RNA–Protein interactions for RNA: ENST00000637053.1

VIM-210, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 508 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-210ENST00000637053 DEFB113Q30KQ7 82 aa1.92□□□□□ -2.1
VIM-210ENST00000637053 SPANXN5Q5MJ07 72 aa1.92□□□□□ -2.1
VIM-210ENST00000637053 Q6ZS52 159 aa1.92□□□□□ -2.1
VIM-210ENST00000637053 Q8TAT8 98 aa1.92□□□□□ -2.1
VIM-210ENST00000637053 TMEM254Q8TBM7 123 aa1.92□□□□□ -2.1
VIM-210ENST00000637053 SMIM4Q8WVI0 70 aa1.92□□□□□ -2.1
VIM-210ENST00000637053 NMES1Q9C002 83 aa1.92□□□□□ -2.1
VIM-210ENST00000637053 CDC42SE2Q9NRR3 84 aa1.92□□□□□ -2.1
VIM-210ENST00000637053 C22orf24Q9Y442 160 aa1.92□□□□□ -2.1
VIM-210ENST00000637053 CD163L1Q9NR16 1453 aa1.92□□□□□ -2.1
VIM-210ENST00000637053 TRIP12Q14669 1992 aaPredicted RBP1.92□□□□□ -2.1
VIM-210ENST00000637053 KIAA1549Q9HCM3 1950 aa1.92□□□□□ -2.1
VIM-210ENST00000637053 TRPM2O94759 1503 aa1.91□□□□□ -2.1
VIM-210ENST00000637053 ADCY10Q96PN6 1610 aa1.91□□□□□ -2.1
VIM-210ENST00000637053 NUP188Q5SRE5 1749 aa1.91□□□□□ -2.1
VIM-210ENST00000637053 BRWD3Q6RI45 1802 aa1.91□□□□□ -2.1
VIM-210ENST00000637053 SCN3AQ9NY46 2000 aa1.91□□□□□ -2.1
VIM-210ENST00000637053 KIF26BQ2KJY2 2108 aa1.91□□□□□ -2.1
VIM-210ENST00000637053 MGAMO43451 1857 aa1.91□□□□□ -2.1
VIM-210ENST00000637053 MUC22E2RYF6 1773 aaPredicted RBP1.91□□□□□ -2.1
VIM-210ENST00000637053 TRAV23DV6A0A075B6W5 121 aa1.91□□□□□ -2.1
VIM-210ENST00000637053 IGHV3OR16-8A0A075B7F1 116 aa1.91□□□□□ -2.1
VIM-210ENST00000637053 TRBV6-8A0A0A6YYG3 113 aa1.91□□□□□ -2.1
VIM-210ENST00000637053 LOC101927531A0A1B0GV80 90 aa1.91□□□□□ -2.1
VIM-210ENST00000637053 LEPROTL1O95214 131 aa1.91□□□□□ -2.1
VIM-210ENST00000637053 PRH1P02810 166 aa1.91□□□□□ -2.1
VIM-210ENST00000637053 CFC1P0CG37 223 aa1.91□□□□□ -2.1
VIM-210ENST00000637053 SSBP1Q04837 148 aaKnown RBP1.91□□□□□ -2.1
VIM-210ENST00000637053 C9orf129Q5T035 196 aaKnown RBP1.91□□□□□ -2.1
VIM-210ENST00000637053 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.91□□□□□ -2.1
VIM-210ENST00000637053 CLECL1Q8IZS7 167 aa1.91□□□□□ -2.1
VIM-210ENST00000637053 IMMP1LQ96LU5 166 aa1.91□□□□□ -2.1
VIM-210ENST00000637053 RNF5Q99942 180 aa1.91□□□□□ -2.1
VIM-210ENST00000637053 MINOS1-NBL1R4GNA1 71 aa1.91□□□□□ -2.1
VIM-210ENST00000637053 ARFGEF1Q9Y6D6 1849 aa1.91□□□□□ -2.1
VIM-210ENST00000637053 SIPA1L2Q9P2F8 1722 aaPredicted RBP1.91□□□□□ -2.1
VIM-210ENST00000637053 NESP48681 1621 aa1.91□□□□□ -2.1
VIM-210ENST00000637053 CPS1P31327 1500 aa1.91□□□□□ -2.1
VIM-210ENST00000637053 SAMD9Q5K651 1589 aa1.9□□□□□ -2.1
VIM-210ENST00000637053 CEP170BQ9Y4F5 1589 aaPredicted RBP1.9□□□□□ -2.1
VIM-210ENST00000637053 AFDNP55196 1824 aaKnown RBP1.9□□□□□ -2.11
VIM-210ENST00000637053 IGHV3-64A0A075B6Q5 118 aa1.9□□□□□ -2.11
VIM-210ENST00000637053 ODF3BA8MYP8 253 aa1.9□□□□□ -2.11
VIM-210ENST00000637053 RTL8CO15255 209 aa1.9□□□□□ -2.11
VIM-210ENST00000637053 PSCAO43653 123 aa1.9□□□□□ -2.11
VIM-210ENST00000637053 S100A3P33764 101 aa1.9□□□□□ -2.11
VIM-210ENST00000637053 UBE2D1P51668 147 aa1.9□□□□□ -2.11
VIM-210ENST00000637053 KRTAP24-1Q3LI83 254 aa1.9□□□□□ -2.11
VIM-210ENST00000637053 GDF5OSQ5U4N7 250 aa1.9□□□□□ -2.11
VIM-210ENST00000637053 ATP5EP2Q5VTU8 51 aa1.9□□□□□ -2.11
VIM-210ENST00000637053 C2orf82Q6UX34 121 aa1.9□□□□□ -2.11
VIM-210ENST00000637053 CMC2Q9NRP2 79 aa1.9□□□□□ -2.11
VIM-210ENST00000637053 NDUFA4L2Q9NRX3 87 aa1.9□□□□□ -2.11
VIM-210ENST00000637053 TOP2BQ02880 1626 aa1.9□□□□□ -2.11
VIM-210ENST00000637053 PAPPAQ13219 1627 aa1.9□□□□□ -2.11
VIM-210ENST00000637053 USP32Q8NFA0 1604 aa1.9□□□□□ -2.11
VIM-210ENST00000637053 CICQ96RK0 1608 aaPredicted RBP1.9□□□□□ -2.11
VIM-210ENST00000637053 EML5Q05BV3 1969 aa1.9□□□□□ -2.11
VIM-210ENST00000637053 ARHGEF5Q12774 1597 aa1.89□□□□□ -2.11
VIM-210ENST00000637053 PTPRSQ13332 1948 aa1.89□□□□□ -2.11
VIM-210ENST00000637053 DOCK11Q5JSL3 2073 aa1.89□□□□□ -2.11
VIM-210ENST00000637053 LTBP1Q14766 1721 aa1.89□□□□□ -2.11
VIM-210ENST00000637053 KDM6BO15054 1643 aa1.89□□□□□ -2.11
VIM-210ENST00000637053 ALKQ9UM73 1620 aa1.89□□□□□ -2.11
VIM-210ENST00000637053 IGLV2-18A0A075B6J9 118 aa1.89□□□□□ -2.11
VIM-210ENST00000637053 LINC01549A6NIU2 74 aa1.89□□□□□ -2.11
VIM-210ENST00000637053 IGLV7-43P04211 117 aa1.89□□□□□ -2.11
VIM-210ENST00000637053 ARMS2P0C7Q2 107 aa1.89□□□□□ -2.11
VIM-210ENST00000637053 GTF3C1Q12789 2109 aa1.89□□□□□ -2.11
VIM-210ENST00000637053 LINC00483Q53H64 154 aa1.89□□□□□ -2.11
VIM-210ENST00000637053 Q5W150 140 aa1.89□□□□□ -2.11
VIM-210ENST00000637053 LYPD6Q86Y78 171 aa1.89□□□□□ -2.11
VIM-210ENST00000637053 Q8NAQ8 132 aa1.89□□□□□ -2.11
VIM-210ENST00000637053 LINC00167Q96N53 147 aa1.89□□□□□ -2.11
VIM-210ENST00000637053 LOC285556D6RIA3 1793 aa1.89□□□□□ -2.11
VIM-210ENST00000637053 CUL9Q8IWT3 2517 aa1.89□□□□□ -2.11
VIM-210ENST00000637053 ERCC6L2Q5T890 1561 aa1.89□□□□□ -2.11
VIM-210ENST00000637053 EIF2AK4Q9P2K8 1649 aaKnown RBP1.88□□□□□ -2.11
VIM-210ENST00000637053 ADAMTS7Q9UKP4 1686 aa1.88□□□□□ -2.11
VIM-210ENST00000637053 TRAV12-1A0A0B4J245 112 aa1.88□□□□□ -2.11
VIM-210ENST00000637053 TRBV10-1A0A0K0K1A3 114 aa1.88□□□□□ -2.11
VIM-210ENST00000637053 A0A1B0GU33 70 aa1.88□□□□□ -2.11
VIM-210ENST00000637053 A0A1W2PNM2 257 aa1.88□□□□□ -2.11
VIM-210ENST00000637053 NDUFAF8A1L188 74 aa1.88□□□□□ -2.11
VIM-210ENST00000637053 HMGN4O00479 90 aa1.88□□□□□ -2.11
VIM-210ENST00000637053 IGLV1-47P01700 117 aa1.88□□□□□ -2.11
VIM-210ENST00000637053 IGHV3-33P01772 117 aa1.88□□□□□ -2.11
VIM-210ENST00000637053 SAA2P0DJI9 122 aaPredicted RBP1.88□□□□□ -2.11
VIM-210ENST00000637053 CSAG1Q6PB30 78 aa1.88□□□□□ -2.11
VIM-210ENST00000637053 KRTAP26-1Q6PEX3 210 aa1.88□□□□□ -2.11
VIM-210ENST00000637053 ZNF833PQ6ZTB9 187 aa1.88□□□□□ -2.11
VIM-210ENST00000637053 ABRACLQ9P1F3 81 aa1.88□□□□□ -2.11
VIM-210ENST00000637053 TSC2P49815 1807 aa1.88□□□□□ -2.11
VIM-210ENST00000637053 WDR90Q96KV7 1748 aa1.88□□□□□ -2.11
VIM-210ENST00000637053 MRC1P22897 1456 aa1.88□□□□□ -2.11
VIM-210ENST00000637053 PHRF1Q9P1Y6 1649 aaKnown RBP1.88□□□□□ -2.11
VIM-210ENST00000637053 DLG5Q8TDM6 1919 aa1.87□□□□□ -2.11
VIM-210ENST00000637053 DOCK9Q9BZ29 2069 aa1.87□□□□□ -2.11
VIM-210ENST00000637053 PLCH1Q4KWH8 1693 aa1.87□□□□□ -2.11
VIM-210ENST00000637053 KIAA1549LQ6ZVL6 1849 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms