5 1018 aa17.66■□□□□ 0.42
COL4A3-202ENST00000396578 A0A0U1RQG5 324 aaPredicted RBP17.64■□□□□ 0.41
COL4A3-202ENST00000396578 TMF1P82094 1093 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms