RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 ARID3AQ99856 593 aa10.52□□□□□ -0.73
CIITA-201ENST00000324288 TONSLQ96HA7 1378 aa10.52□□□□□ -0.73
CIITA-201ENST00000324288 ABCC9O60706 1549 aa10.51□□□□□ -0.73
CIITA-201ENST00000324288 DNTTIP2Q5QJE6 756 aaKnown RBP10.51□□□□□ -0.73
CIITA-201ENST00000324288 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.51□□□□□ -0.73
CIITA-201ENST00000324288 TAOK2Q9UL54 1235 aa10.5□□□□□ -0.73
CIITA-201ENST00000324288 KDM2AQ9Y2K7 1162 aa10.49□□□□□ -0.73
CIITA-201ENST00000324288 DDRGK1Q96HY6 314 aa10.49□□□□□ -0.73
CIITA-201ENST00000324288 CHIC2Q9UKJ5 165 aa10.49□□□□□ -0.73
CIITA-201ENST00000324288 C14orf37Q86TY3 774 aa10.48□□□□□ -0.73
CIITA-201ENST00000324288 DEKP35659 375 aaKnown RBP10.48□□□□□ -0.73
CIITA-201ENST00000324288 BECN1Q14457 450 aa10.47□□□□□ -0.73
CIITA-201ENST00000324288 MRS2Q9HD23 443 aa10.47□□□□□ -0.73
CIITA-201ENST00000324288 WDR43Q15061 677 aaKnown RBP eCLIP10.46□□□□□ -0.73
CIITA-201ENST00000324288 TMC1Q8TDI8 760 aa10.46□□□□□ -0.73
CIITA-201ENST00000324288 MYH16Q9H6N6 1097 aa10.45□□□□□ -0.74
CIITA-201ENST00000324288 ERICH6BQ5W0A0 696 aa10.44□□□□□ -0.74
CIITA-201ENST00000324288 NOP58Q9Y2X3 529 aaKnown RBP10.42□□□□□ -0.74
CIITA-201ENST00000324288 NCBP3Q53F19 620 aaKnown RBP10.41□□□□□ -0.74
CIITA-201ENST00000324288 SUPT16HQ9Y5B9 1047 aaKnown RBP10.39□□□□□ -0.75
CIITA-201ENST00000324288 GOLGA6L22H0YM25 854 aa10.39□□□□□ -0.75
CIITA-201ENST00000324288 PLCB2Q00722 1185 aa10.39□□□□□ -0.75
CIITA-201ENST00000324288 SPRYD3Q8NCJ5 442 aa10.37□□□□□ -0.75
CIITA-201ENST00000324288 RGS3P49796 1198 aa10.35□□□□□ -0.75
CIITA-201ENST00000324288 PPM1GO15355 546 aaPredicted RBP10.34□□□□□ -0.75
CIITA-201ENST00000324288 B4GALNT3Q6L9W6 998 aa10.34□□□□□ -0.75
CIITA-201ENST00000324288 CSRNP3Q8WYN3 585 aa10.34□□□□□ -0.75
CIITA-201ENST00000324288 ZRSR1Q15695 479 aaKnown RBP10.32□□□□□ -0.76
CIITA-201ENST00000324288 PPP1R15AO75807 674 aaPredicted RBP10.3□□□□□ -0.76
CIITA-201ENST00000324288 HSP90AB1P08238 724 aaKnown RBP10.3□□□□□ -0.76
CIITA-201ENST00000324288 HAP1P54257 671 aaPredicted RBP10.29□□□□□ -0.76
CIITA-201ENST00000324288 NAP1L2Q9ULW6 460 aaPredicted RBP10.29□□□□□ -0.76
CIITA-201ENST00000324288 NPM1P06748 294 aaKnown RBP eCLIP10.29□□□□□ -0.76
CIITA-201ENST00000324288 RRP7BPQ9NSQ0 103 aa10.28□□□□□ -0.76
CIITA-201ENST00000324288 CLSTN1O94985 981 aa10.28□□□□□ -0.76
CIITA-201ENST00000324288 NEUROD2Q15784 382 aa10.28□□□□□ -0.76
CIITA-201ENST00000324288 FTSJ3Q8IY81 847 aaKnown RBP10.28□□□□□ -0.76
CIITA-201ENST00000324288 SCRIBQ14160 1630 aa10.26□□□□□ -0.77
CIITA-201ENST00000324288 NPHP1O15259 732 aa10.25□□□□□ -0.77
CIITA-201ENST00000324288 RGL3Q3MIN7 710 aa10.25□□□□□ -0.77
CIITA-201ENST00000324288 PPP4R2Q9NY27 417 aa10.25□□□□□ -0.77
CIITA-201ENST00000324288 LMOD2Q6P5Q4 547 aa10.24□□□□□ -0.77
CIITA-201ENST00000324288 CASC1Q6TDU7 716 aa10.24□□□□□ -0.77
CIITA-201ENST00000324288 DCAF1Q9Y4B6 1507 aa10.24□□□□□ -0.77
CIITA-201ENST00000324288 L1TD1Q5T7N2 865 aaKnown RBP10.23□□□□□ -0.77
CIITA-201ENST00000324288 CHAF1AQ13111 956 aaPredicted RBP10.23□□□□□ -0.77
CIITA-201ENST00000324288 KCNH8Q96L42 1107 aa10.22□□□□□ -0.77
CIITA-201ENST00000324288 DRC7Q8IY82 874 aa10.22□□□□□ -0.77
CIITA-201ENST00000324288 FGD1P98174 961 aa10.21□□□□□ -0.77
CIITA-201ENST00000324288 MSNP26038 577 aaKnown RBP10.21□□□□□ -0.77
CIITA-201ENST00000324288 FRAT1Q92837 279 aaPredicted RBP10.21□□□□□ -0.78
CIITA-201ENST00000324288 OS9Q13438 667 aaPredicted RBP10.21□□□□□ -0.78
CIITA-201ENST00000324288 GZF1Q9H116 711 aaPredicted RBP10.21□□□□□ -0.78
CIITA-201ENST00000324288 RBM19Q9Y4C8 960 aaKnown RBP10.2□□□□□ -0.78
CIITA-201ENST00000324288 ISY1Q9ULR0 285 aaKnown RBP10.19□□□□□ -0.78
CIITA-201ENST00000324288 TSPY4P0CV99 314 aa10.18□□□□□ -0.78
CIITA-201ENST00000324288 TSPY10P0CW01 314 aa10.18□□□□□ -0.78
CIITA-201ENST00000324288 TNNT3P45378 269 aaPredicted RBP10.18□□□□□ -0.78
CIITA-201ENST00000324288 KCNJ4P48050 445 aa10.18□□□□□ -0.78
CIITA-201ENST00000324288 HSCBQ8IWL3 235 aa10.18□□□□□ -0.78
CIITA-201ENST00000324288 MTUS2Q5JR59 1369 aa10.17□□□□□ -0.78
CIITA-201ENST00000324288 GOLGA6L6A8MZA4 724 aa10.17□□□□□ -0.78
CIITA-201ENST00000324288 EIF4G2P78344 907 aaKnown RBP eCLIP10.17□□□□□ -0.78
CIITA-201ENST00000324288 PDE4CQ08493 712 aa10.17□□□□□ -0.78
CIITA-201ENST00000324288 SOX12O15370 315 aa10.16□□□□□ -0.78
CIITA-201ENST00000324288 PNNQ9H307 717 aaKnown RBP10.16□□□□□ -0.78
CIITA-201ENST00000324288 CC2D1BQ5T0F9 858 aaKnown RBP10.15□□□□□ -0.78
CIITA-201ENST00000324288 SLKQ9H2G2 1235 aaPredicted RBP10.15□□□□□ -0.78
CIITA-201ENST00000324288 TIMELESSQ9UNS1 1208 aa10.15□□□□□ -0.79
CIITA-201ENST00000324288 KNSTRNQ9Y448 316 aa10.15□□□□□ -0.79
CIITA-201ENST00000324288 CFAP53Q96M91 514 aa10.14□□□□□ -0.79
CIITA-201ENST00000324288 GOLGA2Q08379 1002 aa10.14□□□□□ -0.79
CIITA-201ENST00000324288 VSIG10Q8N0Z9 540 aa10.14□□□□□ -0.79
CIITA-201ENST00000324288 GOLGA6L4A6NEF3 574 aa10.13□□□□□ -0.79
CIITA-201ENST00000324288 NRDCO43847 1150 aa10.13□□□□□ -0.79
CIITA-201ENST00000324288 APBB1O00213 710 aa10.13□□□□□ -0.79
CIITA-201ENST00000324288 MAPK8IP3Q9UPT6 1336 aa10.12□□□□□ -0.79
CIITA-201ENST00000324288 U2SURPO15042 1029 aaKnown RBP10.11□□□□□ -0.79
CIITA-201ENST00000324288 ANO8Q9HCE9 1232 aaPredicted RBP10.11□□□□□ -0.79
CIITA-201ENST00000324288 NOC3LQ8WTT2 800 aaKnown RBP10.1□□□□□ -0.79
CIITA-201ENST00000324288 CHMP7Q8WUX9 453 aaPredicted RBP10.1□□□□□ -0.79
CIITA-201ENST00000324288 FOXD4L1Q9NU39 408 aa10.1□□□□□ -0.79
CIITA-201ENST00000324288 KIAA2012Q0VF49 1180 aa10.09□□□□□ -0.79
CIITA-201ENST00000324288 A0A0U1RQG5 324 aaPredicted RBP10.09□□□□□ -0.79
CIITA-201ENST00000324288 TSHZ2Q9NRE2 1034 aa10.09□□□□□ -0.79
CIITA-201ENST00000324288 POGKQ9P215 609 aa10.08□□□□□ -0.8
CIITA-201ENST00000324288 HSP90AA2PQ14568 343 aaPredicted RBP10.08□□□□□ -0.8
CIITA-201ENST00000324288 KAT6BQ8WYB5 2073 aa10.08□□□□□ -0.8
CIITA-201ENST00000324288 PRM3Q9NNZ6 103 aa10.08□□□□□ -0.8
CIITA-201ENST00000324288 FOXD4L5Q5VV16 416 aaPredicted RBP10.07□□□□□ -0.8
CIITA-201ENST00000324288 FOXD4L4Q8WXT5 416 aaPredicted RBP10.07□□□□□ -0.8
CIITA-201ENST00000324288 CARD11Q9BXL7 1154 aa10.06□□□□□ -0.8
CIITA-201ENST00000324288 MYO15BQ96JP2 1530 aa10.06□□□□□ -0.8
CIITA-201ENST00000324288 GNL2Q13823 731 aaKnown RBP10.06□□□□□ -0.8
CIITA-201ENST00000324288 SAFB2Q14151 953 aaKnown RBP eCLIP10.06□□□□□ -0.8
CIITA-201ENST00000324288 CCDC180Q9P1Z9 1646 aa10.05□□□□□ -0.8
CIITA-201ENST00000324288 CLIP1P30622 1438 aa10.05□□□□□ -0.8
CIITA-201ENST00000324288 ZCCHC6Q5VYS8 1495 aaKnown RBP10.05□□□□□ -0.8
CIITA-201ENST00000324288 PATL2C9JE40 543 aaKnown RBP10.04□□□□□ -0.8
CIITA-201ENST00000324288 ZNF330Q9Y3S2 320 aaPredicted RBP10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 144 ms