RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 F8VRH5 84 aa3.83□□□□□ -1.8
SCN1A-218ENST00000640036 ANKRD39Q53RE8 183 aa3.83□□□□□ -1.8
SCN1A-218ENST00000640036 ZNF625Q96I27 306 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-218ENST00000640036 TEP1Q99973 2627 aaKnown RBP3.83□□□□□ -1.8
SCN1A-218ENST00000640036 C5orf38Q86SI9 138 aa3.82□□□□□ -1.8
SCN1A-218ENST00000640036 CDSNQ15517 529 aa3.82□□□□□ -1.8
SCN1A-218ENST00000640036 C3orf22Q8N5N4 141 aa3.82□□□□□ -1.8
SCN1A-218ENST00000640036 IGLC7A0M8Q6 106 aa3.82□□□□□ -1.8
SCN1A-218ENST00000640036 DYNAPQ8N1N2 210 aa3.82□□□□□ -1.8
SCN1A-218ENST00000640036 IGHV1-58A0A0C4DH39 117 aa3.82□□□□□ -1.8
SCN1A-218ENST00000640036 BAALC-AS2P0C853 105 aa3.82□□□□□ -1.8
SCN1A-218ENST00000640036 TMEM14CQ9P0S9 112 aa3.82□□□□□ -1.8
SCN1A-218ENST00000640036 ZNF492Q9P255 531 aa3.82□□□□□ -1.8
SCN1A-218ENST00000640036 SPAG11BQ08648 103 aa3.82□□□□□ -1.8
SCN1A-218ENST00000640036 UBE2D2P62837 147 aa3.81□□□□□ -1.8
SCN1A-218ENST00000640036 DMBT1Q9UGM3 2413 aaPredicted RBP3.81□□□□□ -1.8
SCN1A-218ENST00000640036 TRBV10-1A0A0K0K1A3 114 aa3.81□□□□□ -1.8
SCN1A-218ENST00000640036 CTSGP08311 255 aa3.81□□□□□ -1.8
SCN1A-218ENST00000640036 FAM19A2Q8N3H0 131 aa3.81□□□□□ -1.8
SCN1A-218ENST00000640036 CARD19Q96LW7 228 aa3.81□□□□□ -1.8
SCN1A-218ENST00000640036 MLST8Q9BVC4 326 aa3.81□□□□□ -1.8
SCN1A-218ENST00000640036 RNASE7Q9H1E1 156 aaKnown RBP3.81□□□□□ -1.8
SCN1A-218ENST00000640036 CRYBA4P53673 196 aa3.81□□□□□ -1.8
SCN1A-218ENST00000640036 MRPS36P82909 103 aaKnown RBP3.81□□□□□ -1.8
SCN1A-218ENST00000640036 LINC00337Q8N6G1 96 aa3.81□□□□□ -1.8
SCN1A-218ENST00000640036 RBAKDNA6NC62 111 aa3.81□□□□□ -1.8
SCN1A-218ENST00000640036 TCL1BO95988 128 aa3.81□□□□□ -1.8
SCN1A-218ENST00000640036 PLA2G1BP04054 148 aaKnown RBP3.81□□□□□ -1.8
SCN1A-218ENST00000640036 CRYGCP07315 174 aa3.81□□□□□ -1.8
SCN1A-218ENST00000640036 DEFB105AQ8NG35 78 aa3.81□□□□□ -1.8
SCN1A-218ENST00000640036 IGKV1D-8A0A087WSZ0 117 aa3.81□□□□□ -1.8
SCN1A-218ENST00000640036 Q8N8P6 123 aa3.81□□□□□ -1.8
SCN1A-218ENST00000640036 TRBV10-2A0A0K0K1G8 114 aa3.81□□□□□ -1.8
SCN1A-218ENST00000640036 A8MWP6 167 aa3.81□□□□□ -1.8
SCN1A-218ENST00000640036 LGALS9BQ3B8N2 356 aa3.81□□□□□ -1.8
SCN1A-218ENST00000640036 LGALS9CQ6DKI2 356 aa3.81□□□□□ -1.8
SCN1A-218ENST00000640036 TMEM14EPQ6UXP3 125 aa3.81□□□□□ -1.8
SCN1A-218ENST00000640036 LYPD6BQ8NI32 183 aa3.81□□□□□ -1.8
SCN1A-218ENST00000640036 NPYP01303 97 aa3.8□□□□□ -1.8
SCN1A-218ENST00000640036 ZC2HC1BQ5TFG8 222 aa3.8□□□□□ -1.8
SCN1A-218ENST00000640036 GFI1Q99684 422 aa3.8□□□□□ -1.8
SCN1A-218ENST00000640036 H0Y9J4 135 aa3.8□□□□□ -1.8
SCN1A-218ENST00000640036 MIAQ16674 131 aa3.8□□□□□ -1.8
SCN1A-218ENST00000640036 TP53TG1Q9Y2A0 90 aa3.8□□□□□ -1.8
SCN1A-218ENST00000640036 CD300CQ08708 224 aa3.8□□□□□ -1.8
SCN1A-218ENST00000640036 CEMP1Q6PRD7 247 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-218ENST00000640036 MSRB1Q9NZV6 116 aa3.8□□□□□ -1.8
SCN1A-218ENST00000640036 H3BMG7 143 aa3.8□□□□□ -1.8
SCN1A-218ENST00000640036 A0A0J9YX75 114 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 DIRC1Q969H9 104 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 POLR3KQ9Y2Y1 108 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-218ENST00000640036 TRAV12-1A0A0B4J245 112 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 IGKV1-6A0A0C4DH72 117 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 H3BT86 120 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 NUP35Q8NFH5 326 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 K7EIM0 57 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 IGLV2-8P01709 118 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 PROK1P58294 105 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 RNF126Q9BV68 326 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 GNRH2O43555 120 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 GATA1P15976 413 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-218ENST00000640036 HIST1H2BLQ99880 126 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 A0A1W2PPM0 123 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 BRI3O95415 125 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 FGF23Q9GZV9 251 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-218ENST00000640036 HIST1H2BKO60814 126 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 HIST1H2BJP06899 126 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 NPSP0C0P6 89 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 HIST1H2BOP23527 126 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 HIST1H2BBP33778 126 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 HIST1H2BDP58876 126 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 HIST1H2BCP62807 126 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 HIST2H2BEQ16778 126 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 RSPO1Q2MKA7 263 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-218ENST00000640036 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-218ENST00000640036 SERP2Q8N6R1 65 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 HIST1H2BHQ93079 126 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 HIST1H2BNQ99877 126 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 HIST1H2BMQ99879 126 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 HIGD2AQ9BW72 106 aa3.79□□□□□ -1.8
SCN1A-218ENST00000640036 A6NED7 52 aa3.78□□□□□ -1.8
SCN1A-218ENST00000640036 LECT2O14960 151 aa3.78□□□□□ -1.8
SCN1A-218ENST00000640036 CYTL1Q9NRR1 136 aa3.78□□□□□ -1.8
SCN1A-218ENST00000640036 IGHV4-4A0A075B6R2 117 aa3.78□□□□□ -1.8
SCN1A-218ENST00000640036 K7EP34 96 aa3.78□□□□□ -1.8
SCN1A-218ENST00000640036 SNAI2O43623 268 aa3.78□□□□□ -1.8
SCN1A-218ENST00000640036 COX8AP10176 69 aa3.78□□□□□ -1.8
SCN1A-218ENST00000640036 Q86TA4 180 aa3.78□□□□□ -1.8
SCN1A-218ENST00000640036 FHL3Q13643 280 aa3.78□□□□□ -1.8
SCN1A-218ENST00000640036 REG3GQ6UW15 175 aa3.78□□□□□ -1.8
SCN1A-218ENST00000640036 UNQ9165/PRO28630Q6UXU0 137 aa3.78□□□□□ -1.8
SCN1A-218ENST00000640036 Q8N1Y9 231 aa3.78□□□□□ -1.8
SCN1A-218ENST00000640036 AGPAT4-IT1Q9H0P7 198 aa3.78□□□□□ -1.8
SCN1A-218ENST00000640036 TMEM213A2RRL7 107 aa3.78□□□□□ -1.8
SCN1A-218ENST00000640036 H7C423 109 aa3.78□□□□□ -1.8
SCN1A-218ENST00000640036 K7EQG2 157 aa3.78□□□□□ -1.8
SCN1A-218ENST00000640036 Q9H8V8 135 aa3.78□□□□□ -1.8
SCN1A-218ENST00000640036 J3QQQ9 107 aa3.78□□□□□ -1.8
SCN1A-218ENST00000640036 BPY2O14599 106 aa3.78□□□□□ -1.8
SCN1A-218ENST00000640036 C22orf34Q6ZV56 151 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms