RNA–Protein interactions for RNA: ENSMUST00000043767.8

Upf3a-201, Transcript of MCG3697, isoform CRA_c, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Upf3a, Length 2,057 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3a-201ENSMUST00000043767 Eif4g3Q80XI3 1579 aaKnown RBP35.72■■■■□ 3.31
Upf3a-201ENSMUST00000043767 Pbrm1Q8BSQ9 1634 aaKnown RBP35.68■■■■□ 3.3
Upf3a-201ENSMUST00000043767 Cux1P53564 1515 aa35.66■■■■□ 3.3
Upf3a-201ENSMUST00000043767 EprsQ8CGC7 1512 aaKnown RBP35.62■■■■□ 3.29
Upf3a-201ENSMUST00000043767 Eea1Q8BL66 1411 aa35.62■■■■□ 3.29
Upf3a-201ENSMUST00000043767 Ankrd26Q811D2 1581 aa35.61■■■■□ 3.29
Upf3a-201ENSMUST00000043767 Setd5Q5XJV7 1441 aa35.6■■■■□ 3.29
Upf3a-201ENSMUST00000043767 Rusc2Q80U22 1514 aa35.58■■■■□ 3.29
Upf3a-201ENSMUST00000043767 Cc2d2bA0A286YDU8 1405 aa35.57■■■■□ 3.28
Upf3a-201ENSMUST00000043767 Gpatch8A2A6A1 1505 aa35.53■■■■□ 3.28
Upf3a-201ENSMUST00000043767 Arap1Q4LDD4 1452 aa35.52■■■■□ 3.28
Upf3a-201ENSMUST00000043767 Polr1aO35134 1717 aaKnown RBP35.51■■■■□ 3.28
Upf3a-201ENSMUST00000043767 Ap3b1Q9Z1T1 1105 aa35.48■■■■□ 3.27
Upf3a-201ENSMUST00000043767 WizO88286 1684 aaKnown RBP35.46■■■■□ 3.27
Upf3a-201ENSMUST00000043767 Erich3F6QRE9 1637 aa35.45■■■■□ 3.27
Upf3a-201ENSMUST00000043767 Adamts12Q811B3 1600 aa35.45■■■■□ 3.27
Upf3a-201ENSMUST00000043767 Fyco1Q8VDC1 1437 aa35.45■■■■□ 3.27
Upf3a-201ENSMUST00000043767 CadpsQ80TJ1 1355 aa35.43■■■■□ 3.26
Upf3a-201ENSMUST00000043767 Rpap1Q80TE0 1409 aa35.42■■■■□ 3.26
Upf3a-201ENSMUST00000043767 PxdnQ3UQ28 1475 aa35.4■■■■□ 3.26
Upf3a-201ENSMUST00000043767 Gm7298A0A0N4SVU1 1476 aa35.37■■■■□ 3.25
Upf3a-201ENSMUST00000043767 TchhA0A0B4J1F9 1599 aa35.35■■■■□ 3.25
Upf3a-201ENSMUST00000043767 Abca16E9PWJ7 1678 aa35.35■■■■□ 3.25
Upf3a-201ENSMUST00000043767 Arhgef5E9Q7D5 1581 aa35.34■■■■□ 3.25
Upf3a-201ENSMUST00000043767 Pcf11G3X9Z4 1553 aa35.32■■■■□ 3.24
Upf3a-201ENSMUST00000043767 Lmo7E9PYF4 1699 aaKnown RBP35.3■■■■□ 3.24
Upf3a-201ENSMUST00000043767 Plekhg3Q4VAC9 1341 aa35.29■■■■□ 3.24
Upf3a-201ENSMUST00000043767 Abca5Q8K448 1642 aa35.28■■■■□ 3.24
Upf3a-201ENSMUST00000043767 Soga1E1U8D0 1418 aa35.23■■■■□ 3.23
Upf3a-201ENSMUST00000043767 Abcc2Q8VI47 1543 aa35.23■■■■□ 3.23
Upf3a-201ENSMUST00000043767 Arhgap27A2AB59 869 aa35.21■■■■□ 3.23
Upf3a-201ENSMUST00000043767 Aebp1Q640N1 1128 aa35.21■■■■□ 3.23
Upf3a-201ENSMUST00000043767 Tiam1Q60610 1591 aa35.11■■■■□ 3.21
Upf3a-201ENSMUST00000043767 Naip1Q9QWK5 1403 aa35.11■■■■□ 3.21
Upf3a-201ENSMUST00000043767 BlmO88700 1416 aa35.09■■■■□ 3.21
Upf3a-201ENSMUST00000043767 CntlnA2AM05 1397 aa35.06■■■■□ 3.2
Upf3a-201ENSMUST00000043767 Slx4Q6P1D7 1565 aa35.06■■■■□ 3.2
Upf3a-201ENSMUST00000043767 WrnO09053 1401 aa35.03■■■■□ 3.2
Upf3a-201ENSMUST00000043767 UbtfP25976 765 aaKnown RBP35.03■■■■□ 3.2
Upf3a-201ENSMUST00000043767 Shroom2A2ALU4 1481 aa35.02■■■■□ 3.2
Upf3a-201ENSMUST00000043767 Fgd6Q69ZL1 1399 aa35.02■■■■□ 3.2
Upf3a-201ENSMUST00000043767 Map3k4O08648 1597 aa34.98■■■■□ 3.19
Upf3a-201ENSMUST00000043767 Dnmt1P13864 1620 aaKnown RBP34.98■■■■□ 3.19
Upf3a-201ENSMUST00000043767 Lmod2Q3UHZ5 550 aa34.94■■■■□ 3.18
Upf3a-201ENSMUST00000043767 BC005561E9Q5E2 1589 aa34.93■■■■□ 3.18
Upf3a-201ENSMUST00000043767 AknaQ80VW7 1404 aa34.93■■■■□ 3.18
Upf3a-201ENSMUST00000043767 Kif27Q7M6Z4 1394 aa34.9■■■■□ 3.18
Upf3a-201ENSMUST00000043767 Neo1P97798 1493 aa34.9■■■■□ 3.18
Upf3a-201ENSMUST00000043767 Peg3Q3URU2 1571 aa34.89■■■■□ 3.18
Upf3a-201ENSMUST00000043767 Gm1043A0A140LJC2 1431 aa34.86■■■■□ 3.17
Upf3a-201ENSMUST00000043767 Zcchc11B2RX14 1644 aaKnown RBP34.73■■■■□ 3.15
Upf3a-201ENSMUST00000043767 Jph4Q80WT0 628 aa34.7■■■■□ 3.15
Upf3a-201ENSMUST00000043767 Rapgef6Q5NCJ1 1609 aa34.68■■■■□ 3.14
Upf3a-201ENSMUST00000043767 Arhgap31A6X8Z5 1425 aa34.68■■■■□ 3.14
Upf3a-201ENSMUST00000043767 Abcc1O35379 1528 aa34.67■■■■□ 3.14
Upf3a-201ENSMUST00000043767 Arhgef12Q8R4H2 1543 aaKnown RBP34.67■■■■□ 3.14
Upf3a-201ENSMUST00000043767 Mier1Q5UAK0 511 aa34.62■■■■□ 3.13
Upf3a-201ENSMUST00000043767 Pelp1Q9DBD5 1123 aaKnown RBP34.61■■■■□ 3.13
Upf3a-201ENSMUST00000043767 Gm14025A2AP89 1413 aa34.61■■■■□ 3.13
Upf3a-201ENSMUST00000043767 Pcgf6Q99NA9 353 aa34.6■■■■□ 3.13
Upf3a-201ENSMUST00000043767 Ncoa3O09000 1398 aa34.57■■■■□ 3.13
Upf3a-201ENSMUST00000043767 Fkbp15Q6P9Q6 1216 aaKnown RBP34.57■■■■□ 3.12
Upf3a-201ENSMUST00000043767 Chd1P40201 1711 aa34.55■■■■□ 3.12
Upf3a-201ENSMUST00000043767 Ccdc141E9Q8Q6 1531 aa34.55■■■■□ 3.12
Upf3a-201ENSMUST00000043767 Mug1P28665 1476 aa34.52■■■■□ 3.12
Upf3a-201ENSMUST00000043767 Arhgef11Q68FM7 1552 aa34.52■■■■□ 3.12
Upf3a-201ENSMUST00000043767 Pabpn1Q8CCS6 302 aaKnown RBP34.51■■■■□ 3.12
Upf3a-201ENSMUST00000043767 NexmifQ5DTT1 1515 aa34.51■■■■□ 3.11
Upf3a-201ENSMUST00000043767 Rrbp1Q99PL5 1605 aaKnown RBP34.5■■■■□ 3.11
Upf3a-201ENSMUST00000043767 Ncapd3Q6ZQK0 1506 aa34.5■■■■□ 3.11
Upf3a-201ENSMUST00000043767 Mroh2aD3Z750 1679 aa34.49■■■■□ 3.11
Upf3a-201ENSMUST00000043767 Lmtk2Q3TYD6 1471 aa34.47■■■■□ 3.11
Upf3a-201ENSMUST00000043767 Ncoa2Q61026 1462 aa34.47■■■■□ 3.11
Upf3a-201ENSMUST00000043767 Ccnb3Q810T2 1396 aa34.45■■■■□ 3.11
Upf3a-201ENSMUST00000043767 3425401B19RikD3Z1D3 1412 aa34.43■■■■□ 3.1
Upf3a-201ENSMUST00000043767 Magi1Q6RHR9 1471 aa34.41■■■■□ 3.1
Upf3a-201ENSMUST00000043767 Ythdc2B2RR83 1445 aaKnown RBP34.37■■■■□ 3.09
Upf3a-201ENSMUST00000043767 Kiaa1551Q5DTW7 1521 aa34.34■■■■□ 3.09
Upf3a-201ENSMUST00000043767 Cdc42bpaQ3UU96 1719 aa34.33■■■■□ 3.09
Upf3a-201ENSMUST00000043767 Gapvd1Q6PAR5 1458 aa34.32■■■■□ 3.08
Upf3a-201ENSMUST00000043767 Prex2Q3LAC4 1598 aa34.3■■■■□ 3.08
Upf3a-201ENSMUST00000043767 Fam163aQ8CAA5 168 aa34.29■■■■□ 3.08
Upf3a-201ENSMUST00000043767 Kdm5bQ80Y84 1544 aa34.29■■■■□ 3.08
Upf3a-201ENSMUST00000043767 Gcc2Q8CHG3 1679 aa34.28■■■■□ 3.08
Upf3a-201ENSMUST00000043767 PtprtQ99M80 1454 aa34.27■■■■□ 3.08
Upf3a-201ENSMUST00000043767 Dhx57Q6P5D3 1388 aaKnown RBP34.27■■■■□ 3.08
Upf3a-201ENSMUST00000043767 Fancd2Q80V62 1450 aa34.24■■■■□ 3.07
Upf3a-201ENSMUST00000043767 Mapkbp1Q6NS57 1503 aa34.23■■■■□ 3.07
Upf3a-201ENSMUST00000043767 Cul7Q8VE73 1689 aa34.2■■■■□ 3.06
Upf3a-201ENSMUST00000043767 Cep170Q6A065 1588 aa34.17■■■■□ 3.06
Upf3a-201ENSMUST00000043767 A2mQ6GQT1 1474 aa34.16■■■■□ 3.06
Upf3a-201ENSMUST00000043767 Fam50aQ9WV03 339 aaKnown RBP34.16■■■■□ 3.06
Upf3a-201ENSMUST00000043767 Arhgef40Q3UPH7 1517 aa34.14■■■■□ 3.06
Upf3a-201ENSMUST00000043767 NhsB1AV60 1647 aa34.14■■■■□ 3.06
Upf3a-201ENSMUST00000043767 Ifnlr1Q8CGK5 535 aa34.11■■■■□ 3.05
Upf3a-201ENSMUST00000043767 Adcy10Q8C0T9 1614 aa34.09■■■■□ 3.05
Upf3a-201ENSMUST00000043767 Znf608Q56A10 1511 aa34.03■■■■□ 3.04
Upf3a-201ENSMUST00000043767 Naip2Q9QUK4 1447 aa34.03■■■■□ 3.04
Upf3a-201ENSMUST00000043767 Fam208aQ69ZR9 1610 aaKnown RBP34.03■■■■□ 3.04
Upf3a-201ENSMUST00000043767 Igf1rQ60751 1373 aa34.03■■■■□ 3.04
Retrieved 100 of 22,080 RNA–protein pairs in 9.5 ms