RNA–Protein interactions for RNA: ENST00000023939.8

RTFDC1-201, Transcript of Protein RTF2 homolog, humanhuman

TSL 2 BASIC

Gene RTFDC1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-201ENST00000023939 EFCAB5A4FU69 1503 aa22.08■■□□□ 1.13
RTFDC1-201ENST00000023939 FHAD1B1AJZ9 1412 aa22.07■■□□□ 1.12
RTFDC1-201ENST00000023939 AQRO60306 1485 aaKnown RBP eCLIP22.06■■□□□ 1.124e-8■■□□□ 11.4
RTFDC1-201ENST00000023939 ADAMTS12P58397 1594 aa22.04■■□□□ 1.12
RTFDC1-201ENST00000023939 ZNF608Q9ULD9 1512 aaPredicted RBP22.01■■□□□ 1.11
RTFDC1-201ENST00000023939 MAP3K1Q13233 1512 aa22■■□□□ 1.11
RTFDC1-201ENST00000023939 TTBK1Q5TCY1 1321 aaPredicted RBP21.95■■□□□ 1.1
RTFDC1-201ENST00000023939 EIF4G3O43432 1585 aaKnown RBP21.95■■□□□ 1.1
RTFDC1-201ENST00000023939 SAMD9Q5K651 1589 aa21.94■■□□□ 1.1
RTFDC1-201ENST00000023939 ZEB1P37275 1124 aaPredicted RBP21.89■■□□□ 1.09
RTFDC1-201ENST00000023939 FHOD3Q2V2M9 1422 aa21.88■■□□□ 1.09
RTFDC1-201ENST00000023939 MAGI1Q96QZ7 1491 aaPredicted RBP21.88■■□□□ 1.09
RTFDC1-201ENST00000023939 TIAM1Q13009 1591 aa21.88■■□□□ 1.09
RTFDC1-201ENST00000023939 SNAPC4Q5SXM2 1469 aa21.86■■□□□ 1.09
RTFDC1-201ENST00000023939 KANK4Q5T7N3 995 aaPredicted RBP21.86■■□□□ 1.09
RTFDC1-201ENST00000023939 FMN1Q68DA7 1419 aa21.86■■□□□ 1.09
RTFDC1-201ENST00000023939 FYCO1Q9BQS8 1478 aa21.86■■□□□ 1.09
RTFDC1-201ENST00000023939 CASKIN1Q8WXD9 1431 aa21.86■■□□□ 1.09
RTFDC1-201ENST00000023939 PCF11O94913 1555 aaKnown RBP21.85■■□□□ 1.09
RTFDC1-201ENST00000023939 IQGAP2Q13576 1575 aa21.84■■□□□ 1.09
RTFDC1-201ENST00000023939 CFAP43Q8NDM7 1665 aa21.81■■□□□ 1.08
RTFDC1-201ENST00000023939 GRIN2AQ12879 1464 aa21.81■■□□□ 1.08
RTFDC1-201ENST00000023939 P3H3Q8IVL6 736 aa21.8■■□□□ 1.08
RTFDC1-201ENST00000023939 KIAA0586Q9BVV6 1533 aa21.79■■□□□ 1.08
RTFDC1-201ENST00000023939 UGGT2Q9NYU1 1516 aa21.78■■□□□ 1.08
RTFDC1-201ENST00000023939 SYNJ2O15056 1496 aa21.78■■□□□ 1.08
RTFDC1-201ENST00000023939 LRRC9Q6ZRR7 1453 aa21.78■■□□□ 1.08
RTFDC1-201ENST00000023939 RRBP1Q9P2E9 1410 aaKnown RBP21.78■■□□□ 1.08
RTFDC1-201ENST00000023939 NUP160Q12769 1436 aa21.67■■□□□ 1.06
RTFDC1-201ENST00000023939 CHMP7Q8WUX9 453 aaPredicted RBP21.66■■□□□ 1.06
RTFDC1-201ENST00000023939 CCNB3Q8WWL7 1395 aa21.64■■□□□ 1.06
RTFDC1-201ENST00000023939 CEP170Q5SW79 1584 aa21.64■■□□□ 1.06
RTFDC1-201ENST00000023939 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.64■■□□□ 1.06
RTFDC1-201ENST00000023939 DISP1Q96F81 1524 aa21.63■■□□□ 1.05
RTFDC1-201ENST00000023939 CCER1Q8TC90 406 aaPredicted RBP21.62■■□□□ 1.05
RTFDC1-201ENST00000023939 KIAA0556O60303 1618 aa21.61■■□□□ 1.05
RTFDC1-201ENST00000023939 HNRNPUL2Q1KMD3 747 aaKnown RBP21.61■■□□□ 1.05
RTFDC1-201ENST00000023939 CCDC18Q5T9S5 1454 aa21.6■■□□□ 1.05
RTFDC1-201ENST00000023939 ATP1B4Q9UN42 357 aaPredicted RBP21.59■■□□□ 1.05
RTFDC1-201ENST00000023939 HECW1Q76N89 1606 aa21.59■■□□□ 1.05
RTFDC1-201ENST00000023939 LRRIQ1Q96JM4 1722 aa21.58■■□□□ 1.05
RTFDC1-201ENST00000023939 PHLDB1Q86UU1 1377 aa21.58■■□□□ 1.04
RTFDC1-201ENST00000023939 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.53■■□□□ 1.04
RTFDC1-201ENST00000023939 EHBP1L1Q8N3D4 1523 aa21.52■■□□□ 1.04
RTFDC1-201ENST00000023939 MTUS2Q5JR59 1369 aa21.52■■□□□ 1.04
RTFDC1-201ENST00000023939 FBLN2P98095 1184 aa21.5■■□□□ 1.03
RTFDC1-201ENST00000023939 EPRSP07814 1512 aaKnown RBP21.5■■□□□ 1.03
RTFDC1-201ENST00000023939 CARMIL2Q6F5E8 1435 aa21.48■■□□□ 1.03
RTFDC1-201ENST00000023939 JPH4Q96JJ6 628 aa21.46■■□□□ 1.03
RTFDC1-201ENST00000023939 ARHGEF11O15085 1522 aa21.46■■□□□ 1.03
RTFDC1-201ENST00000023939 SUPT6HQ7KZ85 1726 aaKnown RBP21.45■■□□□ 1.02
RTFDC1-201ENST00000023939 NCOA2Q15596 1464 aa21.44■■□□□ 1.02
RTFDC1-201ENST00000023939 MAGI3Q5TCQ9 1506 aa21.43■■□□□ 1.02
RTFDC1-201ENST00000023939 RAPGEF6Q8TEU7 1601 aa21.43■■□□□ 1.02
RTFDC1-201ENST00000023939 FGD6Q6ZV73 1430 aa21.42■■□□□ 1.02
RTFDC1-201ENST00000023939 NUP153P49790 1475 aaKnown RBP21.41■■□□□ 1.02
RTFDC1-201ENST00000023939 MYOM3Q5VTT5 1437 aa21.39■■□□□ 1.02
RTFDC1-201ENST00000023939 CHD1O14646 1710 aa21.39■■□□□ 1.01
RTFDC1-201ENST00000023939 CDK13Q14004 1512 aaKnown RBP21.38■■□□□ 1.01
RTFDC1-201ENST00000023939 CLSPNQ9HAW4 1339 aa21.37■■□□□ 1.01
RTFDC1-201ENST00000023939 FAM50AQ14320 339 aaKnown RBP21.33■■□□□ 1.01
RTFDC1-201ENST00000023939 SHROOM2Q13796 1616 aa21.32■■□□□ 1
RTFDC1-201ENST00000023939 DHX57Q6P158 1386 aaKnown RBP21.32■■□□□ 1
RTFDC1-201ENST00000023939 ABCA8O94911 1581 aa21.31■■□□□ 1
RTFDC1-201ENST00000023939 PLB1Q6P1J6 1458 aa21.31■■□□□ 1
RTFDC1-201ENST00000023939 TCOF1Q13428 1488 aaKnown RBP21.29■■□□□ 1
RTFDC1-201ENST00000023939 PRG4Q92954 1404 aaPredicted RBP21.29■■□□□ 1
RTFDC1-201ENST00000023939 MIA2Q96PC5 1412 aa21.29■■□□□ 1
RTFDC1-201ENST00000023939 SETD5Q9C0A6 1442 aa21.29■■□□□ 1
RTFDC1-201ENST00000023939 CDK11AQ9UQ88 783 aaPredicted RBP21.29■■□□□ 1
RTFDC1-201ENST00000023939 ITGAEP38570 1179 aa21.28■■□□□ 1
RTFDC1-201ENST00000023939 RAB3GAP2Q9H2M9 1393 aa21.26■□□□□ 0.99
RTFDC1-201ENST00000023939 PTPN23Q9H3S7 1636 aa21.26■□□□□ 0.99
RTFDC1-201ENST00000023939 TROQ12816 1431 aaPredicted RBP21.24■□□□□ 0.99
RTFDC1-201ENST00000023939 PTPRGP23470 1445 aa21.22■□□□□ 0.99
RTFDC1-201ENST00000023939 CLASP1Q7Z460 1538 aa21.21■□□□□ 0.99
RTFDC1-201ENST00000023939 ADCY10Q96PN6 1610 aa21.2■□□□□ 0.98
RTFDC1-201ENST00000023939 ARID3CA6NKF2 412 aa21.18■□□□□ 0.98
RTFDC1-201ENST00000023939 PTPRKQ15262 1439 aa21.18■□□□□ 0.98
RTFDC1-201ENST00000023939 HFM1A2PYH4 1435 aa21.17■□□□□ 0.98
RTFDC1-201ENST00000023939 ATP10BO94823 1461 aa21.16■□□□□ 0.98
RTFDC1-201ENST00000023939 DNAJC5Q9H3Z4 198 aa21.15■□□□□ 0.98
RTFDC1-201ENST00000023939 AKNAQ7Z591 1439 aa21.13■□□□□ 0.97
RTFDC1-201ENST00000023939 UACAQ9BZF9 1416 aa21.12■□□□□ 0.97
RTFDC1-201ENST00000023939 ITSN2Q9NZM3 1697 aa21.09■□□□□ 0.97
RTFDC1-201ENST00000023939 NAIPQ13075 1403 aa21.09■□□□□ 0.97
RTFDC1-201ENST00000023939 PLEKHD1A6NEE1 506 aa21.09■□□□□ 0.97
RTFDC1-201ENST00000023939 MAPKBP1O60336 1514 aa21.08■□□□□ 0.96
RTFDC1-201ENST00000023939 GPATCH8Q9UKJ3 1502 aaKnown RBP21.07■□□□□ 0.96
RTFDC1-201ENST00000023939 KIF14Q15058 1648 aa21.07■□□□□ 0.96
RTFDC1-201ENST00000023939 ERCC6L2Q5T890 1561 aa21.07■□□□□ 0.96
RTFDC1-201ENST00000023939 ABCC10Q5T3U5 1492 aa21.05■□□□□ 0.96
RTFDC1-201ENST00000023939 ABCC2Q92887 1545 aa21.04■□□□□ 0.96
RTFDC1-201ENST00000023939 DNMT1P26358 1616 aaKnown RBP21.03■□□□□ 0.96
RTFDC1-201ENST00000023939 ROCK1Q13464 1354 aa21.03■□□□□ 0.96
RTFDC1-201ENST00000023939 GCC2Q8IWJ2 1684 aa21.03■□□□□ 0.96
RTFDC1-201ENST00000023939 DAPK1P53355 1430 aa21.02■□□□□ 0.96
RTFDC1-201ENST00000023939 UHRF1BP1LA0JNW5 1464 aa21.01■□□□□ 0.95
RTFDC1-201ENST00000023939 ABCC5O15440 1437 aa21■□□□□ 0.95
RTFDC1-201ENST00000023939 CFDP1Q9UEE9 299 aaPredicted RBP20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms