RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 CEP164Q9UPV0 1460 aa15.87■□□□□ 0.13
SYNE1-204ENST00000367248 RRP7BPQ9NSQ0 103 aa15.86■□□□□ 0.13
SYNE1-204ENST00000367248 SALL2Q9Y467 1007 aaPredicted RBP15.86■□□□□ 0.13
SYNE1-204ENST00000367248 CFDP1Q9UEE9 299 aaPredicted RBP15.85■□□□□ 0.13
SYNE1-204ENST00000367248 LMOD2Q6P5Q4 547 aa15.82■□□□□ 0.12
SYNE1-204ENST00000367248 CARMIL1Q5VZK9 1371 aa15.8■□□□□ 0.12
SYNE1-204ENST00000367248 MROH2BQ7Z745 1585 aa15.79■□□□□ 0.12
SYNE1-204ENST00000367248 CUX2O14529 1486 aa15.79■□□□□ 0.12
SYNE1-204ENST00000367248 RGL3Q3MIN7 710 aa15.79■□□□□ 0.12
SYNE1-204ENST00000367248 DDX10Q13206 875 aaKnown RBP15.77■□□□□ 0.12
SYNE1-204ENST00000367248 PDS5BQ9NTI5 1447 aa15.76■□□□□ 0.11
SYNE1-204ENST00000367248 MYO15BQ96JP2 1530 aa15.75■□□□□ 0.11
SYNE1-204ENST00000367248 ACIN1Q9UKV3 1341 aaKnown RBP15.75■□□□□ 0.11
SYNE1-204ENST00000367248 ARXQ96QS3 562 aa15.74■□□□□ 0.11
SYNE1-204ENST00000367248 CCDC88BA6NC98 1476 aa15.73■□□□□ 0.11
SYNE1-204ENST00000367248 GTF3C3Q9Y5Q9 886 aa15.72■□□□□ 0.11
SYNE1-204ENST00000367248 NPM2Q86SE8 214 aaKnown RBP15.72■□□□□ 0.11
SYNE1-204ENST00000367248 SMARCA2P51531 1590 aa15.72■□□□□ 0.11
SYNE1-204ENST00000367248 SOGA1O94964 1423 aa15.72■□□□□ 0.11
SYNE1-204ENST00000367248 TMC1Q8TDI8 760 aa15.71■□□□□ 0.1
SYNE1-204ENST00000367248 HIRIP3Q9BW71 556 aaPredicted RBP15.68■□□□□ 0.1
SYNE1-204ENST00000367248 TDRD9Q8NDG6 1382 aaKnown RBP15.68■□□□□ 0.1
SYNE1-204ENST00000367248 CADPSQ9ULU8 1353 aa15.67■□□□□ 0.1
SYNE1-204ENST00000367248 FHAD1B1AJZ9 1412 aa15.66■□□□□ 0.1
SYNE1-204ENST00000367248 EIF4G2P78344 907 aaKnown RBP eCLIP15.66■□□□□ 0.1
SYNE1-204ENST00000367248 FAM9BQ8IZU0 186 aa15.65■□□□□ 0.1
SYNE1-204ENST00000367248 HNRNPUQ00839 825 aaKnown RBP eCLIP15.65■□□□□ 0.1
SYNE1-204ENST00000367248 CCNB3Q8WWL7 1395 aa15.65■□□□□ 0.1
SYNE1-204ENST00000367248 PPM1GO15355 546 aaPredicted RBP15.65■□□□□ 0.1
SYNE1-204ENST00000367248 RTL5Q5HYW3 569 aaPredicted RBP15.63■□□□□ 0.09
SYNE1-204ENST00000367248 SENP3-EIF4A1A0A087X0R7 540 aa15.6■□□□□ 0.09
SYNE1-204ENST00000367248 MRS2Q9HD23 443 aa15.59■□□□□ 0.09
SYNE1-204ENST00000367248 EIF4G1Q04637 1599 aaKnown RBP15.59■□□□□ 0.09
SYNE1-204ENST00000367248 ATAD2BQ9ULI0 1458 aa15.57■□□□□ 0.08
SYNE1-204ENST00000367248 WDR43Q15061 677 aaKnown RBP eCLIP15.57■□□□□ 0.08
SYNE1-204ENST00000367248 CARMIL2Q6F5E8 1435 aa15.56■□□□□ 0.08
SYNE1-204ENST00000367248 SOX12O15370 315 aa15.55■□□□□ 0.08
SYNE1-204ENST00000367248 GGT6Q6P531 493 aa15.54■□□□□ 0.08
SYNE1-204ENST00000367248 POGKQ9P215 609 aa15.53■□□□□ 0.08
SYNE1-204ENST00000367248 TOP2AP11388 1531 aaKnown RBP15.52■□□□□ 0.07
SYNE1-204ENST00000367248 NPHP1O15259 732 aa15.51■□□□□ 0.07
SYNE1-204ENST00000367248 CDCA8Q53HL2 280 aa15.5■□□□□ 0.07
SYNE1-204ENST00000367248 CARD11Q9BXL7 1154 aa15.5■□□□□ 0.07
SYNE1-204ENST00000367248 VPS8Q8N3P4 1428 aa15.49■□□□□ 0.07
SYNE1-204ENST00000367248 SAFB2Q14151 953 aaKnown RBP eCLIP15.49■□□□□ 0.07
SYNE1-204ENST00000367248 ABCC8Q09428 1581 aa15.49■□□□□ 0.07
SYNE1-204ENST00000367248 AEBP2Q6ZN18 517 aaPredicted RBP15.48■□□□□ 0.07
SYNE1-204ENST00000367248 SIN3AQ96ST3 1273 aa15.47■□□□□ 0.07
SYNE1-204ENST00000367248 CYB5RLQ6IPT4 315 aa15.47■□□□□ 0.07
SYNE1-204ENST00000367248 TNNT2P45379 298 aaPredicted RBP15.47■□□□□ 0.07
SYNE1-204ENST00000367248 FKBP8Q14318 412 aa15.46■□□□□ 0.07
SYNE1-204ENST00000367248 EFCAB2Q5VUJ9 269 aa15.44■□□□□ 0.06
SYNE1-204ENST00000367248 KANK4Q5T7N3 995 aaPredicted RBP15.44■□□□□ 0.06
SYNE1-204ENST00000367248 FMN1Q68DA7 1419 aa15.44■□□□□ 0.06
SYNE1-204ENST00000367248 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.44■□□□□ 0.06
SYNE1-204ENST00000367248 MIER1Q8N108 512 aa15.42■□□□□ 0.06
SYNE1-204ENST00000367248 KANK1Q14678 1352 aa15.42■□□□□ 0.06
SYNE1-204ENST00000367248 KNSTRNQ9Y448 316 aa15.41■□□□□ 0.06
SYNE1-204ENST00000367248 CFAP53Q96M91 514 aa15.39■□□□□ 0.05
SYNE1-204ENST00000367248 STK26Q9P289 416 aa15.39■□□□□ 0.05
SYNE1-204ENST00000367248 LAS1LQ9Y4W2 734 aaKnown RBP15.39■□□□□ 0.05
SYNE1-204ENST00000367248 JPH4Q96JJ6 628 aa15.39■□□□□ 0.05
SYNE1-204ENST00000367248 RAPGEF2Q9Y4G8 1499 aa15.38■□□□□ 0.05
SYNE1-204ENST00000367248 NEUROD2Q15784 382 aa15.38■□□□□ 0.05
SYNE1-204ENST00000367248 HSP90AA1P07900 732 aaKnown RBP15.38■□□□□ 0.05
SYNE1-204ENST00000367248 ARHGAP35Q9NRY4 1499 aa15.37■□□□□ 0.05
SYNE1-204ENST00000367248 TIMELESSQ9UNS1 1208 aa15.37■□□□□ 0.05
SYNE1-204ENST00000367248 CCDC9Q9Y3X0 531 aaKnown RBP15.37■□□□□ 0.05
SYNE1-204ENST00000367248 ANP32AP39687 249 aaKnown RBP15.36■□□□□ 0.05
SYNE1-204ENST00000367248 DCAF11Q8TEB1 546 aa15.36■□□□□ 0.05
SYNE1-204ENST00000367248 FANCD2Q9BXW9 1451 aa15.35■□□□□ 0.05
SYNE1-204ENST00000367248 WIZO95785 1651 aa15.35■□□□□ 0.05
SYNE1-204ENST00000367248 PAK3O75914 559 aaPredicted RBP15.34■□□□□ 0.05
SYNE1-204ENST00000367248 HDGFP51858 240 aaKnown RBP15.34■□□□□ 0.05
SYNE1-204ENST00000367248 CCDC136Q96JN2 1154 aa15.34■□□□□ 0.05
SYNE1-204ENST00000367248 PKD2Q13563 968 aa15.34■□□□□ 0.05
SYNE1-204ENST00000367248 FHOD3Q2V2M9 1422 aa15.32■□□□□ 0.04
SYNE1-204ENST00000367248 NUTM2DQ5VT03 806 aaPredicted RBP15.32■□□□□ 0.04
SYNE1-204ENST00000367248 SMARCA4P51532 1647 aa15.32■□□□□ 0.04
SYNE1-204ENST00000367248 SETD5Q9C0A6 1442 aa15.32■□□□□ 0.04
SYNE1-204ENST00000367248 SRPK2P78362 688 aaKnown RBP15.3■□□□□ 0.04
SYNE1-204ENST00000367248 UPF2Q9HAU5 1272 aaKnown RBP15.29■□□□□ 0.04
SYNE1-204ENST00000367248 ANKRD30AQ9BXX3 1397 aa15.28■□□□□ 0.04
SYNE1-204ENST00000367248 TULP1O00294 542 aaPredicted RBP15.28■□□□□ 0.04
SYNE1-204ENST00000367248 NCAPD3P42695 1498 aa15.27■□□□□ 0.03
SYNE1-204ENST00000367248 TAOK2Q9UL54 1235 aa15.27■□□□□ 0.03
SYNE1-204ENST00000367248 TMF1P82094 1093 aa15.26■□□□□ 0.03
SYNE1-204ENST00000367248 NUDCQ9Y266 331 aa15.26■□□□□ 0.03
SYNE1-204ENST00000367248 NUP155O75694 1391 aa15.26■□□□□ 0.03
SYNE1-204ENST00000367248 IRX6P78412 446 aaPredicted RBP15.26■□□□□ 0.03
SYNE1-204ENST00000367248 U2SURPO15042 1029 aaKnown RBP15.26■□□□□ 0.03
SYNE1-204ENST00000367248 RSPH4AQ5TD94 716 aa15.26■□□□□ 0.03
SYNE1-204ENST00000367248 MYH16Q9H6N6 1097 aa15.25■□□□□ 0.03
SYNE1-204ENST00000367248 NUTM2FA1L443 756 aa15.25■□□□□ 0.03
SYNE1-204ENST00000367248 KIF3BO15066 747 aa15.24■□□□□ 0.03
SYNE1-204ENST00000367248 CSB-PGBD3P0DP91 1061 aa15.23■□□□□ 0.03
SYNE1-204ENST00000367248 CC2D1BQ5T0F9 858 aaKnown RBP15.23■□□□□ 0.03
SYNE1-204ENST00000367248 ZNF330Q9Y3S2 320 aaPredicted RBP15.23■□□□□ 0.03
SYNE1-204ENST00000367248 MAPK8IP3Q9UPT6 1336 aa15.23■□□□□ 0.03
SYNE1-204ENST00000367248 PTPRGP23470 1445 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms