RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 TRBV27A0A0K0K1C4 114 aa12.24□□□□□ -0.45
CLN3-259ENST00000637551 PPBPP02775 128 aa12.24□□□□□ -0.45
CLN3-259ENST00000637551 RPL32P62910 135 aaKnown RBP12.24□□□□□ -0.45
CLN3-259ENST00000637551 AMN1Q8IY45 258 aa12.24□□□□□ -0.45
CLN3-259ENST00000637551 ST20Q9HBF5 79 aa12.24□□□□□ -0.45
CLN3-259ENST00000637551 TMEM242Q9NWH2 141 aa12.24□□□□□ -0.45
CLN3-259ENST00000637551 TRBV24-1A0A075B6N3 115 aa12.23□□□□□ -0.45
CLN3-259ENST00000637551 I3L3M4 83 aa12.23□□□□□ -0.45
CLN3-259ENST00000637551 PHOX2AO14813 284 aa12.23□□□□□ -0.45
CLN3-259ENST00000637551 TCAPO15273 167 aa12.23□□□□□ -0.45
CLN3-259ENST00000637551 ADCYAP1P18509 176 aa12.23□□□□□ -0.45
CLN3-259ENST00000637551 C10orf91Q5T1B1 145 aa12.23□□□□□ -0.45
CLN3-259ENST00000637551 TMEM70Q9BUB7 260 aa12.23□□□□□ -0.45
CLN3-259ENST00000637551 PRR34Q9NV39 138 aa12.23□□□□□ -0.45
CLN3-259ENST00000637551 TMEM262E9PQX1 116 aa12.22□□□□□ -0.45
CLN3-259ENST00000637551 PSCAO43653 123 aa12.22□□□□□ -0.45
CLN3-259ENST00000637551 AMTP48728 403 aa12.22□□□□□ -0.45
CLN3-259ENST00000637551 POLR2KP53803 58 aaKnown RBP12.22□□□□□ -0.45
CLN3-259ENST00000637551 MIAQ16674 131 aa12.22□□□□□ -0.45
CLN3-259ENST00000637551 MPV17L2Q567V2 206 aa12.22□□□□□ -0.45
CLN3-259ENST00000637551 RPL39LQ96EH5 51 aaKnown RBP12.22□□□□□ -0.45
CLN3-259ENST00000637551 C20orf78Q9BR46 151 aa12.22□□□□□ -0.45
CLN3-259ENST00000637551 PGPEP1Q9NXJ5 209 aa12.22□□□□□ -0.45
CLN3-259ENST00000637551 CARHSP1Q9Y2V2 147 aaKnown RBP12.22□□□□□ -0.45
CLN3-259ENST00000637551 A0A087WTM6 91 aa12.21□□□□□ -0.45
CLN3-259ENST00000637551 Q8N3U1 123 aa12.21□□□□□ -0.45
CLN3-259ENST00000637551 BTF3L4Q96K17 158 aa12.21□□□□□ -0.45
CLN3-259ENST00000637551 KLK12Q9UKR0 248 aa12.21□□□□□ -0.45
CLN3-259ENST00000637551 CRPP02741 224 aa12.2□□□□□ -0.46
CLN3-259ENST00000637551 APCSP02743 223 aa12.2□□□□□ -0.46
CLN3-259ENST00000637551 ZNF25P17030 456 aaPredicted RBP12.2□□□□□ -0.46
CLN3-259ENST00000637551 CAMPP49913 170 aa12.2□□□□□ -0.46
CLN3-259ENST00000637551 RBX1P62877 108 aa12.2□□□□□ -0.46
CLN3-259ENST00000637551 NTN5Q8WTR8 489 aaPredicted RBP12.2□□□□□ -0.46
CLN3-259ENST00000637551 VCYO14598 125 aa12.19□□□□□ -0.46
CLN3-259ENST00000637551 UBE2L6O14933 153 aa12.19□□□□□ -0.46
CLN3-259ENST00000637551 SUMO2P61956 95 aaKnown RBP12.19□□□□□ -0.46
CLN3-259ENST00000637551 MRPL51Q4U2R6 128 aaKnown RBP12.19□□□□□ -0.46
CLN3-259ENST00000637551 MRPL54Q6P161 138 aaKnown RBP12.19□□□□□ -0.46
CLN3-259ENST00000637551 NRACQ8N912 160 aa12.19□□□□□ -0.46
CLN3-259ENST00000637551 Q9HAA7 133 aa12.19□□□□□ -0.46
CLN3-259ENST00000637551 LAMTOR2Q9Y2Q5 125 aa12.19□□□□□ -0.46
CLN3-259ENST00000637551 LRCOL1A6NCL2 159 aa12.18□□□□□ -0.46
CLN3-259ENST00000637551 ANGP03950 147 aaKnown RBP12.18□□□□□ -0.46
CLN3-259ENST00000637551 PMCHP20382 165 aa12.18□□□□□ -0.46
CLN3-259ENST00000637551 SMAGPQ0VAQ4 97 aa12.18□□□□□ -0.46
CLN3-259ENST00000637551 RHEBQ15382 184 aa12.18□□□□□ -0.46
CLN3-259ENST00000637551 HSPG2P98160 4391 aa12.18□□□□□ -0.46
CLN3-259ENST00000637551 HERC1Q15751 4861 aa12.17□□□□□ -0.46
CLN3-259ENST00000637551 TRAV8-4A0A0B4J246 113 aa12.17□□□□□ -0.46
CLN3-259ENST00000637551 CKS2P33552 79 aa12.17□□□□□ -0.46
CLN3-259ENST00000637551 RPS10P46783 165 aaKnown RBP12.17□□□□□ -0.46
CLN3-259ENST00000637551 UBE2WQ96B02 151 aa12.17□□□□□ -0.46
CLN3-259ENST00000637551 KIR2DL4Q99706 377 aa12.17□□□□□ -0.46
CLN3-259ENST00000637551 C1orf43Q9BWL3 253 aa12.17□□□□□ -0.46
CLN3-259ENST00000637551 ESDP10768 282 aa12.16□□□□□ -0.46
CLN3-259ENST00000637551 GAGE6Q13070 117 aa12.16□□□□□ -0.46
CLN3-259ENST00000637551 SPATA12Q7Z6I5 190 aa12.16□□□□□ -0.46
CLN3-259ENST00000637551 ENHOQ6UWT2 76 aa12.15□□□□□ -0.46
CLN3-259ENST00000637551 MRPL52Q86TS9 123 aaKnown RBP12.15□□□□□ -0.46
CLN3-259ENST00000637551 ORMDL3Q8N138 153 aa12.15□□□□□ -0.46
CLN3-259ENST00000637551 Q8N976 141 aa12.15□□□□□ -0.46
CLN3-259ENST00000637551 C16orf90A8MZG2 172 aa12.14□□□□□ -0.47
CLN3-259ENST00000637551 TSHBP01222 138 aa12.14□□□□□ -0.47
CLN3-259ENST00000637551 COX19Q49B96 90 aa12.14□□□□□ -0.47
CLN3-259ENST00000637551 C20orf203Q8NBC4 194 aa12.14□□□□□ -0.47
CLN3-259ENST00000637551 IGKV2D-24A0A075B6R9 120 aa12.13□□□□□ -0.47
CLN3-259ENST00000637551 C7orf77A4D0Y5 90 aa12.13□□□□□ -0.47
CLN3-259ENST00000637551 GAS8-AS1O95177 125 aa12.13□□□□□ -0.47
CLN3-259ENST00000637551 S100PP25815 95 aa12.13□□□□□ -0.47
CLN3-259ENST00000637551 REG3AQ06141 175 aa12.13□□□□□ -0.47
CLN3-259ENST00000637551 NDUFA5Q16718 116 aa12.13□□□□□ -0.47
CLN3-259ENST00000637551 C14orf177Q52M58 125 aa12.13□□□□□ -0.47
CLN3-259ENST00000637551 CSDC2Q9Y534 153 aaKnown RBP12.13□□□□□ -0.47
CLN3-259ENST00000637551 PRSS47A8MTI9 375 aa12.12□□□□□ -0.47
CLN3-259ENST00000637551 D6R8Y8 96 aa12.12□□□□□ -0.47
CLN3-259ENST00000637551 TNFRSF6BO95407 300 aa12.12□□□□□ -0.47
CLN3-259ENST00000637551 AMMECR1LQ6DCA0 310 aa12.12□□□□□ -0.47
CLN3-259ENST00000637551 LINC00269Q8N2A0 174 aa12.12□□□□□ -0.47
CLN3-259ENST00000637551 Q8N814 137 aa12.12□□□□□ -0.47
CLN3-259ENST00000637551 CDK2AP2O75956 126 aa12.11□□□□□ -0.47
CLN3-259ENST00000637551 FCER1GP30273 86 aa12.11□□□□□ -0.47
CLN3-259ENST00000637551 KRTAP10-2P60368 255 aa12.11□□□□□ -0.47
CLN3-259ENST00000637551 TMEM18Q96B42 140 aa12.11□□□□□ -0.47
CLN3-259ENST00000637551 SMIM2Q9BVW6 85 aa12.11□□□□□ -0.47
CLN3-259ENST00000637551 SMKR1H3BMG3 65 aa12.1□□□□□ -0.47
CLN3-259ENST00000637551 K7EMI3 77 aa12.1□□□□□ -0.47
CLN3-259ENST00000637551 FGF6P10767 208 aa12.1□□□□□ -0.47
CLN3-259ENST00000637551 TMEM136Q6ZRR5 245 aa12.1□□□□□ -0.47
CLN3-259ENST00000637551 CLRN3Q8NCR9 226 aa12.1□□□□□ -0.47
CLN3-259ENST00000637551 TIMM21Q9BVV7 248 aa12.1□□□□□ -0.47
CLN3-259ENST00000637551 IGLV4-60A0A075B6I1 120 aa12.09□□□□□ -0.47
CLN3-259ENST00000637551 HLA-DQA1P01909 254 aa12.09□□□□□ -0.47
CLN3-259ENST00000637551 SVBPQ8N300 66 aa12.09□□□□□ -0.47
CLN3-259ENST00000637551 TMEM101Q96IK0 257 aa12.09□□□□□ -0.47
CLN3-259ENST00000637551 PRELID3AQ96N28 172 aa12.09□□□□□ -0.47
CLN3-259ENST00000637551 SNAPINO95295 136 aa12.08□□□□□ -0.48
CLN3-259ENST00000637551 MAPKAPK5-AS1Q8N8E1 139 aa12.08□□□□□ -0.48
CLN3-259ENST00000637551 CCL25O15444 150 aa12.07□□□□□ -0.48
CLN3-259ENST00000637551 NPYP01303 97 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms