RNA–Protein interactions for RNA: ENST00000373887.7

TRAF1-201, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 6,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-201ENST00000373887 HIRIP3Q9BW71 556 aaPredicted RBP19.24■□□□□ 0.67
TRAF1-201ENST00000373887 TRHP20396 242 aaPredicted RBP19.21■□□□□ 0.67
TRAF1-201ENST00000373887 HNRNPUQ00839 825 aaKnown RBP eCLIP19.21■□□□□ 0.67
TRAF1-201ENST00000373887 PLEKHD1A6NEE1 506 aa19.18■□□□□ 0.66
TRAF1-201ENST00000373887 RGL3Q3MIN7 710 aa19.17■□□□□ 0.66
TRAF1-201ENST00000373887 CDK11BP21127 795 aaKnown RBP19.17■□□□□ 0.66
TRAF1-201ENST00000373887 BAZ1BQ9UIG0 1483 aaKnown RBP19.15■□□□□ 0.66
TRAF1-201ENST00000373887 HAP1P54257 671 aaPredicted RBP19.13■□□□□ 0.65
TRAF1-201ENST00000373887 CCDC136Q96JN2 1154 aa19.11■□□□□ 0.65
TRAF1-201ENST00000373887 TMC1Q8TDI8 760 aa19.11■□□□□ 0.65
TRAF1-201ENST00000373887 SENP3-EIF4A1A0A087X0R7 540 aa19.09■□□□□ 0.65
TRAF1-201ENST00000373887 CLIP1P30622 1438 aa19.09■□□□□ 0.65
TRAF1-201ENST00000373887 WDR43Q15061 677 aaKnown RBP eCLIP19.09■□□□□ 0.65
TRAF1-201ENST00000373887 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.06■□□□□ 0.64
TRAF1-201ENST00000373887 IRX6P78412 446 aaPredicted RBP19.05■□□□□ 0.64
TRAF1-201ENST00000373887 MLECQ14165 292 aa19.04■□□□□ 0.64
TRAF1-201ENST00000373887 LMOD2Q6P5Q4 547 aa19.03■□□□□ 0.64
TRAF1-201ENST00000373887 CFDP1Q9UEE9 299 aaPredicted RBP19.02■□□□□ 0.64
TRAF1-201ENST00000373887 PPM1GO15355 546 aaPredicted RBP19.01■□□□□ 0.63
TRAF1-201ENST00000373887 TPRNQ4KMQ1 711 aa18.98■□□□□ 0.63
TRAF1-201ENST00000373887 RSF1Q96T23 1441 aaPredicted RBP18.97■□□□□ 0.63
TRAF1-201ENST00000373887 TULP1O00294 542 aaPredicted RBP18.96■□□□□ 0.63
TRAF1-201ENST00000373887 MRS2Q9HD23 443 aa18.96■□□□□ 0.63
TRAF1-201ENST00000373887 EIF4G1Q04637 1599 aaKnown RBP18.96■□□□□ 0.63
TRAF1-201ENST00000373887 WRNQ14191 1432 aaPredicted RBP eCLIP18.96■□□□□ 0.63
TRAF1-201ENST00000373887 NACADO15069 1562 aa18.95■□□□□ 0.62
TRAF1-201ENST00000373887 TRIM44Q96DX7 344 aaPredicted RBP18.93■□□□□ 0.62
TRAF1-201ENST00000373887 MYH16Q9H6N6 1097 aa18.93■□□□□ 0.62
TRAF1-201ENST00000373887 NCLP19338 710 aaKnown RBP18.91■□□□□ 0.62
TRAF1-201ENST00000373887 GOLGA3Q08378 1498 aa18.88■□□□□ 0.61
TRAF1-201ENST00000373887 KIF27Q86VH2 1401 aa18.88■□□□□ 0.61
TRAF1-201ENST00000373887 DCAF1Q9Y4B6 1507 aa18.86■□□□□ 0.61
TRAF1-201ENST00000373887 CEP162Q5TB80 1403 aa18.86■□□□□ 0.61
TRAF1-201ENST00000373887 EIF4G2P78344 907 aaKnown RBP eCLIP18.85■□□□□ 0.61
TRAF1-201ENST00000373887 PTMAP06454 111 aaKnown RBP18.84■□□□□ 0.61
TRAF1-201ENST00000373887 TNNT2P45379 298 aaPredicted RBP18.84■□□□□ 0.61
TRAF1-201ENST00000373887 POGKQ9P215 609 aa18.84■□□□□ 0.61
TRAF1-201ENST00000373887 DNTTIP2Q5QJE6 756 aaKnown RBP18.82■□□□□ 0.6
TRAF1-201ENST00000373887 SOX12O15370 315 aa18.8■□□□□ 0.6
TRAF1-201ENST00000373887 LAS1LQ9Y4W2 734 aaKnown RBP18.8■□□□□ 0.6
TRAF1-201ENST00000373887 BECN1Q14457 450 aa18.8■□□□□ 0.6
TRAF1-201ENST00000373887 TAOK2Q9UL54 1235 aa18.79■□□□□ 0.6
TRAF1-201ENST00000373887 NEUROD2Q15784 382 aa18.79■□□□□ 0.6
TRAF1-201ENST00000373887 CARD11Q9BXL7 1154 aa18.78■□□□□ 0.6
TRAF1-201ENST00000373887 CECR2Q9BXF3 1484 aa18.78■□□□□ 0.6
TRAF1-201ENST00000373887 ZRSR1Q15695 479 aaKnown RBP18.77■□□□□ 0.59
TRAF1-201ENST00000373887 MYO15BQ96JP2 1530 aa18.76■□□□□ 0.59
TRAF1-201ENST00000373887 GOLGA6L22H0YM25 854 aa18.76■□□□□ 0.59
TRAF1-201ENST00000373887 SAFB2Q14151 953 aaKnown RBP eCLIP18.76■□□□□ 0.59
TRAF1-201ENST00000373887 DDRGK1Q96HY6 314 aa18.76■□□□□ 0.59
TRAF1-201ENST00000373887 RTN4Q9NQC3 1192 aaKnown RBP18.76■□□□□ 0.59
TRAF1-201ENST00000373887 KNSTRNQ9Y448 316 aa18.73■□□□□ 0.59
TRAF1-201ENST00000373887 CUX2O14529 1486 aa18.73■□□□□ 0.59
TRAF1-201ENST00000373887 NPHP1O15259 732 aa18.72■□□□□ 0.59
TRAF1-201ENST00000373887 GGT6Q6P531 493 aa18.72■□□□□ 0.59
TRAF1-201ENST00000373887 NAP1L5Q96NT1 182 aaPredicted RBP18.72■□□□□ 0.59
TRAF1-201ENST00000373887 CCNB3Q8WWL7 1395 aa18.71■□□□□ 0.59
TRAF1-201ENST00000373887 SIN3AQ96ST3 1273 aa18.71■□□□□ 0.59
TRAF1-201ENST00000373887 MIER1Q8N108 512 aa18.7■□□□□ 0.58
TRAF1-201ENST00000373887 CFAP53Q96M91 514 aa18.69■□□□□ 0.58
TRAF1-201ENST00000373887 PLCB2Q00722 1185 aa18.69■□□□□ 0.58
TRAF1-201ENST00000373887 CC2D1BQ5T0F9 858 aaKnown RBP18.68■□□□□ 0.58
TRAF1-201ENST00000373887 BAZ1AQ9NRL2 1556 aaPredicted RBP18.66■□□□□ 0.58
TRAF1-201ENST00000373887 AMER1Q5JTC6 1135 aaPredicted RBP18.66■□□□□ 0.58
TRAF1-201ENST00000373887 CEP164Q9UPV0 1460 aa18.66■□□□□ 0.58
TRAF1-201ENST00000373887 CARMIL1Q5VZK9 1371 aa18.65■□□□□ 0.58
TRAF1-201ENST00000373887 EEA1Q15075 1411 aa18.65■□□□□ 0.58
TRAF1-201ENST00000373887 STK26Q9P289 416 aa18.65■□□□□ 0.58
TRAF1-201ENST00000373887 ANP32EQ9BTT0 268 aa18.63■□□□□ 0.57
TRAF1-201ENST00000373887 NCBP3Q53F19 620 aaKnown RBP18.62■□□□□ 0.57
TRAF1-201ENST00000373887 DCAF11Q8TEB1 546 aa18.62■□□□□ 0.57
TRAF1-201ENST00000373887 U2SURPO15042 1029 aaKnown RBP18.62■□□□□ 0.57
TRAF1-201ENST00000373887 CASC1Q6TDU7 716 aa18.61■□□□□ 0.57
TRAF1-201ENST00000373887 TDRD9Q8NDG6 1382 aaKnown RBP18.6■□□□□ 0.57
TRAF1-201ENST00000373887 CDCA8Q53HL2 280 aa18.6■□□□□ 0.57
TRAF1-201ENST00000373887 MAPK8IP3Q9UPT6 1336 aa18.6■□□□□ 0.57
TRAF1-201ENST00000373887 SRPK2P78362 688 aaKnown RBP18.59■□□□□ 0.57
TRAF1-201ENST00000373887 KANK1Q14678 1352 aa18.59■□□□□ 0.57
TRAF1-201ENST00000373887 SOGA1O94964 1423 aa18.58■□□□□ 0.57
TRAF1-201ENST00000373887 FOXD1Q16676 465 aa18.57■□□□□ 0.56
TRAF1-201ENST00000373887 TNIKQ9UKE5 1360 aa18.55■□□□□ 0.56
TRAF1-201ENST00000373887 FTSJ3Q8IY81 847 aaKnown RBP18.55■□□□□ 0.56
TRAF1-201ENST00000373887 PAK3O75914 559 aaPredicted RBP18.54■□□□□ 0.56
TRAF1-201ENST00000373887 ABCC8Q09428 1581 aa18.53■□□□□ 0.56
TRAF1-201ENST00000373887 NUTM2DQ5VT03 806 aaPredicted RBP18.53■□□□□ 0.56
TRAF1-201ENST00000373887 ERICH6BQ5W0A0 696 aa18.52■□□□□ 0.55
TRAF1-201ENST00000373887 NAP1L2Q9ULW6 460 aaPredicted RBP18.51■□□□□ 0.55
TRAF1-201ENST00000373887 FRAT1Q92837 279 aaPredicted RBP18.51■□□□□ 0.55
TRAF1-201ENST00000373887 NUDCQ9Y266 331 aa18.51■□□□□ 0.55
TRAF1-201ENST00000373887 PDS5BQ9NTI5 1447 aa18.5■□□□□ 0.55
TRAF1-201ENST00000373887 RGS3P49796 1198 aa18.49■□□□□ 0.55
TRAF1-201ENST00000373887 HDGFP51858 240 aaKnown RBP18.48■□□□□ 0.55
TRAF1-201ENST00000373887 GOLGA6L6A8MZA4 724 aa18.47■□□□□ 0.55
TRAF1-201ENST00000373887 CLSTN1O94985 981 aa18.47■□□□□ 0.55
TRAF1-201ENST00000373887 CCDC88BA6NC98 1476 aa18.47■□□□□ 0.55
TRAF1-201ENST00000373887 HSP90AB1P08238 724 aaKnown RBP18.47■□□□□ 0.55
TRAF1-201ENST00000373887 SUPT16HQ9Y5B9 1047 aaKnown RBP18.47■□□□□ 0.55
TRAF1-201ENST00000373887 MROH2BQ7Z745 1585 aa18.45■□□□□ 0.54
TRAF1-201ENST00000373887 CARMIL2Q6F5E8 1435 aa18.45■□□□□ 0.54
TRAF1-201ENST00000373887 FHAD1B1AJZ9 1412 aa18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms