RNA–Protein interactions for RNA: ENST00000306085.10

TRIM56-201, Transcript of tripartite motif containing 56, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TRIM56, Length 10,952 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56-201ENST00000306085 TMC1Q8TDI8 760 aa17.65■□□□□ 0.42
TRIM56-201ENST00000306085 CHAF1AQ13111 956 aaPredicted RBP17.64■□□□□ 0.41
TRIM56-201ENST00000306085 ARID4BQ4LE39 1312 aaPredicted RBP17.63■□□□□ 0.41
TRIM56-201ENST00000306085 ZNF777Q9ULD5 760 aaPredicted RBP17.63■□□□□ 0.41
TRIM56-201ENST00000306085 PLEKHG5O94827 1062 aa17.62■□□□□ 0.41
TRIM56-201ENST00000306085 CASC1Q6TDU7 716 aa17.61■□□□□ 0.41
TRIM56-201ENST00000306085 ZBTB7CA1YPR0 619 aa17.59■□□□□ 0.41
TRIM56-201ENST00000306085 TONSLQ96HA7 1378 aa17.58■□□□□ 0.4
TRIM56-201ENST00000306085 ARID3AQ99856 593 aa17.57■□□□□ 0.4
TRIM56-201ENST00000306085 NRDCO43847 1150 aa17.57■□□□□ 0.4
TRIM56-201ENST00000306085 DDX10Q13206 875 aaKnown RBP17.56■□□□□ 0.4
TRIM56-201ENST00000306085 LAS1LQ9Y4W2 734 aaKnown RBP17.55■□□□□ 0.4
TRIM56-201ENST00000306085 NOC3LQ8WTT2 800 aaKnown RBP17.53■□□□□ 0.4
TRIM56-201ENST00000306085 TNNT3P45378 269 aaPredicted RBP17.53■□□□□ 0.4
TRIM56-201ENST00000306085 PRM3Q9NNZ6 103 aa17.52■□□□□ 0.39
TRIM56-201ENST00000306085 DRC7Q8IY82 874 aa17.49■□□□□ 0.39
TRIM56-201ENST00000306085 MSNP26038 577 aaKnown RBP17.49■□□□□ 0.39
TRIM56-201ENST00000306085 C14orf37Q86TY3 774 aa17.48■□□□□ 0.39
TRIM56-201ENST00000306085 NAP1L2Q9ULW6 460 aaPredicted RBP17.47■□□□□ 0.39
TRIM56-201ENST00000306085 MRS2Q9HD23 443 aa17.47■□□□□ 0.39
TRIM56-201ENST00000306085 P3H3Q8IVL6 736 aa17.46■□□□□ 0.39
TRIM56-201ENST00000306085 FGD1P98174 961 aa17.45■□□□□ 0.38
TRIM56-201ENST00000306085 SENP3Q9H4L4 574 aaPredicted RBP17.42■□□□□ 0.38
TRIM56-201ENST00000306085 HSP90AB1P08238 724 aaKnown RBP17.42■□□□□ 0.38
TRIM56-201ENST00000306085 PNNQ9H307 717 aaKnown RBP17.42■□□□□ 0.38
TRIM56-201ENST00000306085 L1TD1Q5T7N2 865 aaKnown RBP17.42■□□□□ 0.38
TRIM56-201ENST00000306085 FTSJ3Q8IY81 847 aaKnown RBP17.41■□□□□ 0.38
TRIM56-201ENST00000306085 KIAA2012Q0VF49 1180 aa17.41■□□□□ 0.38
TRIM56-201ENST00000306085 PPM1GO15355 546 aaPredicted RBP17.39■□□□□ 0.37
TRIM56-201ENST00000306085 NPHP1O15259 732 aa17.39■□□□□ 0.37
TRIM56-201ENST00000306085 GOLGA6L4A6NEF3 574 aa17.38■□□□□ 0.37
TRIM56-201ENST00000306085 CALRP27797 417 aaKnown RBP17.37■□□□□ 0.37
TRIM56-201ENST00000306085 A0A0U1RQG5 324 aaPredicted RBP17.36■□□□□ 0.37
TRIM56-201ENST00000306085 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.36■□□□□ 0.37
TRIM56-201ENST00000306085 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.36■□□□□ 0.37
TRIM56-201ENST00000306085 PDE4CQ08493 712 aa17.35■□□□□ 0.37
TRIM56-201ENST00000306085 KCNJ4P48050 445 aa17.34■□□□□ 0.37
TRIM56-201ENST00000306085 KDM2AQ9Y2K7 1162 aa17.33■□□□□ 0.37
TRIM56-201ENST00000306085 SENP3-EIF4A1A0A087X0R7 540 aa17.32■□□□□ 0.36
TRIM56-201ENST00000306085 NOP58Q9Y2X3 529 aaKnown RBP17.32■□□□□ 0.36
TRIM56-201ENST00000306085 GOLGA6L1Q8N7Z2 621 aa17.29■□□□□ 0.36
TRIM56-201ENST00000306085 GOLGA2Q08379 1002 aa17.29■□□□□ 0.36
TRIM56-201ENST00000306085 OS9Q13438 667 aaPredicted RBP17.28■□□□□ 0.36
TRIM56-201ENST00000306085 RGS3P49796 1198 aa17.28■□□□□ 0.36
TRIM56-201ENST00000306085 ISY1Q9ULR0 285 aaKnown RBP17.28■□□□□ 0.36
TRIM56-201ENST00000306085 HAP1P54257 671 aaPredicted RBP17.27■□□□□ 0.36
TRIM56-201ENST00000306085 GNL2Q13823 731 aaKnown RBP17.26■□□□□ 0.35
TRIM56-201ENST00000306085 SPRYD3Q8NCJ5 442 aa17.25■□□□□ 0.35
TRIM56-201ENST00000306085 HSCBQ8IWL3 235 aa17.23■□□□□ 0.35
TRIM56-201ENST00000306085 FBXO3Q9UK99 471 aa17.22■□□□□ 0.35
TRIM56-201ENST00000306085 DEKP35659 375 aaKnown RBP17.22■□□□□ 0.35
TRIM56-201ENST00000306085 SETQ01105 290 aaPredicted RBP17.21■□□□□ 0.35
TRIM56-201ENST00000306085 HIRIP3Q9BW71 556 aaPredicted RBP17.21■□□□□ 0.35
TRIM56-201ENST00000306085 PATL2C9JE40 543 aaKnown RBP17.18■□□□□ 0.34
TRIM56-201ENST00000306085 ANO8Q9HCE9 1232 aaPredicted RBP17.16■□□□□ 0.34
TRIM56-201ENST00000306085 CHIC2Q9UKJ5 165 aa17.14■□□□□ 0.33
TRIM56-201ENST00000306085 MIER1Q8N108 512 aa17.14■□□□□ 0.33
TRIM56-201ENST00000306085 PPP1R15AO75807 674 aaPredicted RBP17.12■□□□□ 0.33
TRIM56-201ENST00000306085 FRAT1Q92837 279 aaPredicted RBP17.12■□□□□ 0.33
TRIM56-201ENST00000306085 NEUROD2Q15784 382 aa17.12■□□□□ 0.33
TRIM56-201ENST00000306085 SUPT16HQ9Y5B9 1047 aaKnown RBP17.12■□□□□ 0.33
TRIM56-201ENST00000306085 GZF1Q9H116 711 aaPredicted RBP17.11■□□□□ 0.33
TRIM56-201ENST00000306085 CFAP53Q96M91 514 aa17.11■□□□□ 0.33
TRIM56-201ENST00000306085 MCCP23508 829 aa17.09■□□□□ 0.33
TRIM56-201ENST00000306085 MAPK8IP3Q9UPT6 1336 aa17.04■□□□□ 0.32
TRIM56-201ENST00000306085 USP35Q9P2H5 1018 aa17.04■□□□□ 0.32
TRIM56-201ENST00000306085 CREBRFQ8IUR6 639 aa17.03■□□□□ 0.32
TRIM56-201ENST00000306085 PTMSP20962 102 aa17.03■□□□□ 0.32
TRIM56-201ENST00000306085 KNSTRNQ9Y448 316 aa17.02■□□□□ 0.31
TRIM56-201ENST00000306085 LMOD2Q6P5Q4 547 aa17.01■□□□□ 0.31
TRIM56-201ENST00000306085 NPM1P06748 294 aaKnown RBP eCLIP17.01■□□□□ 0.31
TRIM56-201ENST00000306085 TPM4P67936 248 aa17.01■□□□□ 0.31
TRIM56-201ENST00000306085 CHMP4BQ9H444 224 aaKnown RBP16.99■□□□□ 0.31
TRIM56-201ENST00000306085 CEP89Q96ST8 783 aa16.99■□□□□ 0.31
TRIM56-201ENST00000306085 EIF4G2P78344 907 aaKnown RBP eCLIP16.98■□□□□ 0.31
TRIM56-201ENST00000306085 HSP90B1P14625 803 aaKnown RBP16.98■□□□□ 0.31
TRIM56-201ENST00000306085 GBP4Q96PP9 640 aa16.98■□□□□ 0.31
TRIM56-201ENST00000306085 HSP90AA2PQ14568 343 aaPredicted RBP16.98■□□□□ 0.31
TRIM56-201ENST00000306085 TAF7LQ5H9L4 462 aa16.98■□□□□ 0.31
TRIM56-201ENST00000306085 SYAP1Q96A49 352 aaPredicted RBP16.97■□□□□ 0.31
TRIM56-201ENST00000306085 KIAA1211Q6ZU35 1233 aa16.96■□□□□ 0.31
TRIM56-201ENST00000306085 PPP4R2Q9NY27 417 aa16.96■□□□□ 0.31
TRIM56-201ENST00000306085 RRP12Q5JTH9 1297 aaKnown RBP16.94■□□□□ 0.3
TRIM56-201ENST00000306085 B4GALNT3Q6L9W6 998 aa16.94■□□□□ 0.3
TRIM56-201ENST00000306085 TPM3P06753 285 aa16.94■□□□□ 0.3
TRIM56-201ENST00000306085 PABPN1Q86U42 306 aaKnown RBP eCLIP16.93■□□□□ 0.3
TRIM56-201ENST00000306085 KRI1Q8N9T8 703 aaKnown RBP16.92■□□□□ 0.3
TRIM56-201ENST00000306085 CCAR2Q8N163 923 aaKnown RBP16.92■□□□□ 0.3
TRIM56-201ENST00000306085 RASSF8Q8NHQ8 419 aa16.92■□□□□ 0.3
TRIM56-201ENST00000306085 APBB1O00213 710 aa16.91■□□□□ 0.3
TRIM56-201ENST00000306085 ZNF771Q7L3S4 317 aaPredicted RBP16.91■□□□□ 0.3
TRIM56-201ENST00000306085 HTATSF1O43719 755 aaKnown RBP16.91■□□□□ 0.3
TRIM56-201ENST00000306085 SLKQ9H2G2 1235 aaPredicted RBP16.9■□□□□ 0.3
TRIM56-201ENST00000306085 MS4A1P11836 297 aa16.9■□□□□ 0.3
TRIM56-201ENST00000306085 PES1O00541 588 aaKnown RBP16.88■□□□□ 0.29
TRIM56-201ENST00000306085 WWC1Q8IX03 1113 aa16.88■□□□□ 0.29
TRIM56-201ENST00000306085 U2SURPO15042 1029 aaKnown RBP16.87■□□□□ 0.29
TRIM56-201ENST00000306085 RGL3Q3MIN7 710 aa16.87■□□□□ 0.29
TRIM56-201ENST00000306085 GOLGA6L3A6NEY3 463 aa16.87■□□□□ 0.29
TRIM56-201ENST00000306085 VSIG10Q8N0Z9 540 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms