RNA–Protein interactions for RNA: ENST00000372195.5

RAPGEF1-203, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 1 (best) BASIC

Gene RAPGEF1, Length 6,256 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-203ENST00000372195 TSPY4P0CV99 314 aa31.75■■■□□ 2.67
RAPGEF1-203ENST00000372195 TSPY10P0CW01 314 aa31.75■■■□□ 2.67
RAPGEF1-203ENST00000372195 EIF4G2P78344 907 aaKnown RBP eCLIP31.75■■■□□ 2.679e-7■■■■■ 46.8
RAPGEF1-203ENST00000372195 A0A0G2JS52 829 aa31.73■■■□□ 2.67
RAPGEF1-203ENST00000372195 CLIP1P30622 1438 aa31.71■■■□□ 2.67
RAPGEF1-203ENST00000372195 TPRNQ4KMQ1 711 aa31.69■■■□□ 2.66
RAPGEF1-203ENST00000372195 RGL3Q3MIN7 710 aa31.69■■■□□ 2.66
RAPGEF1-203ENST00000372195 SUPT16HQ9Y5B9 1047 aaKnown RBP31.68■■■□□ 2.66
RAPGEF1-203ENST00000372195 MYH16Q9H6N6 1097 aa31.67■■■□□ 2.66
RAPGEF1-203ENST00000372195 C14orf37Q86TY3 774 aa31.61■■■□□ 2.65
RAPGEF1-203ENST00000372195 ZCCHC6Q5VYS8 1495 aaKnown RBP31.6■■■□□ 2.65
RAPGEF1-203ENST00000372195 KCNH8Q96L42 1107 aa31.59■■■□□ 2.65
RAPGEF1-203ENST00000372195 RTN4Q9NQC3 1192 aaKnown RBP31.59■■■□□ 2.65
RAPGEF1-203ENST00000372195 ANP32EQ9BTT0 268 aa31.56■■■□□ 2.64
RAPGEF1-203ENST00000372195 NCLP19338 710 aaKnown RBP31.55■■■□□ 2.64
RAPGEF1-203ENST00000372195 CHMP7Q8WUX9 453 aaPredicted RBP31.54■■■□□ 2.64
RAPGEF1-203ENST00000372195 DDRGK1Q96HY6 314 aa31.52■■■□□ 2.64
RAPGEF1-203ENST00000372195 BECN1Q14457 450 aa31.5■■■□□ 2.63
RAPGEF1-203ENST00000372195 LAS1LQ9Y4W2 734 aaKnown RBP31.5■■■□□ 2.63
RAPGEF1-203ENST00000372195 CEP162Q5TB80 1403 aa31.49■■■□□ 2.63
RAPGEF1-203ENST00000372195 NEUROD2Q15784 382 aa31.48■■■□□ 2.63
RAPGEF1-203ENST00000372195 PPM1GO15355 546 aaPredicted RBP31.47■■■□□ 2.63
RAPGEF1-203ENST00000372195 TRIM44Q96DX7 344 aaPredicted RBP31.45■■■□□ 2.63
RAPGEF1-203ENST00000372195 SIN3AQ96ST3 1273 aa31.45■■■□□ 2.62
RAPGEF1-203ENST00000372195 PPP1R15AO75807 674 aaPredicted RBP31.39■■■□□ 2.61
RAPGEF1-203ENST00000372195 RGS3P49796 1198 aa31.35■■■□□ 2.61
RAPGEF1-203ENST00000372195 GOLGA3Q08378 1498 aa31.34■■■□□ 2.61
RAPGEF1-203ENST00000372195 TNNT2P45379 298 aaPredicted RBP31.34■■■□□ 2.61
RAPGEF1-203ENST00000372195 CARD11Q9BXL7 1154 aa31.34■■■□□ 2.61
RAPGEF1-203ENST00000372195 KNSTRNQ9Y448 316 aa31.32■■■□□ 2.6
RAPGEF1-203ENST00000372195 FTSJ3Q8IY81 847 aaKnown RBP31.31■■■□□ 2.6
RAPGEF1-203ENST00000372195 TAOK2Q9UL54 1235 aa31.31■■■□□ 2.6
RAPGEF1-203ENST00000372195 CC2D1BQ5T0F9 858 aaKnown RBP31.3■■■□□ 2.6
RAPGEF1-203ENST00000372195 FRAT1Q92837 279 aaPredicted RBP31.27■■■□□ 2.6
RAPGEF1-203ENST00000372195 B4GALNT3Q6L9W6 998 aa31.26■■■□□ 2.59
RAPGEF1-203ENST00000372195 GOLGA6L22H0YM25 854 aa31.26■■■□□ 2.59
RAPGEF1-203ENST00000372195 PTMAP06454 111 aaKnown RBP31.25■■■□□ 2.59
RAPGEF1-203ENST00000372195 CCDC180Q9P1Z9 1646 aa31.24■■■□□ 2.59
RAPGEF1-203ENST00000372195 CFAP53Q96M91 514 aa31.22■■■□□ 2.59
RAPGEF1-203ENST00000372195 CDK11BP21127 795 aaKnown RBP31.21■■■□□ 2.59
RAPGEF1-203ENST00000372195 PLEKHD1A6NEE1 506 aa31.21■■■□□ 2.59
RAPGEF1-203ENST00000372195 RSF1Q96T23 1441 aaPredicted RBP31.21■■■□□ 2.59
RAPGEF1-203ENST00000372195 NAP1L5Q96NT1 182 aaPredicted RBP31.21■■■□□ 2.59
RAPGEF1-203ENST00000372195 DNTTIP2Q5QJE6 756 aaKnown RBP31.18■■■□□ 2.58
RAPGEF1-203ENST00000372195 TULP1O00294 542 aaPredicted RBP31.17■■■□□ 2.58
RAPGEF1-203ENST00000372195 PPP4R2Q9NY27 417 aa31.16■■■□□ 2.58
RAPGEF1-203ENST00000372195 CFDP1Q9UEE9 299 aaPredicted RBP31.16■■■□□ 2.58
RAPGEF1-203ENST00000372195 NOP58Q9Y2X3 529 aaKnown RBP31.15■■■□□ 2.58
RAPGEF1-203ENST00000372195 CASC1Q6TDU7 716 aa31.12■■■□□ 2.57
RAPGEF1-203ENST00000372195 PLCB2Q00722 1185 aa31.11■■■□□ 2.57
RAPGEF1-203ENST00000372195 SPRYD3Q8NCJ5 442 aa31.08■■■□□ 2.57
RAPGEF1-203ENST00000372195 MAPK8IP3Q9UPT6 1336 aa31.07■■■□□ 2.56
RAPGEF1-203ENST00000372195 ARID4BQ4LE39 1312 aaPredicted RBP31.05■■■□□ 2.56
RAPGEF1-203ENST00000372195 ZRSR1Q15695 479 aaKnown RBP31.03■■■□□ 2.56
RAPGEF1-203ENST00000372195 U2SURPO15042 1029 aaKnown RBP31.02■■■□□ 2.56
RAPGEF1-203ENST00000372195 HAP1P54257 671 aaPredicted RBP31.02■■■□□ 2.56
RAPGEF1-203ENST00000372195 WRNQ14191 1432 aaPredicted RBP eCLIP31.02■■■□□ 2.563e-6■■■■■ 61.3
RAPGEF1-203ENST00000372195 CDCA8Q53HL2 280 aa31■■■□□ 2.55
RAPGEF1-203ENST00000372195 HSP90AB1P08238 724 aaKnown RBP31■■■□□ 2.55
RAPGEF1-203ENST00000372195 LMOD2Q6P5Q4 547 aa30.98■■■□□ 2.55
RAPGEF1-203ENST00000372195 POGKQ9P215 609 aa30.95■■■□□ 2.55
RAPGEF1-203ENST00000372195 TNIKQ9UKE5 1360 aa30.95■■■□□ 2.54
RAPGEF1-203ENST00000372195 ERICH6BQ5W0A0 696 aa30.94■■■□□ 2.54
RAPGEF1-203ENST00000372195 EEA1Q15075 1411 aa30.91■■■□□ 2.54
RAPGEF1-203ENST00000372195 DCAF11Q8TEB1 546 aa30.91■■■□□ 2.54
RAPGEF1-203ENST00000372195 DEKP35659 375 aaKnown RBP30.9■■■□□ 2.54
RAPGEF1-203ENST00000372195 SOX12O15370 315 aa30.89■■■□□ 2.53
RAPGEF1-203ENST00000372195 NAP1L2Q9ULW6 460 aaPredicted RBP30.88■■■□□ 2.53
RAPGEF1-203ENST00000372195 NUDCQ9Y266 331 aa30.88■■■□□ 2.53
RAPGEF1-203ENST00000372195 OS9Q13438 667 aaPredicted RBP30.88■■■□□ 2.53
RAPGEF1-203ENST00000372195 CEP164Q9UPV0 1460 aa30.88■■■□□ 2.53
RAPGEF1-203ENST00000372195 KIF27Q86VH2 1401 aa30.85■■■□□ 2.53
RAPGEF1-203ENST00000372195 FOXD1Q16676 465 aa30.83■■■□□ 2.53
RAPGEF1-203ENST00000372195 SAFB2Q14151 953 aaKnown RBP eCLIP30.83■■■□□ 2.53
RAPGEF1-203ENST00000372195 RBM19Q9Y4C8 960 aaKnown RBP30.79■■■□□ 2.52
RAPGEF1-203ENST00000372195 BAZ1BQ9UIG0 1483 aaKnown RBP30.78■■■□□ 2.52
RAPGEF1-203ENST00000372195 HSPA5P11021 654 aaKnown RBP30.77■■■□□ 2.52
RAPGEF1-203ENST00000372195 FGD1P98174 961 aa30.76■■■□□ 2.51
RAPGEF1-203ENST00000372195 KCNJ4P48050 445 aa30.76■■■□□ 2.51
RAPGEF1-203ENST00000372195 EIF4G1Q04637 1599 aaKnown RBP30.75■■■□□ 2.51
RAPGEF1-203ENST00000372195 CCNB3Q8WWL7 1395 aa30.75■■■□□ 2.51
RAPGEF1-203ENST00000372195 TMF1P82094 1093 aa30.73■■■□□ 2.51
RAPGEF1-203ENST00000372195 HSCBQ8IWL3 235 aa30.73■■■□□ 2.51
RAPGEF1-203ENST00000372195 AMER1Q5JTC6 1135 aaPredicted RBP30.72■■■□□ 2.51
RAPGEF1-203ENST00000372195 APBB1O00213 710 aa30.72■■■□□ 2.51
RAPGEF1-203ENST00000372195 RB1CC1Q8TDY2 1594 aa30.68■■■□□ 2.5
RAPGEF1-203ENST00000372195 SOGA1O94964 1423 aa30.67■■■□□ 2.5
RAPGEF1-203ENST00000372195 NPHP1O15259 732 aa30.65■■■□□ 2.5
RAPGEF1-203ENST00000372195 SRPK2P78362 688 aaKnown RBP30.65■■■□□ 2.5
RAPGEF1-203ENST00000372195 MORC1Q86VD1 984 aa30.64■■■□□ 2.49
RAPGEF1-203ENST00000372195 MLECQ14165 292 aa30.63■■■□□ 2.49
RAPGEF1-203ENST00000372195 ZBTB4Q9P1Z0 1013 aaPredicted RBP30.6■■■□□ 2.49
RAPGEF1-203ENST00000372195 ARID3AQ99856 593 aa30.6■■■□□ 2.49
RAPGEF1-203ENST00000372195 STK26Q9P289 416 aa30.59■■■□□ 2.49
RAPGEF1-203ENST00000372195 GZF1Q9H116 711 aaPredicted RBP30.58■■■□□ 2.49
RAPGEF1-203ENST00000372195 KANK4Q5T7N3 995 aaPredicted RBP30.58■■■□□ 2.49
RAPGEF1-203ENST00000372195 MS4A1P11836 297 aa30.57■■■□□ 2.48
RAPGEF1-203ENST00000372195 GOLGA6L4A6NEF3 574 aa30.55■■■□□ 2.48
RAPGEF1-203ENST00000372195 CCER2I3L3R5 266 aa30.54■■■□□ 2.48
RAPGEF1-203ENST00000372195 GOLGA6L6A8MZA4 724 aa30.53■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms