RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 FA2HQ7L5A8 372 aa14.21□□□□□ -0.13
CLN3-245ENST00000636172 APLNQ9ULZ1 77 aa14.21□□□□□ -0.13
CLN3-245ENST00000636172 LINC00614P0C842 121 aa14.2□□□□□ -0.14
CLN3-245ENST00000636172 FCER1GP30273 86 aa14.2□□□□□ -0.14
CLN3-245ENST00000636172 RNASEKQ6P5S7 137 aaKnown RBP14.2□□□□□ -0.14
CLN3-245ENST00000636172 PLECQ15149 4684 aaKnown RBP14.2□□□□□ -0.14
CLN3-245ENST00000636172 TENM2Q9NT68 2774 aa14.2□□□□□ -0.14
CLN3-245ENST00000636172 SERF1AO75920 110 aa14.2□□□□□ -0.14
CLN3-245ENST00000636172 LYPD5Q6UWN5 251 aa14.2□□□□□ -0.14
CLN3-245ENST00000636172 AP5S1Q9NUS5 200 aa14.2□□□□□ -0.14
CLN3-245ENST00000636172 KMT2CQ8NEZ4 4911 aaKnown RBP14.19□□□□□ -0.14
CLN3-245ENST00000636172 TRBV6-8A0A0A6YYG3 113 aa14.19□□□□□ -0.14
CLN3-245ENST00000636172 NDUFA6P56556 154 aa14.19□□□□□ -0.14
CLN3-245ENST00000636172 K7EMI3 77 aa14.18□□□□□ -0.14
CLN3-245ENST00000636172 TIRAPP58753 221 aa14.18□□□□□ -0.14
CLN3-245ENST00000636172 LAGE3Q14657 143 aa14.18□□□□□ -0.14
CLN3-245ENST00000636172 ESRGQ1W209 222 aa14.18□□□□□ -0.14
CLN3-245ENST00000636172 TMEM97Q5BJF2 176 aa14.18□□□□□ -0.14
CLN3-245ENST00000636172 COA6Q5JTJ3 125 aaKnown RBP14.18□□□□□ -0.14
CLN3-245ENST00000636172 CHCHD1Q96BP2 118 aaKnown RBP14.18□□□□□ -0.14
CLN3-245ENST00000636172 NUPR1O60356 82 aa14.17□□□□□ -0.14
CLN3-245ENST00000636172 AMTP48728 403 aa14.17□□□□□ -0.14
CLN3-245ENST00000636172 CHCHD7Q9BUK0 85 aa14.17□□□□□ -0.14
CLN3-245ENST00000636172 TCTAP57738 103 aa14.16□□□□□ -0.14
CLN3-245ENST00000636172 ORMDL2Q53FV1 153 aa14.16□□□□□ -0.14
CLN3-245ENST00000636172 TRBV25-1A0A075B6N4 114 aa14.15□□□□□ -0.14
CLN3-245ENST00000636172 IGHV1-24A0A0C4DH33 117 aa14.15□□□□□ -0.14
CLN3-245ENST00000636172 ESDP10768 282 aa14.15□□□□□ -0.14
CLN3-245ENST00000636172 TMA7Q9Y2S6 64 aaKnown RBP14.15□□□□□ -0.14
CLN3-245ENST00000636172 LELP1Q5T871 98 aa14.15□□□□□ -0.14
CLN3-245ENST00000636172 PMCHL1Q16048 86 aa14.14□□□□□ -0.15
CLN3-245ENST00000636172 TMEM243Q9BU79 118 aa14.14□□□□□ -0.15
CLN3-245ENST00000636172 A0A096LNJ9 63 aa14.13□□□□□ -0.15
CLN3-245ENST00000636172 HSBP1O75506 76 aa14.13□□□□□ -0.15
CLN3-245ENST00000636172 C20orf203Q8NBC4 194 aa14.13□□□□□ -0.15
CLN3-245ENST00000636172 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.12□□□□□ -0.15
CLN3-245ENST00000636172 IGKV2-29A2NJV5 120 aaPredicted RBP14.12□□□□□ -0.15
CLN3-245ENST00000636172 C3orf84H3BNL1 204 aa14.12□□□□□ -0.15
CLN3-245ENST00000636172 CASC10Q5T4H9 136 aa14.12□□□□□ -0.15
CLN3-245ENST00000636172 LINC00588Q9Y4M8 146 aa14.12□□□□□ -0.15
CLN3-245ENST00000636172 BTF3P20290 206 aaKnown RBP14.11□□□□□ -0.15
CLN3-245ENST00000636172 CCL18P55774 89 aa14.11□□□□□ -0.15
CLN3-245ENST00000636172 RPL39P62891 51 aaKnown RBP14.11□□□□□ -0.15
CLN3-245ENST00000636172 FAM19A2Q8N3H0 131 aa14.11□□□□□ -0.15
CLN3-245ENST00000636172 S100A6P06703 90 aa14.1□□□□□ -0.15
CLN3-245ENST00000636172 CHCHD5Q9BSY4 110 aa14.1□□□□□ -0.15
CLN3-245ENST00000636172 C2orf66Q6UXQ4 117 aa14.1□□□□□ -0.15
CLN3-245ENST00000636172 MRPS16Q9Y3D3 137 aaKnown RBP14.1□□□□□ -0.15
CLN3-245ENST00000636172 HBDP02042 147 aa14.09□□□□□ -0.15
CLN3-245ENST00000636172 GAGE6Q13070 117 aa14.09□□□□□ -0.15
CLN3-245ENST00000636172 LYSTQ99698 3801 aa14.09□□□□□ -0.15
CLN3-245ENST00000636172 CYSLTR1Q9Y271 337 aa14.09□□□□□ -0.15
CLN3-245ENST00000636172 RYR3Q15413 4870 aa14.08□□□□□ -0.16
CLN3-245ENST00000636172 TRAV8-6A0A0B4J262 113 aa14.08□□□□□ -0.16
CLN3-245ENST00000636172 WFDC10BQ8IUB3 73 aa14.08□□□□□ -0.16
CLN3-245ENST00000636172 TOMM6Q96B49 74 aa14.08□□□□□ -0.16
CLN3-245ENST00000636172 H7C423 109 aa14.07□□□□□ -0.16
CLN3-245ENST00000636172 UBE2L6O14933 153 aa14.07□□□□□ -0.16
CLN3-245ENST00000636172 G0S2P27469 103 aa14.07□□□□□ -0.16
CLN3-245ENST00000636172 TMEM18Q96B42 140 aa14.07□□□□□ -0.16
CLN3-245ENST00000636172 SNRPEP62304 92 aaKnown RBP14.06□□□□□ -0.16
CLN3-245ENST00000636172 PDZD11Q5EBL8 140 aa14.06□□□□□ -0.16
CLN3-245ENST00000636172 C5orf52A6NGY3 159 aa14.05□□□□□ -0.16
CLN3-245ENST00000636172 FGF6P10767 208 aa14.05□□□□□ -0.16
CLN3-245ENST00000636172 UBE2D4Q9Y2X8 147 aa14.05□□□□□ -0.16
CLN3-245ENST00000636172 HIST3H2BBQ8N257 126 aa14.05□□□□□ -0.16
CLN3-245ENST00000636172 Q8N3U1 123 aa14.05□□□□□ -0.16
CLN3-245ENST00000636172 UPK3BQ9BT76 320 aa14.05□□□□□ -0.16
CLN3-245ENST00000636172 TMEM262E9PQX1 116 aa14.04□□□□□ -0.16
CLN3-245ENST00000636172 MPV17L2Q567V2 206 aa14.04□□□□□ -0.16
CLN3-245ENST00000636172 MRPL52Q86TS9 123 aaKnown RBP14.04□□□□□ -0.16
CLN3-245ENST00000636172 UBE2DNLQ8IWF7 75 aa14.04□□□□□ -0.16
CLN3-245ENST00000636172 AMMECR1LQ6DCA0 310 aa14.03□□□□□ -0.16
CLN3-245ENST00000636172 TIMM21Q9BVV7 248 aa14.03□□□□□ -0.16
CLN3-245ENST00000636172 VPS13DQ5THJ4 4388 aa14.02□□□□□ -0.16
CLN3-245ENST00000636172 LINC01549A6NIU2 74 aa14.02□□□□□ -0.16
CLN3-245ENST00000636172 IGIPA6NJ69 53 aa14.02□□□□□ -0.16
CLN3-245ENST00000636172 SCGB3A1Q96QR1 104 aa14.02□□□□□ -0.16
CLN3-245ENST00000636172 SPANXA1Q9NS26 97 aa14.02□□□□□ -0.16
CLN3-245ENST00000636172 PYGO1Q9Y3Y4 419 aa14.02□□□□□ -0.16
CLN3-245ENST00000636172 DNAH1Q9P2D7 4330 aa14.01□□□□□ -0.17
CLN3-245ENST00000636172 PKIAP61925 76 aa14.01□□□□□ -0.17
CLN3-245ENST00000636172 RBX1P62877 108 aa14.01□□□□□ -0.17
CLN3-245ENST00000636172 Q8N976 141 aa14.01□□□□□ -0.17
CLN3-245ENST00000636172 FAM104AQ969W3 186 aa14.01□□□□□ -0.17
CLN3-245ENST00000636172 A0A087WX48 190 aa14□□□□□ -0.17
CLN3-245ENST00000636172 ZNF25P17030 456 aaPredicted RBP14□□□□□ -0.17
CLN3-245ENST00000636172 LINC00173Q6ZV60 143 aa14□□□□□ -0.17
CLN3-245ENST00000636172 ERASQ7Z444 233 aa14□□□□□ -0.17
CLN3-245ENST00000636172 CSDC2Q9Y534 153 aaKnown RBP14□□□□□ -0.17
CLN3-245ENST00000636172 IGLV4-60A0A075B6I1 120 aa14□□□□□ -0.17
CLN3-245ENST00000636172 A0A1B0GUV1 79 aa14□□□□□ -0.17
CLN3-245ENST00000636172 IFITM10A6NMD0 228 aa14□□□□□ -0.17
CLN3-245ENST00000636172 SIVA1O15304 175 aa14□□□□□ -0.17
CLN3-245ENST00000636172 LEPROTL1O95214 131 aa14□□□□□ -0.17
CLN3-245ENST00000636172 DNAH10OSP0CZ25 163 aa14□□□□□ -0.17
CLN3-245ENST00000636172 FABP4P15090 132 aa14□□□□□ -0.17
CLN3-245ENST00000636172 SMAGPQ0VAQ4 97 aa14□□□□□ -0.17
CLN3-245ENST00000636172 TIMM17AQ99595 171 aa14□□□□□ -0.17
CLN3-245ENST00000636172 OPRPNQ99935 248 aaPredicted RBP14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms