RNA–Protein interactions for RNA: ENST00000366813.1

H3F3A-201, Transcript of H3 histone family member 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene H3F3A, Length 1,308 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3A-201ENST00000366813 CCDC61Q9Y6R9 512 aa18.46■□□□□ 0.55
H3F3A-201ENST00000366813 VASPP50552 380 aaPredicted RBP18.43■□□□□ 0.54
H3F3A-201ENST00000366813 KLHL34Q8N239 644 aa18.42■□□□□ 0.54
H3F3A-201ENST00000366813 NUBP1P53384 320 aa18.4■□□□□ 0.54
H3F3A-201ENST00000366813 MS4A3Q96HJ5 214 aa18.38■□□□□ 0.53
H3F3A-201ENST00000366813 NISCHQ9Y2I1 1504 aa18.37■□□□□ 0.53
H3F3A-201ENST00000366813 FAM212AQ96EL1 285 aa18.35■□□□□ 0.53
H3F3A-201ENST00000366813 KIF12Q96FN5 646 aa18.35■□□□□ 0.53
H3F3A-201ENST00000366813 DCAF8Q5TAQ9 597 aa18.3■□□□□ 0.52
H3F3A-201ENST00000366813 LHX8Q68G74 356 aa18.28■□□□□ 0.52
H3F3A-201ENST00000366813 MAP3K13O43283 966 aa18.27■□□□□ 0.52
H3F3A-201ENST00000366813 PCDHB13Q9Y5F0 798 aa18.18■□□□□ 0.5
H3F3A-201ENST00000366813 ATMINO43313 823 aaPredicted RBP18.15■□□□□ 0.5
H3F3A-201ENST00000366813 ASTLQ6HA08 431 aaPredicted RBP18.15■□□□□ 0.5
H3F3A-201ENST00000366813 SGIP1Q9BQI5 828 aa18.15■□□□□ 0.5
H3F3A-201ENST00000366813 PELP1Q8IZL8 1130 aaKnown RBP18.12■□□□□ 0.49
H3F3A-201ENST00000366813 GSE1Q14687 1217 aa18.11■□□□□ 0.49
H3F3A-201ENST00000366813 IFNLR1Q8IU57 520 aaPredicted RBP18.11■□□□□ 0.49
H3F3A-201ENST00000366813 PYGBP11216 843 aa18.09■□□□□ 0.49
H3F3A-201ENST00000366813 SPOCK2Q92563 424 aa18.08■□□□□ 0.49
H3F3A-201ENST00000366813 TRPC6Q9Y210 931 aa18.08■□□□□ 0.49
H3F3A-201ENST00000366813 TIE1P35590 1138 aa18.06■□□□□ 0.48
H3F3A-201ENST00000366813 BMP2KQ9NSY1 1161 aaPredicted RBP18.06■□□□□ 0.48
H3F3A-201ENST00000366813 ATN1P54259 1190 aaPredicted RBP18.05■□□□□ 0.48
H3F3A-201ENST00000366813 SLC39A7Q92504 469 aa18.05■□□□□ 0.48
H3F3A-201ENST00000366813 C7P10643 843 aa18.03■□□□□ 0.48
H3F3A-201ENST00000366813 IFNL1Q8IU54 200 aa18.03■□□□□ 0.48
H3F3A-201ENST00000366813 METRNQ9UJH8 293 aa18■□□□□ 0.47
H3F3A-201ENST00000366813 CIZ1Q9ULV3 898 aaPredicted RBP17.98■□□□□ 0.47
H3F3A-201ENST00000366813 TTLL13PA6NNM8 815 aa17.97■□□□□ 0.47
H3F3A-201ENST00000366813 TMEM106CQ9BVX2 250 aa17.91■□□□□ 0.46
H3F3A-201ENST00000366813 PCDHB8Q9UN66 801 aa17.9■□□□□ 0.46
H3F3A-201ENST00000366813 POTEB2H3BUK9 544 aa17.88■□□□□ 0.45
H3F3A-201ENST00000366813 TRIM35Q9UPQ4 493 aa17.88■□□□□ 0.45
H3F3A-201ENST00000366813 CHRM1P11229 460 aaPredicted RBP17.86■□□□□ 0.45
H3F3A-201ENST00000366813 ZNF467Q7Z7K2 595 aaPredicted RBP17.84■□□□□ 0.45
H3F3A-201ENST00000366813 SEC24BO95487 1268 aa17.83■□□□□ 0.44
H3F3A-201ENST00000366813 IER5LQ5T953 404 aa17.76■□□□□ 0.43
H3F3A-201ENST00000366813 OTUD5Q96G74 571 aa17.76■□□□□ 0.43
H3F3A-201ENST00000366813 ABCC9O60706 1549 aa17.73■□□□□ 0.43
H3F3A-201ENST00000366813 MAMSTRQ6ZN01 415 aa17.72■□□□□ 0.43
H3F3A-201ENST00000366813 POTEFA5A3E0 1075 aa17.71■□□□□ 0.42
H3F3A-201ENST00000366813 COLQQ9Y215 455 aaPredicted RBP17.71■□□□□ 0.42
H3F3A-201ENST00000366813 TRIM41Q8WV44 630 aa17.69■□□□□ 0.42
H3F3A-201ENST00000366813 PSEN1P49768 467 aa17.67■□□□□ 0.42
H3F3A-201ENST00000366813 POTEJP0CG39 1038 aa17.66■□□□□ 0.42
H3F3A-201ENST00000366813 GOLGA2Q08379 1002 aa17.66■□□□□ 0.42
H3F3A-201ENST00000366813 PLCG2P16885 1265 aa17.65■□□□□ 0.42
H3F3A-201ENST00000366813 SCUBE2Q9NQ36 999 aa17.65■□□□□ 0.42
H3F3A-201ENST00000366813 PDAP1Q13442 181 aaKnown RBP17.62■□□□□ 0.41
H3F3A-201ENST00000366813 MKRN3Q13064 507 aaKnown RBP17.59■□□□□ 0.41
H3F3A-201ENST00000366813 OCEL1Q9H607 264 aa17.57■□□□□ 0.4
H3F3A-201ENST00000366813 IRX5P78411 483 aaPredicted RBP17.56■□□□□ 0.4
H3F3A-201ENST00000366813 CABP2Q9NPB3 220 aa17.46■□□□□ 0.38
H3F3A-201ENST00000366813 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.44■□□□□ 0.38
H3F3A-201ENST00000366813 RIOK3O14730 519 aaKnown RBP17.43■□□□□ 0.38
H3F3A-201ENST00000366813 SLAIN1Q8ND83 568 aa17.35■□□□□ 0.37
H3F3A-201ENST00000366813 PDCD7Q8N8D1 485 aaKnown RBP17.34■□□□□ 0.37
H3F3A-201ENST00000366813 L3MBTL3Q96JM7 780 aaPredicted RBP17.34■□□□□ 0.37
H3F3A-201ENST00000366813 VGFO15240 615 aaPredicted RBP17.33■□□□□ 0.36
H3F3A-201ENST00000366813 ECM2O94769 699 aaPredicted RBP17.33■□□□□ 0.36
H3F3A-201ENST00000366813 RNF25Q96BH1 459 aaPredicted RBP17.33■□□□□ 0.36
H3F3A-201ENST00000366813 FAM163AQ96GL9 167 aaPredicted RBP17.32■□□□□ 0.36
H3F3A-201ENST00000366813 TAOK2Q9UL54 1235 aa17.31■□□□□ 0.36
H3F3A-201ENST00000366813 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.3■□□□□ 0.36
H3F3A-201ENST00000366813 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.28■□□□□ 0.36
H3F3A-201ENST00000366813 ZFP91Q96JP5 570 aaPredicted RBP17.28■□□□□ 0.36
H3F3A-201ENST00000366813 EFCAB3Q8N7B9 438 aa17.26■□□□□ 0.35
H3F3A-201ENST00000366813 G3V3G9 751 aa17.24■□□□□ 0.35
H3F3A-201ENST00000366813 C3orf67Q6ZVT6 689 aa17.23■□□□□ 0.35
H3F3A-201ENST00000366813 PKD2Q13563 968 aa17.21■□□□□ 0.35
H3F3A-201ENST00000366813 DPY19L2Q6NUT2 758 aa17.21■□□□□ 0.35
H3F3A-201ENST00000366813 ILDR1Q86SU0 546 aaPredicted RBP17.21■□□□□ 0.35
H3F3A-201ENST00000366813 POTEMA6NI47 508 aa17.17■□□□□ 0.34
H3F3A-201ENST00000366813 SOX12O15370 315 aa17.16■□□□□ 0.34
H3F3A-201ENST00000366813 POTEGQ6S5H5 508 aa17.15■□□□□ 0.34
H3F3A-201ENST00000366813 BOLA1Q9Y3E2 137 aa17.15■□□□□ 0.34
H3F3A-201ENST00000366813 BCL11BQ9C0K0 894 aaPredicted RBP17.14■□□□□ 0.33
H3F3A-201ENST00000366813 STK24Q9Y6E0 443 aa17.13■□□□□ 0.33
H3F3A-201ENST00000366813 RGL2O15211 777 aa17.12■□□□□ 0.33
H3F3A-201ENST00000366813 STK25O00506 426 aa17.11■□□□□ 0.33
H3F3A-201ENST00000366813 SNPHO15079 494 aa17.08■□□□□ 0.32
H3F3A-201ENST00000366813 PHF8Q9UPP1 1060 aa17.05■□□□□ 0.32
H3F3A-201ENST00000366813 LCE2DQ5TA82 110 aaPredicted RBP17.04■□□□□ 0.32
H3F3A-201ENST00000366813 NLRP6P59044 892 aa17■□□□□ 0.31
H3F3A-201ENST00000366813 ST18O60284 1047 aa16.99■□□□□ 0.31
H3F3A-201ENST00000366813 MS4A4AQ96JQ5 239 aa16.96■□□□□ 0.3
H3F3A-201ENST00000366813 TMEM121BQ9BXQ6 578 aaPredicted RBP16.96■□□□□ 0.3
H3F3A-201ENST00000366813 MICALL2Q8IY33 904 aa16.92■□□□□ 0.3
H3F3A-201ENST00000366813 PCDH10Q9P2E7 1040 aa16.91■□□□□ 0.3
H3F3A-201ENST00000366813 MFRPQ9BY79 579 aa16.88■□□□□ 0.29
H3F3A-201ENST00000366813 FBXO22Q8NEZ5 403 aa16.87■□□□□ 0.29
H3F3A-201ENST00000366813 PLSCR2Q9NRY7 297 aa16.85■□□□□ 0.29
H3F3A-201ENST00000366813 AMER1Q5JTC6 1135 aaPredicted RBP16.81■□□□□ 0.28
H3F3A-201ENST00000366813 CHGAP10645 457 aaKnown RBP16.78■□□□□ 0.28
H3F3A-201ENST00000366813 MARVELD3Q96A59 401 aa16.78■□□□□ 0.28
H3F3A-201ENST00000366813 RTN4Q9NQC3 1192 aaKnown RBP16.78■□□□□ 0.28
H3F3A-201ENST00000366813 ZNF710Q8N1W2 664 aa16.76■□□□□ 0.27
H3F3A-201ENST00000366813 CDAN1Q8IWY9 1227 aa16.75■□□□□ 0.27
H3F3A-201ENST00000366813 HS6ST3Q8IZP7 471 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms