RNA–Protein interactions for RNA: ENST00000258733.8

GPNMB-201, Transcript of glycoprotein nmb, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene GPNMB, Length 2,862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-201ENST00000258733 HSP90B1P14625 803 aaKnown RBP10.84□□□□□ -0.67
GPNMB-201ENST00000258733 FANCIQ9NVI1 1328 aa10.84□□□□□ -0.67
GPNMB-201ENST00000258733 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.84□□□□□ -0.67
GPNMB-201ENST00000258733 BCANQ96GW7 911 aa10.83□□□□□ -0.68
GPNMB-201ENST00000258733 BBXQ8WY36 941 aaPredicted RBP10.8□□□□□ -0.68
GPNMB-201ENST00000258733 ZFP91Q96JP5 570 aaPredicted RBP10.8□□□□□ -0.68
GPNMB-201ENST00000258733 IPO4Q8TEX9 1081 aaKnown RBP10.79□□□□□ -0.68
GPNMB-201ENST00000258733 GTF2E1P29083 439 aaPredicted RBP10.73□□□□□ -0.69
GPNMB-201ENST00000258733 TEX2Q8IWB9 1127 aa10.72□□□□□ -0.69
GPNMB-201ENST00000258733 POLR3GLQ9BT43 218 aa10.71□□□□□ -0.69
GPNMB-201ENST00000258733 SECISBP2LQ93073 1101 aaKnown RBP10.71□□□□□ -0.69
GPNMB-201ENST00000258733 C11orf95C9JLR9 678 aaPredicted RBP10.7□□□□□ -0.7
GPNMB-201ENST00000258733 TRIM41Q8WV44 630 aa10.7□□□□□ -0.7
GPNMB-201ENST00000258733 CHRM1P11229 460 aaPredicted RBP10.69□□□□□ -0.7
GPNMB-201ENST00000258733 TMEM132AQ24JP5 1023 aa10.69□□□□□ -0.7
GPNMB-201ENST00000258733 NBR1Q14596 966 aa10.68□□□□□ -0.7
GPNMB-201ENST00000258733 CANXP27824 592 aaKnown RBP10.67□□□□□ -0.7
GPNMB-201ENST00000258733 CCER1Q8TC90 406 aaPredicted RBP10.67□□□□□ -0.7
GPNMB-201ENST00000258733 NACADO15069 1562 aa10.67□□□□□ -0.7
GPNMB-201ENST00000258733 HSP90AA2PQ14568 343 aaPredicted RBP10.67□□□□□ -0.7
GPNMB-201ENST00000258733 FTSJ3Q8IY81 847 aaKnown RBP10.67□□□□□ -0.7
GPNMB-201ENST00000258733 RRP9O43818 475 aaKnown RBP10.66□□□□□ -0.7
GPNMB-201ENST00000258733 CNPY4Q8N129 248 aa10.66□□□□□ -0.7
GPNMB-201ENST00000258733 IGSF3O75054 1194 aa10.65□□□□□ -0.7
GPNMB-201ENST00000258733 STAC3Q96MF2 364 aa10.65□□□□□ -0.7
GPNMB-201ENST00000258733 RTL5Q5HYW3 569 aaPredicted RBP10.64□□□□□ -0.71
GPNMB-201ENST00000258733 SHROOM4Q9ULL8 1493 aa10.64□□□□□ -0.71
GPNMB-201ENST00000258733 UBTFP17480 764 aaKnown RBP10.63□□□□□ -0.71
GPNMB-201ENST00000258733 SUPT5HO00267 1087 aaKnown RBP10.63□□□□□ -0.71
GPNMB-201ENST00000258733 NCLP19338 710 aaKnown RBP10.63□□□□□ -0.71
GPNMB-201ENST00000258733 PRDM4Q9UKN5 801 aa10.63□□□□□ -0.71
GPNMB-201ENST00000258733 PPP6R1Q9UPN7 881 aa10.63□□□□□ -0.71
GPNMB-201ENST00000258733 CNGB1Q14028 1251 aaPredicted RBP10.62□□□□□ -0.71
GPNMB-201ENST00000258733 CFAP44Q96MT7 982 aa10.61□□□□□ -0.71
GPNMB-201ENST00000258733 MIER1Q8N108 512 aa10.61□□□□□ -0.71
GPNMB-201ENST00000258733 CCDC9Q9Y3X0 531 aaKnown RBP10.61□□□□□ -0.71
GPNMB-201ENST00000258733 UNC13AQ9UPW8 1703 aa10.61□□□□□ -0.71
GPNMB-201ENST00000258733 PRDM10Q9NQV6 1147 aa10.6□□□□□ -0.71
GPNMB-201ENST00000258733 RNF216Q9NWF9 866 aaPredicted RBP10.59□□□□□ -0.71
GPNMB-201ENST00000258733 BRPF3Q9ULD4 1205 aa10.59□□□□□ -0.71
GPNMB-201ENST00000258733 FOXD1Q16676 465 aa10.59□□□□□ -0.71
GPNMB-201ENST00000258733 CUX2O14529 1486 aa10.58□□□□□ -0.72
GPNMB-201ENST00000258733 RGS3P49796 1198 aa10.56□□□□□ -0.72
GPNMB-201ENST00000258733 KCNG1Q9UIX4 513 aa10.56□□□□□ -0.72
GPNMB-201ENST00000258733 CALD1Q05682 793 aaKnown RBP10.55□□□□□ -0.72
GPNMB-201ENST00000258733 WWC1Q8IX03 1113 aa10.55□□□□□ -0.72
GPNMB-201ENST00000258733 CECR2Q9BXF3 1484 aa10.55□□□□□ -0.72
GPNMB-201ENST00000258733 GTF3C5Q9Y5Q8 519 aaPredicted RBP10.55□□□□□ -0.72
GPNMB-201ENST00000258733 BICRAQ9NZM4 1560 aa10.54□□□□□ -0.72
GPNMB-201ENST00000258733 TICAM2Q86XR7 235 aa10.53□□□□□ -0.72
GPNMB-201ENST00000258733 NOP58Q9Y2X3 529 aaKnown RBP10.53□□□□□ -0.72
GPNMB-201ENST00000258733 WASHC2CQ9Y4E1 1318 aa10.52□□□□□ -0.72
GPNMB-201ENST00000258733 ZNF316A6NFI3 1004 aaPredicted RBP10.52□□□□□ -0.73
GPNMB-201ENST00000258733 CC2D2AQ9P2K1 1620 aa10.51□□□□□ -0.73
GPNMB-201ENST00000258733 PLCD3Q8N3E9 789 aa10.51□□□□□ -0.73
GPNMB-201ENST00000258733 FAM43AQ8N2R8 423 aa10.5□□□□□ -0.73
GPNMB-201ENST00000258733 ARID4BQ4LE39 1312 aaPredicted RBP10.5□□□□□ -0.73
GPNMB-201ENST00000258733 HSP90AA1P07900 732 aaKnown RBP10.48□□□□□ -0.73
GPNMB-201ENST00000258733 ZNF592Q92610 1267 aa10.48□□□□□ -0.73
GPNMB-201ENST00000258733 WASHC2AQ641Q2 1341 aa10.48□□□□□ -0.73
GPNMB-201ENST00000258733 HMGB1P09429 215 aaKnown RBP10.48□□□□□ -0.73
GPNMB-201ENST00000258733 TMED8Q6PL24 325 aaPredicted RBP10.47□□□□□ -0.73
GPNMB-201ENST00000258733 ZNF830Q96NB3 372 aaPredicted RBP10.46□□□□□ -0.73
GPNMB-201ENST00000258733 PPM1GO15355 546 aaPredicted RBP10.46□□□□□ -0.74
GPNMB-201ENST00000258733 FKBP8Q14318 412 aa10.45□□□□□ -0.74
GPNMB-201ENST00000258733 PLCB2Q00722 1185 aa10.44□□□□□ -0.74
GPNMB-201ENST00000258733 CENPJQ9HC77 1338 aaPredicted RBP10.43□□□□□ -0.74
GPNMB-201ENST00000258733 CLSTN1O94985 981 aa10.42□□□□□ -0.74
GPNMB-201ENST00000258733 PAK3O75914 559 aaPredicted RBP10.41□□□□□ -0.74
GPNMB-201ENST00000258733 NEFMP07197 916 aa10.41□□□□□ -0.74
GPNMB-201ENST00000258733 RGS22Q8NE09 1264 aa10.41□□□□□ -0.74
GPNMB-201ENST00000258733 GRIPAP1Q4V328 841 aa10.4□□□□□ -0.74
GPNMB-201ENST00000258733 USP35Q9P2H5 1018 aa10.4□□□□□ -0.74
GPNMB-201ENST00000258733 ITGAEP38570 1179 aa10.4□□□□□ -0.74
GPNMB-201ENST00000258733 FAM43BQ6ZT52 329 aaPredicted RBP10.4□□□□□ -0.74
GPNMB-201ENST00000258733 PABPN1Q86U42 306 aaKnown RBP eCLIP10.4□□□□□ -0.75
GPNMB-201ENST00000258733 FAM193AP78312 1265 aa10.39□□□□□ -0.75
GPNMB-201ENST00000258733 PUS7Q96PZ0 661 aaKnown RBP10.38□□□□□ -0.75
GPNMB-201ENST00000258733 TMEM51Q9NW97 253 aa10.38□□□□□ -0.75
GPNMB-201ENST00000258733 PATL2C9JE40 543 aaKnown RBP10.37□□□□□ -0.75
GPNMB-201ENST00000258733 PLCD4Q9BRC7 762 aa10.37□□□□□ -0.75
GPNMB-201ENST00000258733 PTMAP06454 111 aaKnown RBP10.36□□□□□ -0.75
GPNMB-201ENST00000258733 VGLL3A8MV65 326 aa10.35□□□□□ -0.75
GPNMB-201ENST00000258733 CHIC1Q5VXU3 224 aa10.35□□□□□ -0.75
GPNMB-201ENST00000258733 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.34□□□□□ -0.75
GPNMB-201ENST00000258733 VGFO15240 615 aaPredicted RBP10.34□□□□□ -0.75
GPNMB-201ENST00000258733 CLGNO14967 610 aa10.33□□□□□ -0.76
GPNMB-201ENST00000258733 PDCL3Q9H2J4 239 aa10.33□□□□□ -0.76
GPNMB-201ENST00000258733 IRX3P78415 501 aaPredicted RBP10.32□□□□□ -0.76
GPNMB-201ENST00000258733 PSMD1Q99460 953 aa10.32□□□□□ -0.76
GPNMB-201ENST00000258733 EIF4G1Q04637 1599 aaKnown RBP10.31□□□□□ -0.76
GPNMB-201ENST00000258733 MCCP23508 829 aa10.3□□□□□ -0.76
GPNMB-201ENST00000258733 HDAC5Q9UQL6 1122 aa10.3□□□□□ -0.76
GPNMB-201ENST00000258733 PTMSP20962 102 aa10.29□□□□□ -0.76
GPNMB-201ENST00000258733 MMP14P50281 582 aa10.29□□□□□ -0.76
GPNMB-201ENST00000258733 SLC52A1Q9NWF4 448 aa10.28□□□□□ -0.76
GPNMB-201ENST00000258733 ZNF622Q969S3 477 aaKnown RBP eCLIP10.27□□□□□ -0.77
GPNMB-201ENST00000258733 ARID3AQ99856 593 aa10.27□□□□□ -0.77
GPNMB-201ENST00000258733 GSE1Q14687 1217 aa10.26□□□□□ -0.77
GPNMB-201ENST00000258733 PRDM16Q9HAZ2 1276 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms