RNA–Protein interactions for RNA: ENST00000375604.6

MCF2L-203, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

APPRIS P3 TSL 2 BASIC

Gene MCF2L, Length 6,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-203ENST00000375604 CCDC136Q96JN2 1154 aa23.03■■□□□ 1.28
MCF2L-203ENST00000375604 UPF2Q9HAU5 1272 aaKnown RBP23■■□□□ 1.27
MCF2L-203ENST00000375604 MIER1Q8N108 512 aa22.99■■□□□ 1.27
MCF2L-203ENST00000375604 EIF5BO60841 1220 aaKnown RBP22.97■■□□□ 1.27
MCF2L-203ENST00000375604 PPM1GO15355 546 aaPredicted RBP22.97■■□□□ 1.27
MCF2L-203ENST00000375604 ZCCHC6Q5VYS8 1495 aaKnown RBP22.96■■□□□ 1.27
MCF2L-203ENST00000375604 ANP32BQ92688 251 aaKnown RBP22.91■■□□□ 1.26
MCF2L-203ENST00000375604 TPRNQ4KMQ1 711 aa22.9■■□□□ 1.26
MCF2L-203ENST00000375604 CLIP1P30622 1438 aa22.88■■□□□ 1.25
MCF2L-203ENST00000375604 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.88■■□□□ 1.25
MCF2L-203ENST00000375604 HAP1P54257 671 aaPredicted RBP22.87■■□□□ 1.25
MCF2L-203ENST00000375604 MYO15BQ96JP2 1530 aa22.86■■□□□ 1.25
MCF2L-203ENST00000375604 TNNT2P45379 298 aaPredicted RBP22.83■■□□□ 1.25
MCF2L-203ENST00000375604 LAS1LQ9Y4W2 734 aaKnown RBP22.82■■□□□ 1.24
MCF2L-203ENST00000375604 LMOD2Q6P5Q4 547 aa22.82■■□□□ 1.24
MCF2L-203ENST00000375604 NEUROD2Q15784 382 aa22.82■■□□□ 1.24
MCF2L-203ENST00000375604 PLEKHD1A6NEE1 506 aa22.81■■□□□ 1.24
MCF2L-203ENST00000375604 TAOK2Q9UL54 1235 aa22.8■■□□□ 1.24
MCF2L-203ENST00000375604 EIF4G2P78344 907 aaKnown RBP eCLIP22.79■■□□□ 1.24
MCF2L-203ENST00000375604 DCAF1Q9Y4B6 1507 aa22.79■■□□□ 1.24
MCF2L-203ENST00000375604 MYH16Q9H6N6 1097 aa22.78■■□□□ 1.24
MCF2L-203ENST00000375604 TULP1O00294 542 aaPredicted RBP22.75■■□□□ 1.23
MCF2L-203ENST00000375604 CFDP1Q9UEE9 299 aaPredicted RBP22.71■■□□□ 1.23
MCF2L-203ENST00000375604 MLECQ14165 292 aa22.7■■□□□ 1.22
MCF2L-203ENST00000375604 SIN3AQ96ST3 1273 aa22.7■■□□□ 1.22
MCF2L-203ENST00000375604 CC2D1BQ5T0F9 858 aaKnown RBP22.68■■□□□ 1.22
MCF2L-203ENST00000375604 CEP162Q5TB80 1403 aa22.68■■□□□ 1.22
MCF2L-203ENST00000375604 SOX12O15370 315 aa22.67■■□□□ 1.22
MCF2L-203ENST00000375604 ERCC6Q03468 1493 aa22.67■■□□□ 1.22
MCF2L-203ENST00000375604 CARD11Q9BXL7 1154 aa22.66■■□□□ 1.22
MCF2L-203ENST00000375604 RB1CC1Q8TDY2 1594 aa22.64■■□□□ 1.22
MCF2L-203ENST00000375604 TRHP20396 242 aaPredicted RBP22.64■■□□□ 1.22
MCF2L-203ENST00000375604 EIF4G1Q04637 1599 aaKnown RBP22.61■■□□□ 1.21
MCF2L-203ENST00000375604 KNSTRNQ9Y448 316 aa22.61■■□□□ 1.21
MCF2L-203ENST00000375604 GOLGA3Q08378 1498 aa22.61■■□□□ 1.21
MCF2L-203ENST00000375604 BAZ1BQ9UIG0 1483 aaKnown RBP22.6■■□□□ 1.21
MCF2L-203ENST00000375604 SAFB2Q14151 953 aaKnown RBP eCLIP22.59■■□□□ 1.21
MCF2L-203ENST00000375604 POGKQ9P215 609 aa22.59■■□□□ 1.21
MCF2L-203ENST00000375604 RSF1Q96T23 1441 aaPredicted RBP22.58■■□□□ 1.2
MCF2L-203ENST00000375604 SUPT16HQ9Y5B9 1047 aaKnown RBP22.57■■□□□ 1.2
MCF2L-203ENST00000375604 NCLP19338 710 aaKnown RBP22.57■■□□□ 1.2
MCF2L-203ENST00000375604 FRAT1Q92837 279 aaPredicted RBP22.54■■□□□ 1.2
MCF2L-203ENST00000375604 WRNQ14191 1432 aaPredicted RBP eCLIP22.54■■□□□ 1.2
MCF2L-203ENST00000375604 FTSJ3Q8IY81 847 aaKnown RBP22.53■■□□□ 1.2
MCF2L-203ENST00000375604 CFAP53Q96M91 514 aa22.52■■□□□ 1.2
MCF2L-203ENST00000375604 NPHP1O15259 732 aa22.51■■□□□ 1.19
MCF2L-203ENST00000375604 U2SURPO15042 1029 aaKnown RBP22.51■■□□□ 1.19
MCF2L-203ENST00000375604 CCDC180Q9P1Z9 1646 aa22.51■■□□□ 1.19
MCF2L-203ENST00000375604 RGS3P49796 1198 aa22.45■■□□□ 1.18
MCF2L-203ENST00000375604 FOXD1Q16676 465 aa22.45■■□□□ 1.18
MCF2L-203ENST00000375604 MAPK8IP3Q9UPT6 1336 aa22.45■■□□□ 1.18
MCF2L-203ENST00000375604 DCAF11Q8TEB1 546 aa22.43■■□□□ 1.18
MCF2L-203ENST00000375604 CDK11BP21127 795 aaKnown RBP22.42■■□□□ 1.18
MCF2L-203ENST00000375604 KIF27Q86VH2 1401 aa22.42■■□□□ 1.18
MCF2L-203ENST00000375604 STK26Q9P289 416 aa22.42■■□□□ 1.18
MCF2L-203ENST00000375604 OS9Q13438 667 aaPredicted RBP22.35■■□□□ 1.17
MCF2L-203ENST00000375604 BECN1Q14457 450 aa22.35■■□□□ 1.17
MCF2L-203ENST00000375604 SRPK2P78362 688 aaKnown RBP22.35■■□□□ 1.17
MCF2L-203ENST00000375604 NAP1L2Q9ULW6 460 aaPredicted RBP22.35■■□□□ 1.17
MCF2L-203ENST00000375604 GGT6Q6P531 493 aa22.34■■□□□ 1.17
MCF2L-203ENST00000375604 CCNB3Q8WWL7 1395 aa22.33■■□□□ 1.17
MCF2L-203ENST00000375604 CDCA8Q53HL2 280 aa22.32■■□□□ 1.16
MCF2L-203ENST00000375604 CASC1Q6TDU7 716 aa22.31■■□□□ 1.16
MCF2L-203ENST00000375604 SPRYD3Q8NCJ5 442 aa22.3■■□□□ 1.16
MCF2L-203ENST00000375604 NUTM2DQ5VT03 806 aaPredicted RBP22.29■■□□□ 1.16
MCF2L-203ENST00000375604 NUDCQ9Y266 331 aa22.29■■□□□ 1.16
MCF2L-203ENST00000375604 DDRGK1Q96HY6 314 aa22.28■■□□□ 1.16
MCF2L-203ENST00000375604 CEP164Q9UPV0 1460 aa22.28■■□□□ 1.16
MCF2L-203ENST00000375604 B4GALNT3Q6L9W6 998 aa22.27■■□□□ 1.16
MCF2L-203ENST00000375604 SOGA1O94964 1423 aa22.27■■□□□ 1.15
MCF2L-203ENST00000375604 PLCB2Q00722 1185 aa22.26■■□□□ 1.15
MCF2L-203ENST00000375604 PAK3O75914 559 aaPredicted RBP22.26■■□□□ 1.15
MCF2L-203ENST00000375604 APBB1O00213 710 aa22.24■■□□□ 1.15
MCF2L-203ENST00000375604 CUX2O14529 1486 aa22.24■■□□□ 1.15
MCF2L-203ENST00000375604 CECR2Q9BXF3 1484 aa22.24■■□□□ 1.15
MCF2L-203ENST00000375604 TRIM44Q96DX7 344 aaPredicted RBP22.24■■□□□ 1.15
MCF2L-203ENST00000375604 TNIKQ9UKE5 1360 aa22.22■■□□□ 1.15
MCF2L-203ENST00000375604 RTN4Q9NQC3 1192 aaKnown RBP22.22■■□□□ 1.15
MCF2L-203ENST00000375604 PTMAP06454 111 aaKnown RBP22.22■■□□□ 1.15
MCF2L-203ENST00000375604 ZRSR1Q15695 479 aaKnown RBP22.2■■□□□ 1.14
MCF2L-203ENST00000375604 ZNF330Q9Y3S2 320 aaPredicted RBP22.2■■□□□ 1.14
MCF2L-203ENST00000375604 GOLGA6L22H0YM25 854 aa22.19■■□□□ 1.14
MCF2L-203ENST00000375604 TMF1P82094 1093 aa22.19■■□□□ 1.14
MCF2L-203ENST00000375604 EEA1Q15075 1411 aa22.18■■□□□ 1.14
MCF2L-203ENST00000375604 ABCC8Q09428 1581 aa22.18■■□□□ 1.14
MCF2L-203ENST00000375604 GOLGA2Q08379 1002 aa22.18■■□□□ 1.14
MCF2L-203ENST00000375604 MORC1Q86VD1 984 aa22.18■■□□□ 1.14
MCF2L-203ENST00000375604 CARMIL1Q5VZK9 1371 aa22.17■■□□□ 1.14
MCF2L-203ENST00000375604 FGD1P98174 961 aa22.17■■□□□ 1.14
MCF2L-203ENST00000375604 KCNJ4P48050 445 aa22.16■■□□□ 1.14
MCF2L-203ENST00000375604 KANK1Q14678 1352 aa22.16■■□□□ 1.14
MCF2L-203ENST00000375604 AMER1Q5JTC6 1135 aaPredicted RBP22.15■■□□□ 1.14
MCF2L-203ENST00000375604 NACADO15069 1562 aa22.15■■□□□ 1.14
MCF2L-203ENST00000375604 KANK4Q5T7N3 995 aaPredicted RBP22.15■■□□□ 1.14
MCF2L-203ENST00000375604 HSP90AB1P08238 724 aaKnown RBP22.14■■□□□ 1.14
MCF2L-203ENST00000375604 HSPA5P11021 654 aaKnown RBP22.13■■□□□ 1.13
MCF2L-203ENST00000375604 DNTTIP2Q5QJE6 756 aaKnown RBP22.13■■□□□ 1.13
MCF2L-203ENST00000375604 NCBP3Q53F19 620 aaKnown RBP22.13■■□□□ 1.13
MCF2L-203ENST00000375604 PKD2Q13563 968 aa22.12■■□□□ 1.13
MCF2L-203ENST00000375604 ISY1Q9ULR0 285 aaKnown RBP22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms