RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 TRGC1P0CF51 173 aa6.68□□□□□ -1.34
SCN1A-222ENST00000642141 PKIAP61925 76 aa6.68□□□□□ -1.34
SCN1A-222ENST00000642141 REG3AQ06141 175 aa6.68□□□□□ -1.34
SCN1A-222ENST00000642141 IQCJQ1A5X6 159 aa6.68□□□□□ -1.34
SCN1A-222ENST00000642141 C14orf177Q52M58 125 aa6.68□□□□□ -1.34
SCN1A-222ENST00000642141 CIRBP-AS1Q8TBR5 109 aa6.68□□□□□ -1.34
SCN1A-222ENST00000642141 SMIM12Q96EX1 92 aa6.68□□□□□ -1.34
SCN1A-222ENST00000642141 TMEM243Q9BU79 118 aa6.68□□□□□ -1.34
SCN1A-222ENST00000642141 GFRA4Q9GZZ7 299 aa6.68□□□□□ -1.34
SCN1A-222ENST00000642141 DPH3P1Q9H4G8 78 aa6.68□□□□□ -1.34
SCN1A-222ENST00000642141 NIT2Q9NQR4 276 aa6.68□□□□□ -1.34
SCN1A-222ENST00000642141 BIN3Q9NQY0 253 aa6.68□□□□□ -1.34
SCN1A-222ENST00000642141 PRR34Q9NV39 138 aa6.68□□□□□ -1.34
SCN1A-222ENST00000642141 IGKV3OR2-268A0A0C4DH90 116 aa6.67□□□□□ -1.34
SCN1A-222ENST00000642141 J3QL48 77 aa6.67□□□□□ -1.34
SCN1A-222ENST00000642141 CTRLP40313 264 aa6.67□□□□□ -1.34
SCN1A-222ENST00000642141 KRTAP26-1Q6PEX3 210 aa6.67□□□□□ -1.34
SCN1A-222ENST00000642141 GATD1Q8NB37 220 aa6.67□□□□□ -1.34
SCN1A-222ENST00000642141 C20orf203Q8NBC4 194 aa6.67□□□□□ -1.34
SCN1A-222ENST00000642141 GTSF1Q8WW33 167 aa6.67□□□□□ -1.34
SCN1A-222ENST00000642141 UBE2L6O14933 153 aa6.66□□□□□ -1.34
SCN1A-222ENST00000642141 AMTP48728 403 aa6.66□□□□□ -1.34
SCN1A-222ENST00000642141 RPL39LQ96EH5 51 aaKnown RBP6.66□□□□□ -1.34
SCN1A-222ENST00000642141 PGLYRP4Q96LB8 373 aa6.66□□□□□ -1.34
SCN1A-222ENST00000642141 GATCO43716 136 aaKnown RBP6.65□□□□□ -1.34
SCN1A-222ENST00000642141 COTL1Q14019 142 aa6.65□□□□□ -1.34
SCN1A-222ENST00000642141 WDR73Q6P4I2 378 aa6.65□□□□□ -1.34
SCN1A-222ENST00000642141 hDV102S1A0JD36 115 aa6.64□□□□□ -1.35
SCN1A-222ENST00000642141 PANO1I0J062 215 aa6.64□□□□□ -1.35
SCN1A-222ENST00000642141 TAGLN2P37802 199 aaKnown RBP6.64□□□□□ -1.35
SCN1A-222ENST00000642141 BLOC1S1P78537 153 aa6.64□□□□□ -1.35
SCN1A-222ENST00000642141 EIF5A2Q9GZV4 153 aaKnown RBP6.64□□□□□ -1.35
SCN1A-222ENST00000642141 SMDT1Q9H4I9 107 aa6.64□□□□□ -1.35
SCN1A-222ENST00000642141 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-222ENST00000642141 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-222ENST00000642141 IGKV2-29A2NJV5 120 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-222ENST00000642141 GAS8-AS1O95177 125 aa6.63□□□□□ -1.35
SCN1A-222ENST00000642141 C10orf91Q5T1B1 145 aa6.63□□□□□ -1.35
SCN1A-222ENST00000642141 DGAT2L7PQ6IED9 249 aa6.63□□□□□ -1.35
SCN1A-222ENST00000642141 SMIM15Q7Z3B0 74 aa6.63□□□□□ -1.35
SCN1A-222ENST00000642141 SVBPQ8N300 66 aa6.63□□□□□ -1.35
SCN1A-222ENST00000642141 DPH3Q96FX2 82 aa6.63□□□□□ -1.35
SCN1A-222ENST00000642141 A0A1B0GUV1 79 aa6.62□□□□□ -1.35
SCN1A-222ENST00000642141 LOC105371267A0A1B0GV96 52 aa6.62□□□□□ -1.35
SCN1A-222ENST00000642141 GAGE12HA6NDE8 117 aa6.62□□□□□ -1.35
SCN1A-222ENST00000642141 A8MWL6 223 aa6.62□□□□□ -1.35
SCN1A-222ENST00000642141 TMEM250H0YL14 139 aa6.62□□□□□ -1.35
SCN1A-222ENST00000642141 LCE2BO14633 110 aa6.62□□□□□ -1.35
SCN1A-222ENST00000642141 KRTAP10-4P60372 401 aaPredicted RBP6.62□□□□□ -1.35
SCN1A-222ENST00000642141 AMMECR1LQ6DCA0 310 aa6.62□□□□□ -1.35
SCN1A-222ENST00000642141 RNASEKQ6P5S7 137 aaKnown RBP6.62□□□□□ -1.35
SCN1A-222ENST00000642141 C9orf163Q8N9P6 203 aa6.62□□□□□ -1.35
SCN1A-222ENST00000642141 SMIM7Q9BQ49 75 aa6.62□□□□□ -1.35
SCN1A-222ENST00000642141 CNFNQ9BYD5 112 aa6.62□□□□□ -1.35
SCN1A-222ENST00000642141 TRAV8-4A0A0B4J246 113 aa6.61□□□□□ -1.35
SCN1A-222ENST00000642141 SNAPINO95295 136 aa6.61□□□□□ -1.35
SCN1A-222ENST00000642141 SLPIP03973 132 aa6.61□□□□□ -1.35
SCN1A-222ENST00000642141 PMCHP20382 165 aa6.61□□□□□ -1.35
SCN1A-222ENST00000642141 SDIM1Q6ZPB5 146 aa6.61□□□□□ -1.35
SCN1A-222ENST00000642141 CLRN3Q8NCR9 226 aa6.61□□□□□ -1.35
SCN1A-222ENST00000642141 SEC11CQ9BY50 192 aa6.61□□□□□ -1.35
SCN1A-222ENST00000642141 CARHSP1Q9Y2V2 147 aaKnown RBP6.61□□□□□ -1.35
SCN1A-222ENST00000642141 TMEM218A2RU14 115 aa6.6□□□□□ -1.35
SCN1A-222ENST00000642141 SDHAF1A6NFY7 115 aa6.6□□□□□ -1.35
SCN1A-222ENST00000642141 CHTF8P0CG12 524 aa6.6□□□□□ -1.35
SCN1A-222ENST00000642141 RPL37AP61513 92 aaKnown RBP6.6□□□□□ -1.35
SCN1A-222ENST00000642141 HIGD2BQ4VC39 106 aa6.6□□□□□ -1.35
SCN1A-222ENST00000642141 LYPD6BQ8NI32 183 aa6.6□□□□□ -1.35
SCN1A-222ENST00000642141 AP5S1Q9NUS5 200 aa6.6□□□□□ -1.35
SCN1A-222ENST00000642141 ZNF727A8MUV8 499 aa6.59□□□□□ -1.35
SCN1A-222ENST00000642141 HIGD1CA8MV81 97 aa6.59□□□□□ -1.35
SCN1A-222ENST00000642141 APCSP02743 223 aa6.59□□□□□ -1.35
SCN1A-222ENST00000642141 FGF6P10767 208 aa6.59□□□□□ -1.35
SCN1A-222ENST00000642141 FAM231DQ6ZW35 169 aa6.59□□□□□ -1.35
SCN1A-222ENST00000642141 LINC01551Q86U37 167 aa6.59□□□□□ -1.35
SCN1A-222ENST00000642141 BORCS7Q96B45 105 aa6.59□□□□□ -1.35
SCN1A-222ENST00000642141 TMA7Q9Y2S6 64 aaKnown RBP6.59□□□□□ -1.35
SCN1A-222ENST00000642141 IGHV3-64A0A075B6Q5 118 aa6.58□□□□□ -1.36
SCN1A-222ENST00000642141 A0A1B0GUT8 65 aa6.58□□□□□ -1.36
SCN1A-222ENST00000642141 FAM231BA6NCW3 169 aa6.58□□□□□ -1.36
SCN1A-222ENST00000642141 KRTAP29-1A8MX34 341 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-222ENST00000642141 SMKR1H3BMG3 65 aa6.58□□□□□ -1.36
SCN1A-222ENST00000642141 I3L3M4 83 aa6.58□□□□□ -1.36
SCN1A-222ENST00000642141 APOC3P02656 99 aa6.58□□□□□ -1.36
SCN1A-222ENST00000642141 SRP19P09132 144 aaKnown RBP6.58□□□□□ -1.36
SCN1A-222ENST00000642141 RPS10P46783 165 aaKnown RBP6.58□□□□□ -1.36
SCN1A-222ENST00000642141 HNRNPA3P51991 378 aaKnown RBP6.58□□□□□ -1.36
SCN1A-222ENST00000642141 CNBPP62633 177 aaKnown RBP6.58□□□□□ -1.36
SCN1A-222ENST00000642141 C15orf56Q8N910 161 aa6.58□□□□□ -1.36
SCN1A-222ENST00000642141 TSKUQ8WUA8 353 aa6.58□□□□□ -1.36
SCN1A-222ENST00000642141 CHCHD10Q8WYQ3 142 aaPredicted RBP6.58□□□□□ -1.36
SCN1A-222ENST00000642141 ST20Q9HBF5 79 aa6.58□□□□□ -1.36
SCN1A-222ENST00000642141 TMEM242Q9NWH2 141 aa6.58□□□□□ -1.36
SCN1A-222ENST00000642141 LRP1Q07954 4544 aaKnown RBP6.57□□□□□ -1.36
SCN1A-222ENST00000642141 NCR2O95944 276 aa6.57□□□□□ -1.36
SCN1A-222ENST00000642141 TSHBP01222 138 aa6.57□□□□□ -1.36
SCN1A-222ENST00000642141 XCL1P47992 114 aa6.57□□□□□ -1.36
SCN1A-222ENST00000642141 AMN1Q8IY45 258 aa6.57□□□□□ -1.36
SCN1A-222ENST00000642141 LINC00526Q96FQ7 95 aa6.57□□□□□ -1.36
SCN1A-222ENST00000642141 RNF185Q96GF1 192 aa6.57□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms