RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 CCDC180Q9P1Z9 1646 aa13.7□□□□□ -0.22
CLIP1-201ENST00000302528 PLEKHG5O94827 1062 aa13.69□□□□□ -0.22
CLIP1-201ENST00000302528 NCBP3Q53F19 620 aaKnown RBP13.66□□□□□ -0.22
CLIP1-201ENST00000302528 C14orf37Q86TY3 774 aa13.66□□□□□ -0.22
CLIP1-201ENST00000302528 MRS2Q9HD23 443 aa13.65□□□□□ -0.22
CLIP1-201ENST00000302528 NPM1P06748 294 aaKnown RBP eCLIP13.65□□□□□ -0.22
CLIP1-201ENST00000302528 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.64□□□□□ -0.232e-7■■□□□ 13.3
CLIP1-201ENST00000302528 NAP1L5Q96NT1 182 aaPredicted RBP13.63□□□□□ -0.23
CLIP1-201ENST00000302528 CASC1Q6TDU7 716 aa13.63□□□□□ -0.23
CLIP1-201ENST00000302528 IRX6P78412 446 aaPredicted RBP13.63□□□□□ -0.23
CLIP1-201ENST00000302528 PLCB2Q00722 1185 aa13.63□□□□□ -0.23
CLIP1-201ENST00000302528 GOLGA6L6A8MZA4 724 aa13.62□□□□□ -0.23
CLIP1-201ENST00000302528 ERICH6BQ5W0A0 696 aa13.61□□□□□ -0.23
CLIP1-201ENST00000302528 TAOK2Q9UL54 1235 aa13.61□□□□□ -0.23
CLIP1-201ENST00000302528 PABPN1Q86U42 306 aaKnown RBP eCLIP13.58□□□□□ -0.23
CLIP1-201ENST00000302528 HAP1P54257 671 aaPredicted RBP13.58□□□□□ -0.24
CLIP1-201ENST00000302528 KDM2AQ9Y2K7 1162 aa13.58□□□□□ -0.24
CLIP1-201ENST00000302528 NRDCO43847 1150 aa13.58□□□□□ -0.24
CLIP1-201ENST00000302528 CLSTN1O94985 981 aa13.55□□□□□ -0.24
CLIP1-201ENST00000302528 AMER1Q5JTC6 1135 aaPredicted RBP13.54□□□□□ -0.24
CLIP1-201ENST00000302528 NPHP1O15259 732 aa13.53□□□□□ -0.24
CLIP1-201ENST00000302528 FGD1P98174 961 aa13.52□□□□□ -0.25
CLIP1-201ENST00000302528 PPP1R15AO75807 674 aaPredicted RBP13.51□□□□□ -0.25
CLIP1-201ENST00000302528 SENP3Q9H4L4 574 aaPredicted RBP13.51□□□□□ -0.25
CLIP1-201ENST00000302528 CHIC2Q9UKJ5 165 aa13.51□□□□□ -0.25
CLIP1-201ENST00000302528 PPM1GO15355 546 aaPredicted RBP13.5□□□□□ -0.25
CLIP1-201ENST00000302528 CHAF1AQ13111 956 aaPredicted RBP13.49□□□□□ -0.25
CLIP1-201ENST00000302528 FTSJ3Q8IY81 847 aaKnown RBP13.49□□□□□ -0.25
CLIP1-201ENST00000302528 SCRIBQ14160 1630 aa13.49□□□□□ -0.25
CLIP1-201ENST00000302528 RTN4Q9NQC3 1192 aaKnown RBP13.49□□□□□ -0.25
CLIP1-201ENST00000302528 NAP1L2Q9ULW6 460 aaPredicted RBP13.49□□□□□ -0.25
CLIP1-201ENST00000302528 CFAP53Q96M91 514 aa13.47□□□□□ -0.25
CLIP1-201ENST00000302528 L1TD1Q5T7N2 865 aaKnown RBP13.47□□□□□ -0.25
CLIP1-201ENST00000302528 CSRNP3Q8WYN3 585 aa13.46□□□□□ -0.25
CLIP1-201ENST00000302528 TSPY4P0CV99 314 aa13.46□□□□□ -0.25
CLIP1-201ENST00000302528 TSPY10P0CW01 314 aa13.46□□□□□ -0.25
CLIP1-201ENST00000302528 GOLGA6L4A6NEF3 574 aa13.46□□□□□ -0.26
CLIP1-201ENST00000302528 KCNJ4P48050 445 aa13.45□□□□□ -0.26
CLIP1-201ENST00000302528 PNNQ9H307 717 aaKnown RBP13.44□□□□□ -0.26
CLIP1-201ENST00000302528 GOLGA2Q08379 1002 aa13.44□□□□□ -0.26
CLIP1-201ENST00000302528 OS9Q13438 667 aaPredicted RBP13.44□□□□□ -0.26
CLIP1-201ENST00000302528 HSP90AB1P08238 724 aaKnown RBP13.44□□□□□ -0.26
CLIP1-201ENST00000302528 LAS1LQ9Y4W2 734 aaKnown RBP13.43□□□□□ -0.26
CLIP1-201ENST00000302528 PRM3Q9NNZ6 103 aa13.41□□□□□ -0.26
CLIP1-201ENST00000302528 DRC7Q8IY82 874 aa13.4□□□□□ -0.26
CLIP1-201ENST00000302528 MSNP26038 577 aaKnown RBP13.39□□□□□ -0.27
CLIP1-201ENST00000302528 ISY1Q9ULR0 285 aaKnown RBP13.39□□□□□ -0.27
CLIP1-201ENST00000302528 EIF4G2P78344 907 aaKnown RBP eCLIP13.38□□□□□ -0.27
CLIP1-201ENST00000302528 RSF1Q96T23 1441 aaPredicted RBP13.38□□□□□ -0.27
CLIP1-201ENST00000302528 MAPK8IP3Q9UPT6 1336 aa13.38□□□□□ -0.27
CLIP1-201ENST00000302528 HIRIP3Q9BW71 556 aaPredicted RBP13.38□□□□□ -0.27
CLIP1-201ENST00000302528 NOC3LQ8WTT2 800 aaKnown RBP13.38□□□□□ -0.27
CLIP1-201ENST00000302528 RGS3P49796 1198 aa13.38□□□□□ -0.27
CLIP1-201ENST00000302528 KIAA2012Q0VF49 1180 aa13.38□□□□□ -0.27
CLIP1-201ENST00000302528 NEUROD2Q15784 382 aa13.37□□□□□ -0.27
CLIP1-201ENST00000302528 LMOD2Q6P5Q4 547 aa13.36□□□□□ -0.27
CLIP1-201ENST00000302528 SENP3-EIF4A1A0A087X0R7 540 aa13.36□□□□□ -0.27
CLIP1-201ENST00000302528 CHMP4BQ9H444 224 aaKnown RBP13.35□□□□□ -0.27
CLIP1-201ENST00000302528 KNSTRNQ9Y448 316 aa13.34□□□□□ -0.27
CLIP1-201ENST00000302528 FRAT1Q92837 279 aaPredicted RBP13.34□□□□□ -0.27
CLIP1-201ENST00000302528 NUDCQ9Y266 331 aa13.32□□□□□ -0.28
CLIP1-201ENST00000302528 GNL2Q13823 731 aaKnown RBP13.32□□□□□ -0.28
CLIP1-201ENST00000302528 CDCA8Q53HL2 280 aa13.31□□□□□ -0.28
CLIP1-201ENST00000302528 TNNT3P45378 269 aaPredicted RBP13.31□□□□□ -0.28
CLIP1-201ENST00000302528 HSCBQ8IWL3 235 aa13.31□□□□□ -0.28
CLIP1-201ENST00000302528 MIER1Q8N108 512 aa13.31□□□□□ -0.28
CLIP1-201ENST00000302528 ARID4BQ4LE39 1312 aaPredicted RBP13.31□□□□□ -0.28
CLIP1-201ENST00000302528 NOP58Q9Y2X3 529 aaKnown RBP13.3□□□□□ -0.28
CLIP1-201ENST00000302528 MCCP23508 829 aa13.29□□□□□ -0.28
CLIP1-201ENST00000302528 RGL3Q3MIN7 710 aa13.28□□□□□ -0.28
CLIP1-201ENST00000302528 MS4A1P11836 297 aa13.28□□□□□ -0.28
CLIP1-201ENST00000302528 A0A0U1RQG5 324 aaPredicted RBP13.28□□□□□ -0.28
CLIP1-201ENST00000302528 SUPT16HQ9Y5B9 1047 aaKnown RBP13.27□□□□□ -0.28
CLIP1-201ENST00000302528 PDE4CQ08493 712 aa13.26□□□□□ -0.29
CLIP1-201ENST00000302528 MTUS2Q5JR59 1369 aa13.25□□□□□ -0.29
CLIP1-201ENST00000302528 ARID3AQ99856 593 aa13.24□□□□□ -0.29
CLIP1-201ENST00000302528 SPRYD3Q8NCJ5 442 aa13.23□□□□□ -0.29
CLIP1-201ENST00000302528 RRP7BPQ9NSQ0 103 aa13.22□□□□□ -0.29
CLIP1-201ENST00000302528 POGKQ9P215 609 aa13.22□□□□□ -0.29
CLIP1-201ENST00000302528 U2SURPO15042 1029 aaKnown RBP13.22□□□□□ -0.29
CLIP1-201ENST00000302528 GOLGA6L1Q8N7Z2 621 aa13.22□□□□□ -0.29
CLIP1-201ENST00000302528 PPP4R2Q9NY27 417 aa13.21□□□□□ -0.29
CLIP1-201ENST00000302528 RB1CC1Q8TDY2 1594 aa13.2□□□□□ -0.3
CLIP1-201ENST00000302528 KCNH8Q96L42 1107 aa13.2□□□□□ -0.3
CLIP1-201ENST00000302528 CFAP44Q96MT7 982 aa13.18□□□□□ -0.3
CLIP1-201ENST00000302528 CARD11Q9BXL7 1154 aa13.18□□□□□ -0.3
CLIP1-201ENST00000302528 TPM4P67936 248 aa13.17□□□□□ -0.3
CLIP1-201ENST00000302528 KIAA1211Q6ZU35 1233 aa13.17□□□□□ -0.3
CLIP1-201ENST00000302528 HTATSF1O43719 755 aaKnown RBP13.17□□□□□ -0.3
CLIP1-201ENST00000302528 CEP162Q5TB80 1403 aa13.16□□□□□ -0.3
CLIP1-201ENST00000302528 CEP89Q96ST8 783 aa13.15□□□□□ -0.3
CLIP1-201ENST00000302528 CHMP7Q8WUX9 453 aaPredicted RBP13.14□□□□□ -0.31
CLIP1-201ENST00000302528 GBP4Q96PP9 640 aa13.14□□□□□ -0.31
CLIP1-201ENST00000302528 CCDC34Q96HJ3 373 aa13.13□□□□□ -0.31
CLIP1-201ENST00000302528 USP35Q9P2H5 1018 aa13.13□□□□□ -0.31
CLIP1-201ENST00000302528 PTMSP20962 102 aa13.13□□□□□ -0.31
CLIP1-201ENST00000302528 DEKP35659 375 aaKnown RBP13.12□□□□□ -0.31
CLIP1-201ENST00000302528 CC2D1BQ5T0F9 858 aaKnown RBP13.12□□□□□ -0.31
CLIP1-201ENST00000302528 APBB1O00213 710 aa13.12□□□□□ -0.31
CLIP1-201ENST00000302528 SOX12O15370 315 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 71.2 ms