RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 GABBR2O75899 941 aa7.05□□□□□ -1.28
MCF2-202ENST00000370573 PHF12Q96QT6 1004 aa7.05□□□□□ -1.28
MCF2-202ENST00000370573 NUBP1P53384 320 aa7.03□□□□□ -1.28
MCF2-202ENST00000370573 ZNF579Q8NAF0 562 aaKnown RBP7.01□□□□□ -1.29
MCF2-202ENST00000370573 AMER1Q5JTC6 1135 aaPredicted RBP7□□□□□ -1.29
MCF2-202ENST00000370573 DCAF8Q5TAQ9 597 aa6.99□□□□□ -1.29
MCF2-202ENST00000370573 CCDC61Q9Y6R9 512 aa6.99□□□□□ -1.29
MCF2-202ENST00000370573 GALR2O43603 387 aaPredicted RBP6.98□□□□□ -1.29
MCF2-202ENST00000370573 FAM212AQ96EL1 285 aa6.97□□□□□ -1.29
MCF2-202ENST00000370573 SPOCK2Q92563 424 aa6.95□□□□□ -1.3
MCF2-202ENST00000370573 MAP3K13O43283 966 aa6.94□□□□□ -1.3
MCF2-202ENST00000370573 PYGBP11216 843 aa6.94□□□□□ -1.3
MCF2-202ENST00000370573 MS4A3Q96HJ5 214 aa6.94□□□□□ -1.3
MCF2-202ENST00000370573 KIF12Q96FN5 646 aa6.93□□□□□ -1.3
MCF2-202ENST00000370573 CIZ1Q9ULV3 898 aaPredicted RBP6.93□□□□□ -1.3
MCF2-202ENST00000370573 DCBLD2Q96PD2 775 aa6.91□□□□□ -1.3
MCF2-202ENST00000370573 POTEIP0CG38 1075 aa6.91□□□□□ -1.3
MCF2-202ENST00000370573 CLCN6P51797 869 aa6.9□□□□□ -1.31
MCF2-202ENST00000370573 TRPC6Q9Y210 931 aa6.9□□□□□ -1.31
MCF2-202ENST00000370573 PCDHB13Q9Y5F0 798 aa6.89□□□□□ -1.31
MCF2-202ENST00000370573 GSE1Q14687 1217 aa6.88□□□□□ -1.31
MCF2-202ENST00000370573 IFNL1Q8IU54 200 aa6.87□□□□□ -1.31
MCF2-202ENST00000370573 PCDHB8Q9UN66 801 aa6.85□□□□□ -1.31
MCF2-202ENST00000370573 ABCC9O60706 1549 aa6.84□□□□□ -1.31
MCF2-202ENST00000370573 PELP1Q8IZL8 1130 aaKnown RBP6.83□□□□□ -1.32
MCF2-202ENST00000370573 ZCCHC6Q5VYS8 1495 aaKnown RBP6.82□□□□□ -1.32
MCF2-202ENST00000370573 BMP2KQ9NSY1 1161 aaPredicted RBP6.82□□□□□ -1.32
MCF2-202ENST00000370573 ATMINO43313 823 aaPredicted RBP6.81□□□□□ -1.32
MCF2-202ENST00000370573 ATN1P54259 1190 aaPredicted RBP6.81□□□□□ -1.32
MCF2-202ENST00000370573 SGIP1Q9BQI5 828 aa6.81□□□□□ -1.32
MCF2-202ENST00000370573 ASTLQ6HA08 431 aaPredicted RBP6.79□□□□□ -1.32
MCF2-202ENST00000370573 TTLL13PA6NNM8 815 aa6.79□□□□□ -1.32
MCF2-202ENST00000370573 TMEM106CQ9BVX2 250 aa6.78□□□□□ -1.32
MCF2-202ENST00000370573 CHRM1P11229 460 aaPredicted RBP6.78□□□□□ -1.32
MCF2-202ENST00000370573 DCAF8L2P0C7V8 631 aa6.77□□□□□ -1.33
MCF2-202ENST00000370573 TIE1P35590 1138 aa6.77□□□□□ -1.33
MCF2-202ENST00000370573 ZNF467Q7Z7K2 595 aaPredicted RBP6.76□□□□□ -1.33
MCF2-202ENST00000370573 TRIM35Q9UPQ4 493 aa6.76□□□□□ -1.33
MCF2-202ENST00000370573 PKD2Q13563 968 aa6.75□□□□□ -1.33
MCF2-202ENST00000370573 ECM2O94769 699 aaPredicted RBP6.74□□□□□ -1.33
MCF2-202ENST00000370573 RNF25Q96BH1 459 aaPredicted RBP6.74□□□□□ -1.33
MCF2-202ENST00000370573 METRNQ9UJH8 293 aa6.74□□□□□ -1.33
MCF2-202ENST00000370573 DCAF1Q9Y4B6 1507 aa6.73□□□□□ -1.33
MCF2-202ENST00000370573 PSEN1P49768 467 aa6.73□□□□□ -1.33
MCF2-202ENST00000370573 LHX8Q68G74 356 aa6.72□□□□□ -1.33
MCF2-202ENST00000370573 TRIM41Q8WV44 630 aa6.72□□□□□ -1.33
MCF2-202ENST00000370573 POTEB2H3BUK9 544 aa6.71□□□□□ -1.33
MCF2-202ENST00000370573 SLC39A7Q92504 469 aa6.71□□□□□ -1.33
MCF2-202ENST00000370573 C7P10643 843 aa6.7□□□□□ -1.34
MCF2-202ENST00000370573 PDAP1Q13442 181 aaKnown RBP6.7□□□□□ -1.34
MCF2-202ENST00000370573 RIOK3O14730 519 aaKnown RBP6.69□□□□□ -1.34
MCF2-202ENST00000370573 COLQQ9Y215 455 aaPredicted RBP6.69□□□□□ -1.34
MCF2-202ENST00000370573 RGL2O15211 777 aa6.69□□□□□ -1.34
MCF2-202ENST00000370573 SEC24BO95487 1268 aa6.69□□□□□ -1.34
MCF2-202ENST00000370573 POTEFA5A3E0 1075 aa6.68□□□□□ -1.34
MCF2-202ENST00000370573 CABP2Q9NPB3 220 aa6.68□□□□□ -1.34
MCF2-202ENST00000370573 MYO15BQ96JP2 1530 aa6.68□□□□□ -1.34
MCF2-202ENST00000370573 GOLGA2Q08379 1002 aa6.67□□□□□ -1.34
MCF2-202ENST00000370573 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.66□□□□□ -1.34
MCF2-202ENST00000370573 ZFP91Q96JP5 570 aaPredicted RBP6.66□□□□□ -1.34
MCF2-202ENST00000370573 NACADO15069 1562 aa6.66□□□□□ -1.34
MCF2-202ENST00000370573 MKRN3Q13064 507 aaKnown RBP6.65□□□□□ -1.34
MCF2-202ENST00000370573 POTEJP0CG39 1038 aa6.64□□□□□ -1.35
MCF2-202ENST00000370573 VGFO15240 615 aaPredicted RBP6.64□□□□□ -1.35
MCF2-202ENST00000370573 IRX5P78411 483 aaPredicted RBP6.63□□□□□ -1.35
MCF2-202ENST00000370573 IER5LQ5T953 404 aa6.63□□□□□ -1.35
MCF2-202ENST00000370573 PLCG2P16885 1265 aa6.63□□□□□ -1.35
MCF2-202ENST00000370573 RB1CC1Q8TDY2 1594 aa6.62□□□□□ -1.35
MCF2-202ENST00000370573 EFCAB3Q8N7B9 438 aa6.62□□□□□ -1.35
MCF2-202ENST00000370573 BCL11BQ9C0K0 894 aaPredicted RBP6.62□□□□□ -1.35
MCF2-202ENST00000370573 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.62□□□□□ -1.35
MCF2-202ENST00000370573 STK25O00506 426 aa6.61□□□□□ -1.35
MCF2-202ENST00000370573 OTUD5Q96G74 571 aa6.61□□□□□ -1.35
MCF2-202ENST00000370573 OCEL1Q9H607 264 aa6.61□□□□□ -1.35
MCF2-202ENST00000370573 STK24Q9Y6E0 443 aa6.61□□□□□ -1.35
MCF2-202ENST00000370573 SHROOM4Q9ULL8 1493 aa6.6□□□□□ -1.35
MCF2-202ENST00000370573 DPY19L2Q6NUT2 758 aa6.59□□□□□ -1.36
MCF2-202ENST00000370573 PDCD7Q8N8D1 485 aaKnown RBP6.58□□□□□ -1.36
MCF2-202ENST00000370573 TAOK2Q9UL54 1235 aa6.57□□□□□ -1.36
MCF2-202ENST00000370573 CHGAP10645 457 aaKnown RBP6.55□□□□□ -1.36
MCF2-202ENST00000370573 PHF8Q9UPP1 1060 aa6.55□□□□□ -1.36
MCF2-202ENST00000370573 SCRIBQ14160 1630 aa6.55□□□□□ -1.36
MCF2-202ENST00000370573 SCUBE2Q9NQ36 999 aa6.55□□□□□ -1.36
MCF2-202ENST00000370573 MAMSTRQ6ZN01 415 aa6.53□□□□□ -1.36
MCF2-202ENST00000370573 ILDR1Q86SU0 546 aaPredicted RBP6.52□□□□□ -1.37
MCF2-202ENST00000370573 SOX12O15370 315 aa6.51□□□□□ -1.37
MCF2-202ENST00000370573 MS4A4AQ96JQ5 239 aa6.51□□□□□ -1.37
MCF2-202ENST00000370573 PRKCSHP14314 528 aaPredicted RBP6.51□□□□□ -1.37
MCF2-202ENST00000370573 MFRPQ9BY79 579 aa6.51□□□□□ -1.37
MCF2-202ENST00000370573 SLAIN1Q8ND83 568 aa6.5□□□□□ -1.37
MCF2-202ENST00000370573 UNC13AQ9UPW8 1703 aa6.5□□□□□ -1.37
MCF2-202ENST00000370573 L3MBTL3Q96JM7 780 aaPredicted RBP6.49□□□□□ -1.37
MCF2-202ENST00000370573 PLCB2Q00722 1185 aa6.49□□□□□ -1.37
MCF2-202ENST00000370573 HS6ST3Q8IZP7 471 aa6.49□□□□□ -1.37
MCF2-202ENST00000370573 BOLA1Q9Y3E2 137 aa6.49□□□□□ -1.37
MCF2-202ENST00000370573 G3V3G9 751 aa6.48□□□□□ -1.37
MCF2-202ENST00000370573 C3orf67Q6ZVT6 689 aa6.48□□□□□ -1.37
MCF2-202ENST00000370573 NLRP6P59044 892 aa6.48□□□□□ -1.37
MCF2-202ENST00000370573 FBXO22Q8NEZ5 403 aa6.47□□□□□ -1.37
MCF2-202ENST00000370573 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms