RNA–Protein interactions for RNA: ENST00000377298.8

CLSTN1-202, Transcript of calsyntenin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN1, Length 5,221 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-202ENST00000377298 CUX2O14529 1486 aa24.2■■□□□ 1.46
CLSTN1-202ENST00000377298 TMC1Q8TDI8 760 aa24.19■■□□□ 1.46
CLSTN1-202ENST00000377298 HNRNPUQ00839 825 aaKnown RBP eCLIP24.19■■□□□ 1.46
CLSTN1-202ENST00000377298 FAM9BQ8IZU0 186 aa24.18■■□□□ 1.46
CLSTN1-202ENST00000377298 EIF4G2P78344 907 aaKnown RBP eCLIP24.17■■□□□ 1.46
CLSTN1-202ENST00000377298 FHAD1B1AJZ9 1412 aa24.15■■□□□ 1.46
CLSTN1-202ENST00000377298 CCDC88BA6NC98 1476 aa24.15■■□□□ 1.46
CLSTN1-202ENST00000377298 PDS5BQ9NTI5 1447 aa24.14■■□□□ 1.45
CLSTN1-202ENST00000377298 PPP1R15AO75807 674 aaPredicted RBP24.11■■□□□ 1.45
CLSTN1-202ENST00000377298 WDR43Q15061 677 aaKnown RBP eCLIP24.09■■□□□ 1.45
CLSTN1-202ENST00000377298 SCAF1Q9H7N4 1312 aaKnown RBP24.08■■□□□ 1.45
CLSTN1-202ENST00000377298 SOGA1O94964 1423 aa24.06■■□□□ 1.44
CLSTN1-202ENST00000377298 MRS2Q9HD23 443 aa24.05■■□□□ 1.44
CLSTN1-202ENST00000377298 RGL3Q3MIN7 710 aa24.03■■□□□ 1.44
CLSTN1-202ENST00000377298 CCNB3Q8WWL7 1395 aa24.03■■□□□ 1.44
CLSTN1-202ENST00000377298 EIF4G1Q04637 1599 aaKnown RBP24.02■■□□□ 1.44
CLSTN1-202ENST00000377298 ARID4BQ4LE39 1312 aaPredicted RBP24.01■■□□□ 1.43
CLSTN1-202ENST00000377298 SALL2Q9Y467 1007 aaPredicted RBP24.01■■□□□ 1.43
CLSTN1-202ENST00000377298 FKBP8Q14318 412 aa23.98■■□□□ 1.43
CLSTN1-202ENST00000377298 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.98■■□□□ 1.43
CLSTN1-202ENST00000377298 ANP32AP39687 249 aaKnown RBP23.96■■□□□ 1.43
CLSTN1-202ENST00000377298 HIRIP3Q9BW71 556 aaPredicted RBP23.96■■□□□ 1.43
CLSTN1-202ENST00000377298 CDCA8Q53HL2 280 aa23.95■■□□□ 1.43
CLSTN1-202ENST00000377298 TOP2AP11388 1531 aaKnown RBP23.93■■□□□ 1.42
CLSTN1-202ENST00000377298 CARMIL2Q6F5E8 1435 aa23.9■■□□□ 1.42
CLSTN1-202ENST00000377298 CADPSQ9ULU8 1353 aa23.9■■□□□ 1.42
CLSTN1-202ENST00000377298 ABCC8Q09428 1581 aa23.87■■□□□ 1.41
CLSTN1-202ENST00000377298 C14orf37Q86TY3 774 aa23.87■■□□□ 1.41
CLSTN1-202ENST00000377298 TDRD9Q8NDG6 1382 aaKnown RBP23.86■■□□□ 1.41
CLSTN1-202ENST00000377298 CARD11Q9BXL7 1154 aa23.86■■□□□ 1.41
CLSTN1-202ENST00000377298 SENP3Q9H4L4 574 aaPredicted RBP23.86■■□□□ 1.41
CLSTN1-202ENST00000377298 VPS8Q8N3P4 1428 aa23.82■■□□□ 1.4
CLSTN1-202ENST00000377298 A0A0G2JS52 829 aa23.82■■□□□ 1.4
CLSTN1-202ENST00000377298 MIER1Q8N108 512 aa23.82■■□□□ 1.4
CLSTN1-202ENST00000377298 UPF2Q9HAU5 1272 aaKnown RBP23.82■■□□□ 1.4
CLSTN1-202ENST00000377298 ATAD2BQ9ULI0 1458 aa23.8■■□□□ 1.4
CLSTN1-202ENST00000377298 WIZO95785 1651 aa23.79■■□□□ 1.4
CLSTN1-202ENST00000377298 NPM2Q86SE8 214 aaKnown RBP23.79■■□□□ 1.4
CLSTN1-202ENST00000377298 CCDC136Q96JN2 1154 aa23.79■■□□□ 1.4
CLSTN1-202ENST00000377298 KNSTRNQ9Y448 316 aa23.78■■□□□ 1.4
CLSTN1-202ENST00000377298 KANK1Q14678 1352 aa23.78■■□□□ 1.4
CLSTN1-202ENST00000377298 CFAP53Q96M91 514 aa23.77■■□□□ 1.4
CLSTN1-202ENST00000377298 FMN1Q68DA7 1419 aa23.76■■□□□ 1.39
CLSTN1-202ENST00000377298 PLEKHG5O94827 1062 aa23.75■■□□□ 1.39
CLSTN1-202ENST00000377298 ZBTB7CA1YPR0 619 aa23.74■■□□□ 1.39
CLSTN1-202ENST00000377298 SIN3AQ96ST3 1273 aa23.74■■□□□ 1.39
CLSTN1-202ENST00000377298 ARHGAP35Q9NRY4 1499 aa23.73■■□□□ 1.39
CLSTN1-202ENST00000377298 POGKQ9P215 609 aa23.7■■□□□ 1.38
CLSTN1-202ENST00000377298 TIMELESSQ9UNS1 1208 aa23.7■■□□□ 1.38
CLSTN1-202ENST00000377298 HSP90AA1P07900 732 aaKnown RBP23.69■■□□□ 1.38
CLSTN1-202ENST00000377298 TRHP20396 242 aaPredicted RBP23.69■■□□□ 1.38
CLSTN1-202ENST00000377298 HAP1P54257 671 aaPredicted RBP23.68■■□□□ 1.38
CLSTN1-202ENST00000377298 SMARCA4P51532 1647 aa23.67■■□□□ 1.38
CLSTN1-202ENST00000377298 MYH16Q9H6N6 1097 aa23.64■■□□□ 1.38
CLSTN1-202ENST00000377298 HDGFP51858 240 aaKnown RBP23.64■■□□□ 1.38
CLSTN1-202ENST00000377298 RAPGEF2Q9Y4G8 1499 aa23.64■■□□□ 1.37
CLSTN1-202ENST00000377298 SETD5Q9C0A6 1442 aa23.63■■□□□ 1.37
CLSTN1-202ENST00000377298 EFCAB2Q5VUJ9 269 aa23.63■■□□□ 1.37
CLSTN1-202ENST00000377298 KANK4Q5T7N3 995 aaPredicted RBP23.62■■□□□ 1.37
CLSTN1-202ENST00000377298 DCAF11Q8TEB1 546 aa23.61■■□□□ 1.37
CLSTN1-202ENST00000377298 PPM1GO15355 546 aaPredicted RBP23.57■■□□□ 1.36
CLSTN1-202ENST00000377298 NUDCQ9Y266 331 aa23.56■■□□□ 1.36
CLSTN1-202ENST00000377298 MLECQ14165 292 aa23.55■■□□□ 1.36
CLSTN1-202ENST00000377298 TMF1P82094 1093 aa23.55■■□□□ 1.36
CLSTN1-202ENST00000377298 GGT6Q6P531 493 aa23.54■■□□□ 1.36
CLSTN1-202ENST00000377298 FANCD2Q9BXW9 1451 aa23.53■■□□□ 1.36
CLSTN1-202ENST00000377298 PKD2Q13563 968 aa23.52■■□□□ 1.36
CLSTN1-202ENST00000377298 ANKRD30AQ9BXX3 1397 aa23.5■■□□□ 1.35
CLSTN1-202ENST00000377298 MAPK8IP3Q9UPT6 1336 aa23.5■■□□□ 1.35
CLSTN1-202ENST00000377298 JPH4Q96JJ6 628 aa23.5■■□□□ 1.35
CLSTN1-202ENST00000377298 IRX6P78412 446 aaPredicted RBP23.48■■□□□ 1.35
CLSTN1-202ENST00000377298 FHOD3Q2V2M9 1422 aa23.46■■□□□ 1.35
CLSTN1-202ENST00000377298 RSPH4AQ5TD94 716 aa23.46■■□□□ 1.35
CLSTN1-202ENST00000377298 LMOD2Q6P5Q4 547 aa23.44■■□□□ 1.34
CLSTN1-202ENST00000377298 ANP32BQ92688 251 aaKnown RBP23.43■■□□□ 1.34
CLSTN1-202ENST00000377298 NUP155O75694 1391 aa23.42■■□□□ 1.34
CLSTN1-202ENST00000377298 CCDC18Q5T9S5 1454 aa23.42■■□□□ 1.34
CLSTN1-202ENST00000377298 MPHOSPH9Q99550 1183 aa23.4■■□□□ 1.34
CLSTN1-202ENST00000377298 CC2D1BQ5T0F9 858 aaKnown RBP23.4■■□□□ 1.34
CLSTN1-202ENST00000377298 PNNQ9H307 717 aaKnown RBP23.39■■□□□ 1.34
CLSTN1-202ENST00000377298 NEUROD2Q15784 382 aa23.39■■□□□ 1.33
CLSTN1-202ENST00000377298 SRPK2P78362 688 aaKnown RBP23.38■■□□□ 1.33
CLSTN1-202ENST00000377298 RAB3GAP2Q9H2M9 1393 aa23.38■■□□□ 1.33
CLSTN1-202ENST00000377298 TNNT2P45379 298 aaPredicted RBP23.37■■□□□ 1.33
CLSTN1-202ENST00000377298 FTSJ3Q8IY81 847 aaKnown RBP23.34■■□□□ 1.33
CLSTN1-202ENST00000377298 FOXD1Q16676 465 aa23.33■■□□□ 1.33
CLSTN1-202ENST00000377298 ARXQ96QS3 562 aa23.33■■□□□ 1.33
CLSTN1-202ENST00000377298 SPAG9O60271 1321 aaKnown RBP23.33■■□□□ 1.33
CLSTN1-202ENST00000377298 KIF3BO15066 747 aa23.33■■□□□ 1.33
CLSTN1-202ENST00000377298 HNRNPMP52272 730 aaKnown RBP eCLIP23.33■■□□□ 1.33
CLSTN1-202ENST00000377298 U2SURPO15042 1029 aaKnown RBP23.33■■□□□ 1.32
CLSTN1-202ENST00000377298 HSPA5P11021 654 aaKnown RBP23.32■■□□□ 1.32
CLSTN1-202ENST00000377298 LAS1LQ9Y4W2 734 aaKnown RBP23.31■■□□□ 1.32
CLSTN1-202ENST00000377298 SENP3-EIF4A1A0A087X0R7 540 aa23.31■■□□□ 1.32
CLSTN1-202ENST00000377298 NCAPD3P42695 1498 aa23.29■■□□□ 1.32
CLSTN1-202ENST00000377298 MORC1Q86VD1 984 aa23.28■■□□□ 1.32
CLSTN1-202ENST00000377298 SAFB2Q14151 953 aaKnown RBP eCLIP23.27■■□□□ 1.32
CLSTN1-202ENST00000377298 PTPRGP23470 1445 aa23.27■■□□□ 1.32
CLSTN1-202ENST00000377298 SUPT16HQ9Y5B9 1047 aaKnown RBP23.26■■□□□ 1.31
CLSTN1-202ENST00000377298 CHMP4BQ9H444 224 aaKnown RBP23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms