RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 HNRNPUQ00839 825 aaKnown RBP eCLIP10.08□□□□□ -0.8
VPS13A-202ENST00000357409 NEUROD2Q15784 382 aa10.07□□□□□ -0.8
VPS13A-202ENST00000357409 TNNT2P45379 298 aaPredicted RBP10.07□□□□□ -0.8
VPS13A-202ENST00000357409 ANO8Q9HCE9 1232 aaPredicted RBP10.04□□□□□ -0.8
VPS13A-202ENST00000357409 NPHP1O15259 732 aa10.02□□□□□ -0.8
VPS13A-202ENST00000357409 RRP7BPQ9NSQ0 103 aa10.01□□□□□ -0.81
VPS13A-202ENST00000357409 SAFB2Q14151 953 aaKnown RBP eCLIP9.99□□□□□ -0.81
VPS13A-202ENST00000357409 PPP1R15AO75807 674 aaPredicted RBP9.98□□□□□ -0.81
VPS13A-202ENST00000357409 CHMP7Q8WUX9 453 aaPredicted RBP9.96□□□□□ -0.82
VPS13A-202ENST00000357409 WDR43Q15061 677 aaKnown RBP eCLIP9.94□□□□□ -0.82
VPS13A-202ENST00000357409 ZNF330Q9Y3S2 320 aaPredicted RBP9.92□□□□□ -0.82
VPS13A-202ENST00000357409 NCLP19338 710 aaKnown RBP9.92□□□□□ -0.82
VPS13A-202ENST00000357409 ANP32AP39687 249 aaKnown RBP9.91□□□□□ -0.82
VPS13A-202ENST00000357409 NUTM2FA1L443 756 aa9.91□□□□□ -0.82
VPS13A-202ENST00000357409 CSRNP3Q8WYN3 585 aa9.91□□□□□ -0.82
VPS13A-202ENST00000357409 NAP1L2Q9ULW6 460 aaPredicted RBP9.9□□□□□ -0.82
VPS13A-202ENST00000357409 PLCB2Q00722 1185 aa9.89□□□□□ -0.83
VPS13A-202ENST00000357409 CCDC9Q9Y3X0 531 aaKnown RBP9.89□□□□□ -0.83
VPS13A-202ENST00000357409 ISY1Q9ULR0 285 aaKnown RBP9.88□□□□□ -0.83
VPS13A-202ENST00000357409 TSPY4P0CV99 314 aa9.88□□□□□ -0.83
VPS13A-202ENST00000357409 TSPY10P0CW01 314 aa9.88□□□□□ -0.83
VPS13A-202ENST00000357409 NUTM2DQ5VT03 806 aaPredicted RBP9.88□□□□□ -0.83
VPS13A-202ENST00000357409 CCDC136Q96JN2 1154 aa9.87□□□□□ -0.83
VPS13A-202ENST00000357409 SPRYD3Q8NCJ5 442 aa9.86□□□□□ -0.83
VPS13A-202ENST00000357409 STK26Q9P289 416 aa9.86□□□□□ -0.83
VPS13A-202ENST00000357409 MRS2Q9HD23 443 aa9.85□□□□□ -0.83
VPS13A-202ENST00000357409 RTN4Q9NQC3 1192 aaKnown RBP9.85□□□□□ -0.83
VPS13A-202ENST00000357409 CC2D1BQ5T0F9 858 aaKnown RBP9.85□□□□□ -0.83
VPS13A-202ENST00000357409 APBB1O00213 710 aa9.84□□□□□ -0.83
VPS13A-202ENST00000357409 PAK3O75914 559 aaPredicted RBP9.83□□□□□ -0.84
VPS13A-202ENST00000357409 FRAT1Q92837 279 aaPredicted RBP9.83□□□□□ -0.84
VPS13A-202ENST00000357409 TONSLQ96HA7 1378 aa9.83□□□□□ -0.84
VPS13A-202ENST00000357409 U2SURPO15042 1029 aaKnown RBP9.83□□□□□ -0.84
VPS13A-202ENST00000357409 CLSTN1O94985 981 aa9.82□□□□□ -0.84
VPS13A-202ENST00000357409 PDE4CQ08493 712 aa9.82□□□□□ -0.84
VPS13A-202ENST00000357409 CDK11BP21127 795 aaKnown RBP9.82□□□□□ -0.84
VPS13A-202ENST00000357409 ANP32BQ92688 251 aaKnown RBP9.8□□□□□ -0.84
VPS13A-202ENST00000357409 UPF2Q9HAU5 1272 aaKnown RBP9.8□□□□□ -0.84
VPS13A-202ENST00000357409 MIER1Q8N108 512 aa9.79□□□□□ -0.84
VPS13A-202ENST00000357409 GGT6Q6P531 493 aa9.79□□□□□ -0.84
VPS13A-202ENST00000357409 SIN3AQ96ST3 1273 aa9.78□□□□□ -0.84
VPS13A-202ENST00000357409 ACIN1Q9UKV3 1341 aaKnown RBP9.77□□□□□ -0.85
VPS13A-202ENST00000357409 POGKQ9P215 609 aa9.77□□□□□ -0.85
VPS13A-202ENST00000357409 WWC1Q8IX03 1113 aa9.77□□□□□ -0.85
VPS13A-202ENST00000357409 ERICH6BQ5W0A0 696 aa9.76□□□□□ -0.85
VPS13A-202ENST00000357409 RGS3P49796 1198 aa9.75□□□□□ -0.85
VPS13A-202ENST00000357409 SUPT16HQ9Y5B9 1047 aaKnown RBP9.74□□□□□ -0.85
VPS13A-202ENST00000357409 KLHL34Q8N239 644 aa9.74□□□□□ -0.85
VPS13A-202ENST00000357409 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.74□□□□□ -0.85
VPS13A-202ENST00000357409 PHF23Q9BUL5 403 aaPredicted RBP9.74□□□□□ -0.85
VPS13A-202ENST00000357409 FBXO3Q9UK99 471 aa9.73□□□□□ -0.85
VPS13A-202ENST00000357409 FOXD1Q16676 465 aa9.73□□□□□ -0.85
VPS13A-202ENST00000357409 OS9Q13438 667 aaPredicted RBP9.73□□□□□ -0.85
VPS13A-202ENST00000357409 GOLGA2Q08379 1002 aa9.72□□□□□ -0.85
VPS13A-202ENST00000357409 ZNF428Q96B54 188 aa9.72□□□□□ -0.85
VPS13A-202ENST00000357409 LTV1Q96GA3 475 aaPredicted RBP9.71□□□□□ -0.85
VPS13A-202ENST00000357409 MSH5O43196 834 aa9.71□□□□□ -0.86
VPS13A-202ENST00000357409 MYH16Q9H6N6 1097 aa9.71□□□□□ -0.86
VPS13A-202ENST00000357409 ARID3AQ99856 593 aa9.7□□□□□ -0.86
VPS13A-202ENST00000357409 B4GALNT3Q6L9W6 998 aa9.7□□□□□ -0.86
VPS13A-202ENST00000357409 CSB-PGBD3P0DP91 1061 aa9.69□□□□□ -0.86
VPS13A-202ENST00000357409 SRPK2P78362 688 aaKnown RBP9.69□□□□□ -0.86
VPS13A-202ENST00000357409 DNTTIP2Q5QJE6 756 aaKnown RBP9.68□□□□□ -0.86
VPS13A-202ENST00000357409 NGEFQ8N5V2 710 aa9.68□□□□□ -0.86
VPS13A-202ENST00000357409 PLEKHD1A6NEE1 506 aa9.68□□□□□ -0.86
VPS13A-202ENST00000357409 AEBP2Q6ZN18 517 aaPredicted RBP9.68□□□□□ -0.86
VPS13A-202ENST00000357409 CARD11Q9BXL7 1154 aa9.68□□□□□ -0.86
VPS13A-202ENST00000357409 PRM3Q9NNZ6 103 aa9.67□□□□□ -0.86
VPS13A-202ENST00000357409 FGD1P98174 961 aa9.66□□□□□ -0.86
VPS13A-202ENST00000357409 MTUS2Q5JR59 1369 aa9.65□□□□□ -0.86
VPS13A-202ENST00000357409 KCNJ4P48050 445 aa9.65□□□□□ -0.86
VPS13A-202ENST00000357409 FTSJ3Q8IY81 847 aaKnown RBP9.65□□□□□ -0.86
VPS13A-202ENST00000357409 CHMP3Q9Y3E7 222 aa9.65□□□□□ -0.86
VPS13A-202ENST00000357409 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.64□□□□□ -0.87
VPS13A-202ENST00000357409 EIF4G2P78344 907 aaKnown RBP eCLIP9.64□□□□□ -0.87
VPS13A-202ENST00000357409 DCAF11Q8TEB1 546 aa9.64□□□□□ -0.87
VPS13A-202ENST00000357409 SAMD1Q6SPF0 538 aaPredicted RBP9.63□□□□□ -0.87
VPS13A-202ENST00000357409 CREBRFQ8IUR6 639 aa9.62□□□□□ -0.87
VPS13A-202ENST00000357409 CFDP1Q9UEE9 299 aaPredicted RBP9.61□□□□□ -0.87
VPS13A-202ENST00000357409 KNSTRNQ9Y448 316 aa9.61□□□□□ -0.87
VPS13A-202ENST00000357409 PTMAP06454 111 aaKnown RBP9.61□□□□□ -0.87
VPS13A-202ENST00000357409 NOL8Q76FK4 1167 aaKnown RBP9.61□□□□□ -0.87
VPS13A-202ENST00000357409 MAPK8IP3Q9UPT6 1336 aa9.61□□□□□ -0.87
VPS13A-202ENST00000357409 FOXD4L1Q9NU39 408 aa9.61□□□□□ -0.87
VPS13A-202ENST00000357409 RAD21O60216 631 aa9.6□□□□□ -0.87
VPS13A-202ENST00000357409 G3V3G9 751 aa9.6□□□□□ -0.87
VPS13A-202ENST00000357409 DCAF8Q5TAQ9 597 aa9.6□□□□□ -0.87
VPS13A-202ENST00000357409 ELL2O00472 640 aaPredicted RBP9.59□□□□□ -0.87
VPS13A-202ENST00000357409 TRIM44Q96DX7 344 aaPredicted RBP9.59□□□□□ -0.87
VPS13A-202ENST00000357409 ZRSR1Q15695 479 aaKnown RBP9.59□□□□□ -0.87
VPS13A-202ENST00000357409 NECTIN2Q92692 538 aa9.58□□□□□ -0.88
VPS13A-202ENST00000357409 FOXD4L6Q3SYB3 417 aaPredicted RBP9.57□□□□□ -0.88
VPS13A-202ENST00000357409 FOXD4L3Q6VB84 417 aaPredicted RBP9.57□□□□□ -0.88
VPS13A-202ENST00000357409 FOXD4L5Q5VV16 416 aaPredicted RBP9.56□□□□□ -0.88
VPS13A-202ENST00000357409 FOXD4L4Q8WXT5 416 aaPredicted RBP9.56□□□□□ -0.88
VPS13A-202ENST00000357409 SLC4A10Q6U841 1118 aa9.56□□□□□ -0.88
VPS13A-202ENST00000357409 CYB5RLQ6IPT4 315 aa9.56□□□□□ -0.88
VPS13A-202ENST00000357409 PPP1R1BQ9UD71 204 aaPredicted RBP9.55□□□□□ -0.88
VPS13A-202ENST00000357409 SYTL4Q96C24 671 aaPredicted RBP9.55□□□□□ -0.88
VPS13A-202ENST00000357409 CCDC146Q8IYE0 955 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms