RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 CHAF1AQ13111 956 aaPredicted RBP15.5■□□□□ 0.07
SHROOM3-201ENST00000296043 DCAF1Q9Y4B6 1507 aa15.5■□□□□ 0.07
SHROOM3-201ENST00000296043 MRS2Q9HD23 443 aa15.49■□□□□ 0.07
SHROOM3-201ENST00000296043 MSNP26038 577 aaKnown RBP15.49■□□□□ 0.07
SHROOM3-201ENST00000296043 L1TD1Q5T7N2 865 aaKnown RBP15.49■□□□□ 0.07
SHROOM3-201ENST00000296043 HSP90AA2PQ14568 343 aaPredicted RBP15.47■□□□□ 0.07
SHROOM3-201ENST00000296043 PNNQ9H307 717 aaKnown RBP15.46■□□□□ 0.07
SHROOM3-201ENST00000296043 PLCB2Q00722 1185 aa15.45■□□□□ 0.06
SHROOM3-201ENST00000296043 RBM19Q9Y4C8 960 aaKnown RBP15.45■□□□□ 0.06
SHROOM3-201ENST00000296043 SENP3-EIF4A1A0A087X0R7 540 aa15.45■□□□□ 0.06
SHROOM3-201ENST00000296043 TONSLQ96HA7 1378 aa15.44■□□□□ 0.06
SHROOM3-201ENST00000296043 CCDC180Q9P1Z9 1646 aa15.43■□□□□ 0.06
SHROOM3-201ENST00000296043 TIMELESSQ9UNS1 1208 aa15.42■□□□□ 0.06
SHROOM3-201ENST00000296043 TMC1Q8TDI8 760 aa15.41■□□□□ 0.06
SHROOM3-201ENST00000296043 PKNOX2Q96KN3 472 aa15.39■□□□□ 0.05
SHROOM3-201ENST00000296043 MYH16Q9H6N6 1097 aa15.39■□□□□ 0.05
SHROOM3-201ENST00000296043 ZRSR1Q15695 479 aaKnown RBP15.38■□□□□ 0.05
SHROOM3-201ENST00000296043 PODXL2Q9NZ53 605 aa15.38■□□□□ 0.05
SHROOM3-201ENST00000296043 RSPH6AQ9H0K4 717 aa15.37■□□□□ 0.05
SHROOM3-201ENST00000296043 HIRIP3Q9BW71 556 aaPredicted RBP15.36■□□□□ 0.05
SHROOM3-201ENST00000296043 SPRYD3Q8NCJ5 442 aa15.35■□□□□ 0.05
SHROOM3-201ENST00000296043 PPP4R2Q9NY27 417 aa15.35■□□□□ 0.05
SHROOM3-201ENST00000296043 RGS3P49796 1198 aa15.35■□□□□ 0.05
SHROOM3-201ENST00000296043 B4GALNT3Q6L9W6 998 aa15.35■□□□□ 0.05
SHROOM3-201ENST00000296043 GOLGA6L6A8MZA4 724 aa15.33■□□□□ 0.04
SHROOM3-201ENST00000296043 HSP90AB1P08238 724 aaKnown RBP15.32■□□□□ 0.04
SHROOM3-201ENST00000296043 WDR43Q15061 677 aaKnown RBP eCLIP15.31■□□□□ 0.04
SHROOM3-201ENST00000296043 GZF1Q9H116 711 aaPredicted RBP15.31■□□□□ 0.04
SHROOM3-201ENST00000296043 TSHZ2Q9NRE2 1034 aa15.28■□□□□ 0.04
SHROOM3-201ENST00000296043 DRC7Q8IY82 874 aa15.28■□□□□ 0.04
SHROOM3-201ENST00000296043 CALRP27797 417 aaKnown RBP15.26■□□□□ 0.03
SHROOM3-201ENST00000296043 TULP1O00294 542 aaPredicted RBP15.22■□□□□ 0.03
SHROOM3-201ENST00000296043 NRDCO43847 1150 aa15.22■□□□□ 0.03
SHROOM3-201ENST00000296043 HSCBQ8IWL3 235 aa15.21■□□□□ 0.03
SHROOM3-201ENST00000296043 KIAA2012Q0VF49 1180 aa15.21■□□□□ 0.02
SHROOM3-201ENST00000296043 CASC1Q6TDU7 716 aa15.19■□□□□ 0.02
SHROOM3-201ENST00000296043 ANO8Q9HCE9 1232 aaPredicted RBP15.19■□□□□ 0.02
SHROOM3-201ENST00000296043 TAOK2Q9UL54 1235 aa15.18■□□□□ 0.02
SHROOM3-201ENST00000296043 ZNF771Q7L3S4 317 aaPredicted RBP15.15■□□□□ 0.02
SHROOM3-201ENST00000296043 ARID3CA6NKF2 412 aa15.15■□□□□ 0.02
SHROOM3-201ENST00000296043 GOLGA6L3A6NEY3 463 aa15.15■□□□□ 0.02
SHROOM3-201ENST00000296043 SLKQ9H2G2 1235 aaPredicted RBP15.15■□□□□ 0.02
SHROOM3-201ENST00000296043 FTSJ3Q8IY81 847 aaKnown RBP15.13■□□□□ 0.01
SHROOM3-201ENST00000296043 PTMSP20962 102 aa15.13■□□□□ 0.01
SHROOM3-201ENST00000296043 APPP05067 770 aa15.13■□□□□ 0.01
SHROOM3-201ENST00000296043 SETQ01105 290 aaPredicted RBP15.09■□□□□ 0.01
SHROOM3-201ENST00000296043 NOC3LQ8WTT2 800 aaKnown RBP15.08■□□□□ 0.01
SHROOM3-201ENST00000296043 GOLGA6L1Q8N7Z2 621 aa15.08■□□□□ 0
SHROOM3-201ENST00000296043 GOLGA6L4A6NEF3 574 aa15.07■□□□□ 0
SHROOM3-201ENST00000296043 P3H3Q8IVL6 736 aa15.06■□□□□ 0
SHROOM3-201ENST00000296043 IPO9Q96P70 1041 aaKnown RBP15.06■□□□□ 0
SHROOM3-201ENST00000296043 GBP4Q96PP9 640 aa15.05■□□□□ 0
SHROOM3-201ENST00000296043 FAM13BQ9NYF5 915 aa15.04■□□□□ -0
SHROOM3-201ENST00000296043 USP35Q9P2H5 1018 aa15.01□□□□□ -0.01
SHROOM3-201ENST00000296043 ZNF777Q9ULD5 760 aaPredicted RBP15.01□□□□□ -0.01
SHROOM3-201ENST00000296043 PATL2C9JE40 543 aaKnown RBP15.01□□□□□ -0.01
SHROOM3-201ENST00000296043 MYO15BQ96JP2 1530 aa15□□□□□ -0.01
SHROOM3-201ENST00000296043 NAP1L2Q9ULW6 460 aaPredicted RBP15□□□□□ -0.01
SHROOM3-201ENST00000296043 KDM2AQ9Y2K7 1162 aa15□□□□□ -0.01
SHROOM3-201ENST00000296043 FRAT1Q92837 279 aaPredicted RBP14.98□□□□□ -0.01
SHROOM3-201ENST00000296043 FGD1P98174 961 aa14.97□□□□□ -0.01
SHROOM3-201ENST00000296043 MAPK8IP2Q13387 824 aaPredicted RBP14.96□□□□□ -0.01
SHROOM3-201ENST00000296043 EIF4G2P78344 907 aaKnown RBP eCLIP14.94□□□□□ -0.02
SHROOM3-201ENST00000296043 GSE1Q14687 1217 aa14.93□□□□□ -0.02
SHROOM3-201ENST00000296043 KCNJ4P48050 445 aa14.92□□□□□ -0.02
SHROOM3-201ENST00000296043 CHGAP10645 457 aaKnown RBP14.91□□□□□ -0.02
SHROOM3-201ENST00000296043 NCBP3Q53F19 620 aaKnown RBP14.91□□□□□ -0.02
SHROOM3-201ENST00000296043 FOXD4L1Q9NU39 408 aa14.9□□□□□ -0.02
SHROOM3-201ENST00000296043 CHIC2Q9UKJ5 165 aa14.9□□□□□ -0.02
SHROOM3-201ENST00000296043 TAF7LQ5H9L4 462 aa14.9□□□□□ -0.02
SHROOM3-201ENST00000296043 SYAP1Q96A49 352 aaPredicted RBP14.89□□□□□ -0.03
SHROOM3-201ENST00000296043 PDE4CQ08493 712 aa14.89□□□□□ -0.03
SHROOM3-201ENST00000296043 NEUROD2Q15784 382 aa14.87□□□□□ -0.03
SHROOM3-201ENST00000296043 IL27Q8NEV9 243 aa14.86□□□□□ -0.03
SHROOM3-201ENST00000296043 BRPF3Q9ULD4 1205 aa14.86□□□□□ -0.03
SHROOM3-201ENST00000296043 CLSTN1O94985 981 aa14.85□□□□□ -0.03
SHROOM3-201ENST00000296043 CCAR2Q8N163 923 aaKnown RBP14.85□□□□□ -0.03
SHROOM3-201ENST00000296043 TCERG1O14776 1098 aaKnown RBP14.84□□□□□ -0.03
SHROOM3-201ENST00000296043 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.84□□□□□ -0.03
SHROOM3-201ENST00000296043 SLC4A3P48751 1232 aa14.83□□□□□ -0.04
SHROOM3-201ENST00000296043 FOXD4L5Q5VV16 416 aaPredicted RBP14.83□□□□□ -0.04
SHROOM3-201ENST00000296043 FOXD4L4Q8WXT5 416 aaPredicted RBP14.83□□□□□ -0.04
SHROOM3-201ENST00000296043 MCCP23508 829 aa14.82□□□□□ -0.04
SHROOM3-201ENST00000296043 ZNF592Q92610 1267 aa14.81□□□□□ -0.04
SHROOM3-201ENST00000296043 TEX35Q5T0J7 233 aa14.81□□□□□ -0.04
SHROOM3-201ENST00000296043 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.81□□□□□ -0.04
SHROOM3-201ENST00000296043 MFAP1P55081 439 aaKnown RBP14.8□□□□□ -0.04
SHROOM3-201ENST00000296043 CALD1Q05682 793 aaKnown RBP14.8□□□□□ -0.04
SHROOM3-201ENST00000296043 SENP3Q9H4L4 574 aaPredicted RBP14.8□□□□□ -0.04
SHROOM3-201ENST00000296043 DDX11L8A8MPP1 907 aa14.8□□□□□ -0.04
SHROOM3-201ENST00000296043 OS9Q13438 667 aaPredicted RBP14.8□□□□□ -0.04
SHROOM3-201ENST00000296043 NOM1Q5C9Z4 860 aaKnown RBP14.8□□□□□ -0.04
SHROOM3-201ENST00000296043 BCL11BQ9C0K0 894 aaPredicted RBP14.79□□□□□ -0.04
SHROOM3-201ENST00000296043 FAM43AQ8N2R8 423 aa14.78□□□□□ -0.04
SHROOM3-201ENST00000296043 GNL2Q13823 731 aaKnown RBP14.78□□□□□ -0.04
SHROOM3-201ENST00000296043 PHF14O94880 888 aa14.77□□□□□ -0.04
SHROOM3-201ENST00000296043 HTATSF1O43719 755 aaKnown RBP14.76□□□□□ -0.05
SHROOM3-201ENST00000296043 A0A0G2JS52 829 aa14.76□□□□□ -0.05
SHROOM3-201ENST00000296043 FANCIQ9NVI1 1328 aa14.76□□□□□ -0.05
SHROOM3-201ENST00000296043 APBB1O00213 710 aa14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms