RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 MNX1P50219 401 aaPredicted RBP7.62□□□□□ -1.19
VPS13A-206ENST00000376646 C7P10643 843 aa7.61□□□□□ -1.19
VPS13A-206ENST00000376646 SLC39A7Q92504 469 aa7.59□□□□□ -1.19
VPS13A-206ENST00000376646 MIER1Q8N108 512 aa7.59□□□□□ -1.19
VPS13A-206ENST00000376646 TMEM121BQ9BXQ6 578 aaPredicted RBP7.59□□□□□ -1.19
VPS13A-206ENST00000376646 PLCD3Q8N3E9 789 aa7.55□□□□□ -1.2
VPS13A-206ENST00000376646 ZNF579Q8NAF0 562 aaKnown RBP7.53□□□□□ -1.2
VPS13A-206ENST00000376646 ZRANB1Q9UGI0 708 aa7.53□□□□□ -1.2
VPS13A-206ENST00000376646 NPM1P06748 294 aaKnown RBP eCLIP7.51□□□□□ -1.21
VPS13A-206ENST00000376646 FBXO3Q9UK99 471 aa7.49□□□□□ -1.21
VPS13A-206ENST00000376646 LOC100996750A0A140TA64 210 aa7.48□□□□□ -1.21
VPS13A-206ENST00000376646 PLEKHG5O94827 1062 aa7.48□□□□□ -1.21
VPS13A-206ENST00000376646 KRTAP4-6Q9BYQ5 205 aa7.48□□□□□ -1.21
VPS13A-206ENST00000376646 TSPYL2Q9H2G4 693 aaPredicted RBP7.48□□□□□ -1.21
VPS13A-206ENST00000376646 PHF12Q96QT6 1004 aa7.48□□□□□ -1.21
VPS13A-206ENST00000376646 VASPP50552 380 aaPredicted RBP7.47□□□□□ -1.21
VPS13A-206ENST00000376646 RASEFQ8IZ41 740 aa7.47□□□□□ -1.21
VPS13A-206ENST00000376646 METRNQ9UJH8 293 aa7.47□□□□□ -1.21
VPS13A-206ENST00000376646 PAK3O75914 559 aaPredicted RBP7.44□□□□□ -1.22
VPS13A-206ENST00000376646 GALR2O43603 387 aaPredicted RBP7.41□□□□□ -1.22
VPS13A-206ENST00000376646 ST18O60284 1047 aa7.41□□□□□ -1.22
VPS13A-206ENST00000376646 NUBP1P53384 320 aa7.41□□□□□ -1.22
VPS13A-206ENST00000376646 KLHL34Q8N239 644 aa7.4□□□□□ -1.23
VPS13A-206ENST00000376646 CCDC61Q9Y6R9 512 aa7.4□□□□□ -1.23
VPS13A-206ENST00000376646 IFNLR1Q8IU57 520 aaPredicted RBP7.39□□□□□ -1.23
VPS13A-206ENST00000376646 ZBTB47Q9UFB7 747 aaPredicted RBP7.39□□□□□ -1.23
VPS13A-206ENST00000376646 POTEJP0CG39 1038 aa7.37□□□□□ -1.23
VPS13A-206ENST00000376646 MS4A3Q96HJ5 214 aa7.36□□□□□ -1.23
VPS13A-206ENST00000376646 RNF166Q96A37 237 aaPredicted RBP7.36□□□□□ -1.23
VPS13A-206ENST00000376646 SNPHO15079 494 aa7.34□□□□□ -1.24
VPS13A-206ENST00000376646 KIF12Q96FN5 646 aa7.34□□□□□ -1.24
VPS13A-206ENST00000376646 MAP3K13O43283 966 aa7.33□□□□□ -1.24
VPS13A-206ENST00000376646 DCAF8Q5TAQ9 597 aa7.32□□□□□ -1.24
VPS13A-206ENST00000376646 FAM212AQ96EL1 285 aa7.32□□□□□ -1.24
VPS13A-206ENST00000376646 TRPC6Q9Y210 931 aa7.32□□□□□ -1.24
VPS13A-206ENST00000376646 PYGBP11216 843 aa7.3□□□□□ -1.24
VPS13A-206ENST00000376646 RGS20O76081 388 aa7.29□□□□□ -1.24
VPS13A-206ENST00000376646 PELP1Q8IZL8 1130 aaKnown RBP7.27□□□□□ -1.24
VPS13A-206ENST00000376646 SPOCK2Q92563 424 aa7.27□□□□□ -1.24
VPS13A-206ENST00000376646 PCDHB13Q9Y5F0 798 aa7.27□□□□□ -1.25
VPS13A-206ENST00000376646 IFNL1Q8IU54 200 aa7.25□□□□□ -1.25
VPS13A-206ENST00000376646 CIZ1Q9ULV3 898 aaPredicted RBP7.25□□□□□ -1.25
VPS13A-206ENST00000376646 ATMINO43313 823 aaPredicted RBP7.23□□□□□ -1.25
VPS13A-206ENST00000376646 ATN1P54259 1190 aaPredicted RBP7.22□□□□□ -1.25
VPS13A-206ENST00000376646 BMP2KQ9NSY1 1161 aaPredicted RBP7.22□□□□□ -1.25
VPS13A-206ENST00000376646 PCDHB8Q9UN66 801 aa7.22□□□□□ -1.25
VPS13A-206ENST00000376646 GSE1Q14687 1217 aa7.21□□□□□ -1.25
VPS13A-206ENST00000376646 ASTLQ6HA08 431 aaPredicted RBP7.21□□□□□ -1.25
VPS13A-206ENST00000376646 PTGER2P43116 358 aa7.21□□□□□ -1.26
VPS13A-206ENST00000376646 TTLL13PA6NNM8 815 aa7.18□□□□□ -1.26
VPS13A-206ENST00000376646 IRX2Q9BZI1 471 aaPredicted RBP7.18□□□□□ -1.26
VPS13A-206ENST00000376646 SGIP1Q9BQI5 828 aa7.18□□□□□ -1.26
VPS13A-206ENST00000376646 TIE1P35590 1138 aa7.17□□□□□ -1.26
VPS13A-206ENST00000376646 TMEM106CQ9BVX2 250 aa7.16□□□□□ -1.26
VPS13A-206ENST00000376646 TRIM35Q9UPQ4 493 aa7.15□□□□□ -1.27
VPS13A-206ENST00000376646 CHRM1P11229 460 aaPredicted RBP7.13□□□□□ -1.27
VPS13A-206ENST00000376646 POTEFA5A3E0 1075 aa7.12□□□□□ -1.27
VPS13A-206ENST00000376646 COLQQ9Y215 455 aaPredicted RBP7.11□□□□□ -1.27
VPS13A-206ENST00000376646 ZNF467Q7Z7K2 595 aaPredicted RBP7.11□□□□□ -1.27
VPS13A-206ENST00000376646 KRTAP3-3Q9BYR6 98 aa7.11□□□□□ -1.27
VPS13A-206ENST00000376646 KRTAP3-2Q9BYR7 98 aa7.11□□□□□ -1.27
VPS13A-206ENST00000376646 MYT1LQ9UL68 1186 aa7.1□□□□□ -1.27
VPS13A-206ENST00000376646 RNF25Q96BH1 459 aaPredicted RBP7.1□□□□□ -1.27
VPS13A-206ENST00000376646 PSEN1P49768 467 aa7.08□□□□□ -1.28
VPS13A-206ENST00000376646 SEC24BO95487 1268 aa7.06□□□□□ -1.28
VPS13A-206ENST00000376646 PKD2Q13563 968 aa7.06□□□□□ -1.28
VPS13A-206ENST00000376646 PDAP1Q13442 181 aaKnown RBP7.05□□□□□ -1.28
VPS13A-206ENST00000376646 SLAIN1Q8ND83 568 aa7.05□□□□□ -1.28
VPS13A-206ENST00000376646 PLA2G2EQ9NZK7 142 aa7.04□□□□□ -1.28
VPS13A-206ENST00000376646 TRIM41Q8WV44 630 aa7.03□□□□□ -1.28
VPS13A-206ENST00000376646 ECM2O94769 699 aaPredicted RBP7.02□□□□□ -1.29
VPS13A-206ENST00000376646 IER5LQ5T953 404 aa7.02□□□□□ -1.29
VPS13A-206ENST00000376646 CABP2Q9NPB3 220 aa7.02□□□□□ -1.29
VPS13A-206ENST00000376646 RIOK3O14730 519 aaKnown RBP7.02□□□□□ -1.29
VPS13A-206ENST00000376646 IRX5P78411 483 aaPredicted RBP7.02□□□□□ -1.29
VPS13A-206ENST00000376646 RGL2O15211 777 aa7□□□□□ -1.29
VPS13A-206ENST00000376646 PLCG2P16885 1265 aa7□□□□□ -1.29
VPS13A-206ENST00000376646 GOLGA2Q08379 1002 aa7□□□□□ -1.29
VPS13A-206ENST00000376646 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.99□□□□□ -1.29
VPS13A-206ENST00000376646 ZFP91Q96JP5 570 aaPredicted RBP6.99□□□□□ -1.29
VPS13A-206ENST00000376646 MKRN3Q13064 507 aaKnown RBP6.98□□□□□ -1.29
VPS13A-206ENST00000376646 EMP3P54852 163 aa6.98□□□□□ -1.29
VPS13A-206ENST00000376646 OCEL1Q9H607 264 aa6.98□□□□□ -1.29
VPS13A-206ENST00000376646 PDCD7Q8N8D1 485 aaKnown RBP6.97□□□□□ -1.29
VPS13A-206ENST00000376646 EFCAB3Q8N7B9 438 aa6.97□□□□□ -1.29
VPS13A-206ENST00000376646 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.97□□□□□ -1.297e-7■■■■□ 23
VPS13A-206ENST00000376646 DPY19L2Q6NUT2 758 aa6.96□□□□□ -1.3
VPS13A-206ENST00000376646 VGFO15240 615 aaPredicted RBP6.96□□□□□ -1.3
VPS13A-206ENST00000376646 BCL11BQ9C0K0 894 aaPredicted RBP6.93□□□□□ -1.3
VPS13A-206ENST00000376646 STK25O00506 426 aa6.92□□□□□ -1.3
VPS13A-206ENST00000376646 STK24Q9Y6E0 443 aa6.92□□□□□ -1.3
VPS13A-206ENST00000376646 HS3ST6Q96QI5 342 aa6.91□□□□□ -1.3
VPS13A-206ENST00000376646 ILDR1Q86SU0 546 aaPredicted RBP6.9□□□□□ -1.3
VPS13A-206ENST00000376646 PHF8Q9UPP1 1060 aa6.89□□□□□ -1.31
VPS13A-206ENST00000376646 MS4A4AQ96JQ5 239 aa6.88□□□□□ -1.31
VPS13A-206ENST00000376646 MARVELD3Q96A59 401 aa6.87□□□□□ -1.31
VPS13A-206ENST00000376646 MFRPQ9BY79 579 aa6.84□□□□□ -1.31
VPS13A-206ENST00000376646 TAOK2Q9UL54 1235 aa6.84□□□□□ -1.31
VPS13A-206ENST00000376646 C3orf67Q6ZVT6 689 aa6.84□□□□□ -1.31
VPS13A-206ENST00000376646 L3MBTL3Q96JM7 780 aaPredicted RBP6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms