RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 MRS2Q9HD23 443 aa16.38■□□□□ 0.21
VPS13A-204ENST00000376634 TULP1O00294 542 aaPredicted RBP16.36■□□□□ 0.21
VPS13A-204ENST00000376634 ZBTB7CA1YPR0 619 aa16.35■□□□□ 0.21
VPS13A-204ENST00000376634 KAT6BQ8WYB5 2073 aa16.34■□□□□ 0.21
VPS13A-204ENST00000376634 GOLGA6L6A8MZA4 724 aa16.33■□□□□ 0.2
VPS13A-204ENST00000376634 KDM2AQ9Y2K7 1162 aa16.31■□□□□ 0.2
VPS13A-204ENST00000376634 FTSJ3Q8IY81 847 aaKnown RBP16.3■□□□□ 0.2
VPS13A-204ENST00000376634 CSRNP3Q8WYN3 585 aa16.3■□□□□ 0.2
VPS13A-204ENST00000376634 DCAF1Q9Y4B6 1507 aa16.29■□□□□ 0.2
VPS13A-204ENST00000376634 PPP1R15AO75807 674 aaPredicted RBP16.29■□□□□ 0.2
VPS13A-204ENST00000376634 NAP1L5Q96NT1 182 aaPredicted RBP16.28■□□□□ 0.2
VPS13A-204ENST00000376634 PLEKHG5O94827 1062 aa16.27■□□□□ 0.2
VPS13A-204ENST00000376634 ERICH6BQ5W0A0 696 aa16.27■□□□□ 0.19
VPS13A-204ENST00000376634 CCDC180Q9P1Z9 1646 aa16.26■□□□□ 0.19
VPS13A-204ENST00000376634 TPRNQ4KMQ1 711 aa16.25■□□□□ 0.19
VPS13A-204ENST00000376634 HAP1P54257 671 aaPredicted RBP16.25■□□□□ 0.19
VPS13A-204ENST00000376634 IRX6P78412 446 aaPredicted RBP16.25■□□□□ 0.19
VPS13A-204ENST00000376634 MTUS2Q5JR59 1369 aa16.25■□□□□ 0.19
VPS13A-204ENST00000376634 CHIC2Q9UKJ5 165 aa16.25■□□□□ 0.19
VPS13A-204ENST00000376634 NPHP1O15259 732 aa16.22■□□□□ 0.19
VPS13A-204ENST00000376634 NRDCO43847 1150 aa16.22■□□□□ 0.19
VPS13A-204ENST00000376634 TSPY4P0CV99 314 aa16.22■□□□□ 0.19
VPS13A-204ENST00000376634 TSPY10P0CW01 314 aa16.22■□□□□ 0.19
VPS13A-204ENST00000376634 CFAP53Q96M91 514 aa16.21■□□□□ 0.19
VPS13A-204ENST00000376634 CHAF1AQ13111 956 aaPredicted RBP16.18■□□□□ 0.18
VPS13A-204ENST00000376634 FGD1P98174 961 aa16.17■□□□□ 0.18
VPS13A-204ENST00000376634 SENP3Q9H4L4 574 aaPredicted RBP16.16■□□□□ 0.18
VPS13A-204ENST00000376634 EIF4G2P78344 907 aaKnown RBP eCLIP16.14■□□□□ 0.17
VPS13A-204ENST00000376634 CLSTN1O94985 981 aa16.14■□□□□ 0.17
VPS13A-204ENST00000376634 GOLGA2Q08379 1002 aa16.14■□□□□ 0.17
VPS13A-204ENST00000376634 KNSTRNQ9Y448 316 aa16.13■□□□□ 0.17
VPS13A-204ENST00000376634 TAOK2Q9UL54 1235 aa16.12■□□□□ 0.17
VPS13A-204ENST00000376634 CDCA8Q53HL2 280 aa16.12■□□□□ 0.17
VPS13A-204ENST00000376634 PPM1GO15355 546 aaPredicted RBP16.11■□□□□ 0.17
VPS13A-204ENST00000376634 OS9Q13438 667 aaPredicted RBP16.11■□□□□ 0.17
VPS13A-204ENST00000376634 KCNJ4P48050 445 aa16.1■□□□□ 0.17
VPS13A-204ENST00000376634 HSP90AB1P08238 724 aaKnown RBP16.1■□□□□ 0.17
VPS13A-204ENST00000376634 PLCB2Q00722 1185 aa16.1■□□□□ 0.17
VPS13A-204ENST00000376634 CHMP4BQ9H444 224 aaKnown RBP16.09■□□□□ 0.17
VPS13A-204ENST00000376634 NAP1L2Q9ULW6 460 aaPredicted RBP16.09■□□□□ 0.17
VPS13A-204ENST00000376634 RSF1Q96T23 1441 aaPredicted RBP16.08■□□□□ 0.17
VPS13A-204ENST00000376634 NCBP3Q53F19 620 aaKnown RBP16.08■□□□□ 0.17
VPS13A-204ENST00000376634 MAPK8IP3Q9UPT6 1336 aa16.08■□□□□ 0.16
VPS13A-204ENST00000376634 L1TD1Q5T7N2 865 aaKnown RBP16.07■□□□□ 0.16
VPS13A-204ENST00000376634 LAS1LQ9Y4W2 734 aaKnown RBP16.07■□□□□ 0.16
VPS13A-204ENST00000376634 ARID4BQ4LE39 1312 aaPredicted RBP16.06■□□□□ 0.16
VPS13A-204ENST00000376634 GOLGA6L4A6NEF3 574 aa16.05■□□□□ 0.16
VPS13A-204ENST00000376634 CLIP1P30622 1438 aa16.05■□□□□ 0.16
VPS13A-204ENST00000376634 RTN4Q9NQC3 1192 aaKnown RBP16.05■□□□□ 0.16
VPS13A-204ENST00000376634 CHMP7Q8WUX9 453 aaPredicted RBP16.04■□□□□ 0.16
VPS13A-204ENST00000376634 AMER1Q5JTC6 1135 aaPredicted RBP16.04■□□□□ 0.16
VPS13A-204ENST00000376634 KIAA2012Q0VF49 1180 aa16.03■□□□□ 0.16
VPS13A-204ENST00000376634 HIRIP3Q9BW71 556 aaPredicted RBP16.02■□□□□ 0.15
VPS13A-204ENST00000376634 DRC7Q8IY82 874 aa16.01■□□□□ 0.15
VPS13A-204ENST00000376634 MSNP26038 577 aaKnown RBP16.01■□□□□ 0.15
VPS13A-204ENST00000376634 ZCCHC6Q5VYS8 1495 aaKnown RBP16.01■□□□□ 0.15
VPS13A-204ENST00000376634 RRP7BPQ9NSQ0 103 aa16■□□□□ 0.15
VPS13A-204ENST00000376634 MIER1Q8N108 512 aa15.99■□□□□ 0.15
VPS13A-204ENST00000376634 NOC3LQ8WTT2 800 aaKnown RBP15.99■□□□□ 0.15
VPS13A-204ENST00000376634 MS4A1P11836 297 aa15.99■□□□□ 0.15
VPS13A-204ENST00000376634 HSCBQ8IWL3 235 aa15.99■□□□□ 0.15
VPS13A-204ENST00000376634 GNL2Q13823 731 aaKnown RBP15.99■□□□□ 0.15
VPS13A-204ENST00000376634 MCCP23508 829 aa15.97■□□□□ 0.15
VPS13A-204ENST00000376634 RGS3P49796 1198 aa15.97■□□□□ 0.15
VPS13A-204ENST00000376634 NUDCQ9Y266 331 aa15.97■□□□□ 0.15
VPS13A-204ENST00000376634 PNNQ9H307 717 aaKnown RBP15.97■□□□□ 0.15
VPS13A-204ENST00000376634 LMOD2Q6P5Q4 547 aa15.96■□□□□ 0.15
VPS13A-204ENST00000376634 NOP58Q9Y2X3 529 aaKnown RBP15.96■□□□□ 0.14
VPS13A-204ENST00000376634 RGL3Q3MIN7 710 aa15.94■□□□□ 0.14
VPS13A-204ENST00000376634 FRAT1Q92837 279 aaPredicted RBP15.94■□□□□ 0.14
VPS13A-204ENST00000376634 ISY1Q9ULR0 285 aaKnown RBP15.94■□□□□ 0.14
VPS13A-204ENST00000376634 NEUROD2Q15784 382 aa15.93■□□□□ 0.14
VPS13A-204ENST00000376634 POGKQ9P215 609 aa15.93■□□□□ 0.14
VPS13A-204ENST00000376634 KCNH8Q96L42 1107 aa15.92■□□□□ 0.14
VPS13A-204ENST00000376634 RB1CC1Q8TDY2 1594 aa15.91■□□□□ 0.14
VPS13A-204ENST00000376634 GOLGA3Q08378 1498 aa15.91■□□□□ 0.14
VPS13A-204ENST00000376634 SUPT16HQ9Y5B9 1047 aaKnown RBP15.9■□□□□ 0.14
VPS13A-204ENST00000376634 CARD11Q9BXL7 1154 aa15.88■□□□□ 0.13
VPS13A-204ENST00000376634 CFAP44Q96MT7 982 aa15.87■□□□□ 0.13
VPS13A-204ENST00000376634 PLEKHD1A6NEE1 506 aa15.86■□□□□ 0.13
VPS13A-204ENST00000376634 SENP3-EIF4A1A0A087X0R7 540 aa15.86■□□□□ 0.13
VPS13A-204ENST00000376634 TNNT3P45378 269 aaPredicted RBP15.85■□□□□ 0.13
VPS13A-204ENST00000376634 PRM3Q9NNZ6 103 aa15.85■□□□□ 0.13
VPS13A-204ENST00000376634 KIAA1211Q6ZU35 1233 aa15.85■□□□□ 0.13
VPS13A-204ENST00000376634 PPP4R2Q9NY27 417 aa15.84■□□□□ 0.13
VPS13A-204ENST00000376634 U2SURPO15042 1029 aaKnown RBP15.84■□□□□ 0.13
VPS13A-204ENST00000376634 KANK1Q14678 1352 aa15.84■□□□□ 0.13
VPS13A-204ENST00000376634 PTMSP20962 102 aa15.83■□□□□ 0.12
VPS13A-204ENST00000376634 CC2D1BQ5T0F9 858 aaKnown RBP15.81■□□□□ 0.12
VPS13A-204ENST00000376634 CFDP1Q9UEE9 299 aaPredicted RBP15.81■□□□□ 0.12
VPS13A-204ENST00000376634 ERCC6Q03468 1493 aa15.8■□□□□ 0.12
VPS13A-204ENST00000376634 CEP162Q5TB80 1403 aa15.8■□□□□ 0.12
VPS13A-204ENST00000376634 GOLGA6L1Q8N7Z2 621 aa15.8■□□□□ 0.12
VPS13A-204ENST00000376634 EIF4G1Q04637 1599 aaKnown RBP15.79■□□□□ 0.12
VPS13A-204ENST00000376634 A0A0U1RQG5 324 aaPredicted RBP15.79■□□□□ 0.12
VPS13A-204ENST00000376634 EEA1Q15075 1411 aa15.78■□□□□ 0.12
VPS13A-204ENST00000376634 SYAP1Q96A49 352 aaPredicted RBP15.78■□□□□ 0.12
VPS13A-204ENST00000376634 GBP4Q96PP9 640 aa15.77■□□□□ 0.11
VPS13A-204ENST00000376634 HTATSF1O43719 755 aaKnown RBP15.77■□□□□ 0.11
VPS13A-204ENST00000376634 SPRYD3Q8NCJ5 442 aa15.76■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms