RNA–Protein interactions for RNA: ENST00000233072.9

CPS1-201, Transcript of carbamoyl-phosphate synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPS1, Length 5,821 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPS1-201ENST00000233072 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.55□□□□□ -0.88
CPS1-201ENST00000233072 BECN1Q14457 450 aa9.54□□□□□ -0.88
CPS1-201ENST00000233072 DDX10Q13206 875 aaKnown RBP9.53□□□□□ -0.88
CPS1-201ENST00000233072 WRNQ14191 1432 aaPredicted RBP eCLIP9.53□□□□□ -0.88
CPS1-201ENST00000233072 CFAP53Q96M91 514 aa9.53□□□□□ -0.88
CPS1-201ENST00000233072 MRS2Q9HD23 443 aa9.53□□□□□ -0.88
CPS1-201ENST00000233072 CEP162Q5TB80 1403 aa9.53□□□□□ -0.88
CPS1-201ENST00000233072 BAZ1AQ9NRL2 1556 aaPredicted RBP9.53□□□□□ -0.88
CPS1-201ENST00000233072 CHIC2Q9UKJ5 165 aa9.52□□□□□ -0.89
CPS1-201ENST00000233072 PLEKHD1A6NEE1 506 aa9.52□□□□□ -0.89
CPS1-201ENST00000233072 TNIKQ9UKE5 1360 aa9.51□□□□□ -0.89
CPS1-201ENST00000233072 CDK11BP21127 795 aaKnown RBP9.51□□□□□ -0.89
CPS1-201ENST00000233072 NCLP19338 710 aaKnown RBP9.5□□□□□ -0.89
CPS1-201ENST00000233072 CASC1Q6TDU7 716 aa9.5□□□□□ -0.89
CPS1-201ENST00000233072 PPP1R15AO75807 674 aaPredicted RBP9.5□□□□□ -0.89
CPS1-201ENST00000233072 CHMP4BQ9H444 224 aaKnown RBP9.5□□□□□ -0.89
CPS1-201ENST00000233072 FHAD1B1AJZ9 1412 aa9.49□□□□□ -0.89
CPS1-201ENST00000233072 GOLGA6L22H0YM25 854 aa9.48□□□□□ -0.89
CPS1-201ENST00000233072 KDM2AQ9Y2K7 1162 aa9.46□□□□□ -0.89
CPS1-201ENST00000233072 TNNT2P45379 298 aaPredicted RBP9.46□□□□□ -0.9
CPS1-201ENST00000233072 PNNQ9H307 717 aaKnown RBP9.46□□□□□ -0.9
CPS1-201ENST00000233072 MS4A1P11836 297 aa9.45□□□□□ -0.9
CPS1-201ENST00000233072 KANK1Q14678 1352 aa9.44□□□□□ -0.9
CPS1-201ENST00000233072 ERCC6Q03468 1493 aa9.44□□□□□ -0.9
CPS1-201ENST00000233072 KNSTRNQ9Y448 316 aa9.43□□□□□ -0.9
CPS1-201ENST00000233072 CFDP1Q9UEE9 299 aaPredicted RBP9.42□□□□□ -0.9
CPS1-201ENST00000233072 NUDCQ9Y266 331 aa9.42□□□□□ -0.9
CPS1-201ENST00000233072 RRP7BPQ9NSQ0 103 aa9.41□□□□□ -0.9
CPS1-201ENST00000233072 SCAF1Q9H7N4 1312 aaKnown RBP9.41□□□□□ -0.9
CPS1-201ENST00000233072 PLPPR3Q6T4P5 718 aa9.41□□□□□ -0.9
CPS1-201ENST00000233072 MAPK8IP3Q9UPT6 1336 aa9.4□□□□□ -0.9
CPS1-201ENST00000233072 CFAP44Q96MT7 982 aa9.4□□□□□ -0.9
CPS1-201ENST00000233072 SALL2Q9Y467 1007 aaPredicted RBP9.4□□□□□ -0.9
CPS1-201ENST00000233072 CCNB3Q8WWL7 1395 aa9.4□□□□□ -0.91
CPS1-201ENST00000233072 TIMELESSQ9UNS1 1208 aa9.39□□□□□ -0.91
CPS1-201ENST00000233072 SMARCA2P51531 1590 aa9.39□□□□□ -0.91
CPS1-201ENST00000233072 ZRSR1Q15695 479 aaKnown RBP9.39□□□□□ -0.91
CPS1-201ENST00000233072 HDGFP51858 240 aaKnown RBP9.38□□□□□ -0.91
CPS1-201ENST00000233072 TRIM44Q96DX7 344 aaPredicted RBP9.38□□□□□ -0.91
CPS1-201ENST00000233072 PPM1GO15355 546 aaPredicted RBP9.38□□□□□ -0.91
CPS1-201ENST00000233072 FTSJ3Q8IY81 847 aaKnown RBP9.38□□□□□ -0.91
CPS1-201ENST00000233072 C14orf37Q86TY3 774 aa9.37□□□□□ -0.91
CPS1-201ENST00000233072 CARD11Q9BXL7 1154 aa9.37□□□□□ -0.91
CPS1-201ENST00000233072 GOLGA6L6A8MZA4 724 aa9.37□□□□□ -0.91
CPS1-201ENST00000233072 EIF4G1Q04637 1599 aaKnown RBP9.36□□□□□ -0.91
CPS1-201ENST00000233072 KCNH8Q96L42 1107 aa9.36□□□□□ -0.91
CPS1-201ENST00000233072 ARHGAP35Q9NRY4 1499 aa9.35□□□□□ -0.91
CPS1-201ENST00000233072 ZBTB7CA1YPR0 619 aa9.35□□□□□ -0.91
CPS1-201ENST00000233072 HAP1P54257 671 aaPredicted RBP9.35□□□□□ -0.91
CPS1-201ENST00000233072 MIER1Q8N108 512 aa9.34□□□□□ -0.91
CPS1-201ENST00000233072 NBR1Q14596 966 aa9.34□□□□□ -0.91
CPS1-201ENST00000233072 ARID4BQ4LE39 1312 aaPredicted RBP9.33□□□□□ -0.92
CPS1-201ENST00000233072 TMF1P82094 1093 aa9.33□□□□□ -0.92
CPS1-201ENST00000233072 CARMIL2Q6F5E8 1435 aa9.33□□□□□ -0.92
CPS1-201ENST00000233072 POGKQ9P215 609 aa9.32□□□□□ -0.92
CPS1-201ENST00000233072 PPP4R2Q9NY27 417 aa9.32□□□□□ -0.92
CPS1-201ENST00000233072 CUX2O14529 1486 aa9.3□□□□□ -0.92
CPS1-201ENST00000233072 CARMIL1Q5VZK9 1371 aa9.3□□□□□ -0.92
CPS1-201ENST00000233072 PTMSP20962 102 aa9.3□□□□□ -0.92
CPS1-201ENST00000233072 PTMAP06454 111 aaKnown RBP9.3□□□□□ -0.92
CPS1-201ENST00000233072 EIF3AQ14152 1382 aaKnown RBP9.29□□□□□ -0.92
CPS1-201ENST00000233072 A0A0G2JS52 829 aa9.29□□□□□ -0.92
CPS1-201ENST00000233072 MYO15BQ96JP2 1530 aa9.29□□□□□ -0.92
CPS1-201ENST00000233072 SETD5Q9C0A6 1442 aa9.29□□□□□ -0.92
CPS1-201ENST00000233072 CCER2I3L3R5 266 aa9.28□□□□□ -0.92
CPS1-201ENST00000233072 NRDCO43847 1150 aa9.28□□□□□ -0.92
CPS1-201ENST00000233072 FMN1Q68DA7 1419 aa9.28□□□□□ -0.92
CPS1-201ENST00000233072 PDS5BQ9NTI5 1447 aa9.28□□□□□ -0.92
CPS1-201ENST00000233072 RGL3Q3MIN7 710 aa9.28□□□□□ -0.92
CPS1-201ENST00000233072 MCCP23508 829 aa9.28□□□□□ -0.92
CPS1-201ENST00000233072 VPS8Q8N3P4 1428 aa9.27□□□□□ -0.93
CPS1-201ENST00000233072 TOP2AP11388 1531 aaKnown RBP9.27□□□□□ -0.93
CPS1-201ENST00000233072 CALD1Q05682 793 aaKnown RBP9.27□□□□□ -0.93
CPS1-201ENST00000233072 CHMP4AQ9BY43 222 aa9.26□□□□□ -0.93
CPS1-201ENST00000233072 ERICH6BQ5W0A0 696 aa9.26□□□□□ -0.93
CPS1-201ENST00000233072 OS9Q13438 667 aaPredicted RBP9.25□□□□□ -0.93
CPS1-201ENST00000233072 KTN1Q86UP2 1357 aaKnown RBP9.25□□□□□ -0.93
CPS1-201ENST00000233072 HSP90AB1P08238 724 aaKnown RBP9.25□□□□□ -0.93
CPS1-201ENST00000233072 IRX6P78412 446 aaPredicted RBP9.25□□□□□ -0.93
CPS1-201ENST00000233072 ARXQ96QS3 562 aa9.23□□□□□ -0.93
CPS1-201ENST00000233072 L1TD1Q5T7N2 865 aaKnown RBP9.23□□□□□ -0.93
CPS1-201ENST00000233072 HSCBQ8IWL3 235 aa9.23□□□□□ -0.93
CPS1-201ENST00000233072 LAS1LQ9Y4W2 734 aaKnown RBP9.23□□□□□ -0.93
CPS1-201ENST00000233072 HDGFL2Q7Z4V5 671 aaPredicted RBP9.22□□□□□ -0.93
CPS1-201ENST00000233072 ANKRD30AQ9BXX3 1397 aa9.22□□□□□ -0.93
CPS1-201ENST00000233072 NOP58Q9Y2X3 529 aaKnown RBP9.21□□□□□ -0.93
CPS1-201ENST00000233072 HIRIP3Q9BW71 556 aaPredicted RBP9.21□□□□□ -0.93
CPS1-201ENST00000233072 IPO8O15397 1037 aaKnown RBP9.21□□□□□ -0.94
CPS1-201ENST00000233072 GOLGA2Q08379 1002 aa9.21□□□□□ -0.94
CPS1-201ENST00000233072 RALBP1Q15311 655 aa9.21□□□□□ -0.94
CPS1-201ENST00000233072 DNTTIP2Q5QJE6 756 aaKnown RBP9.21□□□□□ -0.94
CPS1-201ENST00000233072 NPHP1O15259 732 aa9.2□□□□□ -0.94
CPS1-201ENST00000233072 MORC1Q86VD1 984 aa9.2□□□□□ -0.94
CPS1-201ENST00000233072 SUPT16HQ9Y5B9 1047 aaKnown RBP9.2□□□□□ -0.94
CPS1-201ENST00000233072 CCDC88BA6NC98 1476 aa9.2□□□□□ -0.94
CPS1-201ENST00000233072 CCDC18Q5T9S5 1454 aa9.2□□□□□ -0.94
CPS1-201ENST00000233072 FGD1P98174 961 aa9.2□□□□□ -0.94
CPS1-201ENST00000233072 CC2D1BQ5T0F9 858 aaKnown RBP9.19□□□□□ -0.94
CPS1-201ENST00000233072 ROCK2O75116 1388 aaKnown RBP9.19□□□□□ -0.94
CPS1-201ENST00000233072 U2SURPO15042 1029 aaKnown RBP9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms