RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 RNF183Q96D59 192 aa10.19□□□□□ -0.78
CLN3-242ENST00000635958 J3QR89 54 aa10.18□□□□□ -0.78
CLN3-242ENST00000635958 NXPH4O95158 308 aa10.18□□□□□ -0.78
CLN3-242ENST00000635958 PRB2P02812 416 aaPredicted RBP10.18□□□□□ -0.78
CLN3-242ENST00000635958 ZNF415Q09FC8 603 aa10.18□□□□□ -0.78
CLN3-242ENST00000635958 PAPPA-AS1Q5QFB9 102 aa10.18□□□□□ -0.78
CLN3-242ENST00000635958 PTH2Q96A98 100 aa10.18□□□□□ -0.78
CLN3-242ENST00000635958 TOMM6Q96B49 74 aa10.18□□□□□ -0.78
CLN3-242ENST00000635958 MRPL35Q9NZE8 188 aaKnown RBP10.18□□□□□ -0.78
CLN3-242ENST00000635958 PHLDA3Q9Y5J5 127 aa10.18□□□□□ -0.78
CLN3-242ENST00000635958 X6R8D5 127 aa10.18□□□□□ -0.78
CLN3-242ENST00000635958 IGKV2D-26A0A0A0MRZ7 120 aa10.17□□□□□ -0.78
CLN3-242ENST00000635958 E9PLD3 99 aa10.17□□□□□ -0.78
CLN3-242ENST00000635958 SPRY2O43597 315 aa10.17□□□□□ -0.78
CLN3-242ENST00000635958 RRN3P1Q2M238 152 aa10.17□□□□□ -0.78
CLN3-242ENST00000635958 DEFB135Q30KP9 77 aa10.17□□□□□ -0.78
CLN3-242ENST00000635958 IL17DQ8TAD2 202 aa10.17□□□□□ -0.78
CLN3-242ENST00000635958 PHLDA1Q8WV24 401 aaPredicted RBP10.17□□□□□ -0.78
CLN3-242ENST00000635958 SPXQ9BT56 116 aa10.17□□□□□ -0.78
CLN3-242ENST00000635958 TP53TG1Q9Y2A0 90 aa10.17□□□□□ -0.78
CLN3-242ENST00000635958 PIK3CD-AS1Q5SR53 167 aa10.17□□□□□ -0.78
CLN3-242ENST00000635958 POM121L12Q8N7R1 296 aa10.17□□□□□ -0.78
CLN3-242ENST00000635958 C16orf74Q96GX8 76 aa10.17□□□□□ -0.78
CLN3-242ENST00000635958 PLAC8L1A1L4L8 177 aa10.16□□□□□ -0.78
CLN3-242ENST00000635958 GATA1P15976 413 aaPredicted RBP10.16□□□□□ -0.78
CLN3-242ENST00000635958 FXYD2P54710 66 aa10.16□□□□□ -0.78
CLN3-242ENST00000635958 SUMO2P61956 95 aaKnown RBP10.16□□□□□ -0.78
CLN3-242ENST00000635958 SCGB3A1Q96QR1 104 aa10.16□□□□□ -0.78
CLN3-242ENST00000635958 CHTOPQ9Y3Y2 248 aaKnown RBP10.16□□□□□ -0.78
CLN3-242ENST00000635958 A0A1B0GWB2 263 aa10.15□□□□□ -0.78
CLN3-242ENST00000635958 GAS8-AS1O95177 125 aa10.15□□□□□ -0.78
CLN3-242ENST00000635958 DAZ2Q13117 558 aaKnown RBP10.15□□□□□ -0.78
CLN3-242ENST00000635958 OR11H2Q8NH07 326 aa10.15□□□□□ -0.78
CLN3-242ENST00000635958 MYMXA0A1B0GTQ4 84 aa10.14□□□□□ -0.79
CLN3-242ENST00000635958 TMEM238LA0A1B0GVL6 79 aa10.14□□□□□ -0.79
CLN3-242ENST00000635958 A6NJY4 79 aa10.14□□□□□ -0.79
CLN3-242ENST00000635958 M0R2P5 195 aa10.14□□□□□ -0.79
CLN3-242ENST00000635958 OVOL2Q9BRP0 275 aa10.14□□□□□ -0.79
CLN3-242ENST00000635958 IGLL5B9A064 214 aa10.14□□□□□ -0.79
CLN3-242ENST00000635958 SCGB1A1P11684 91 aa10.14□□□□□ -0.79
CLN3-242ENST00000635958 C12orf74Q32Q52 190 aa10.14□□□□□ -0.79
CLN3-242ENST00000635958 SYT8Q8NBV8 401 aa10.14□□□□□ -0.79
CLN3-242ENST00000635958 NEXN-AS1Q8NBZ9 246 aa10.14□□□□□ -0.79
CLN3-242ENST00000635958 HIST1H4GQ99525 98 aa10.14□□□□□ -0.79
CLN3-242ENST00000635958 MIFP14174 115 aa10.13□□□□□ -0.79
CLN3-242ENST00000635958 ZNF876PQ49A33 203 aa10.13□□□□□ -0.79
CLN3-242ENST00000635958 RASL10AQ92737 203 aa10.13□□□□□ -0.79
CLN3-242ENST00000635958 NHP2Q9NX24 153 aaKnown RBP10.13□□□□□ -0.79
CLN3-242ENST00000635958 DEFB121Q5J5C9 76 aa10.12□□□□□ -0.79
CLN3-242ENST00000635958 SBSPONQ8IVN8 264 aa10.12□□□□□ -0.79
CLN3-242ENST00000635958 ZNF479Q96JC4 524 aa10.12□□□□□ -0.79
CLN3-242ENST00000635958 TRBV7-3A0A075B6L6 115 aa10.12□□□□□ -0.79
CLN3-242ENST00000635958 TCTAP57738 103 aa10.11□□□□□ -0.79
CLN3-242ENST00000635958 HERVK_113P61574 105 aa10.11□□□□□ -0.79
CLN3-242ENST00000635958 MAPKAPK5-AS1Q8N8E1 139 aa10.11□□□□□ -0.79
CLN3-242ENST00000635958 Q8NAQ8 132 aa10.11□□□□□ -0.79
CLN3-242ENST00000635958 TMEM141Q96I45 108 aa10.11□□□□□ -0.79
CLN3-242ENST00000635958 LYRM7Q5U5X0 104 aa10.1□□□□□ -0.79
CLN3-242ENST00000635958 TM2D3Q9BRN9 247 aa10.1□□□□□ -0.79
CLN3-242ENST00000635958 NOP10Q9NPE3 64 aaKnown RBP10.1□□□□□ -0.79
CLN3-242ENST00000635958 KIF25-AS1Q9Y6Z4 181 aa10.1□□□□□ -0.79
CLN3-242ENST00000635958 IGHV4-28A0A0C4DH34 117 aa10.1□□□□□ -0.79
CLN3-242ENST00000635958 C2orf66Q6UXQ4 117 aa10.1□□□□□ -0.79
CLN3-242ENST00000635958 TRAV26-2A0A0B4J265 109 aa10.09□□□□□ -0.79
CLN3-242ENST00000635958 A8MWV9 139 aa10.09□□□□□ -0.79
CLN3-242ENST00000635958 CRYGDP07320 174 aa10.09□□□□□ -0.79
CLN3-242ENST00000635958 LINC00315P59091 139 aa10.09□□□□□ -0.79
CLN3-242ENST00000635958 LINC00612Q8N6U2 182 aa10.09□□□□□ -0.79
CLN3-242ENST00000635958 NAA38Q9BRA0 125 aaKnown RBP10.09□□□□□ -0.79
CLN3-242ENST00000635958 JPT2Q9H910 190 aa10.09□□□□□ -0.79
CLN3-242ENST00000635958 CYSLTR1Q9Y271 337 aa10.09□□□□□ -0.79
CLN3-242ENST00000635958 RPL24P83731 157 aaKnown RBP10.08□□□□□ -0.8
CLN3-242ENST00000635958 Q6ZTI0 123 aa10.08□□□□□ -0.8
CLN3-242ENST00000635958 C14orf178Q8N769 122 aaPredicted RBP10.08□□□□□ -0.8
CLN3-242ENST00000635958 MRAPQ8TCY5 172 aa10.08□□□□□ -0.8
CLN3-242ENST00000635958 BAALCQ8WXS3 180 aa10.08□□□□□ -0.8
CLN3-242ENST00000635958 MRPL16Q9NX20 251 aaKnown RBP10.08□□□□□ -0.8
CLN3-242ENST00000635958 TRGV1A0A0A0MS02 117 aa10.07□□□□□ -0.8
CLN3-242ENST00000635958 LYRM9A8MSI8 78 aa10.07□□□□□ -0.8
CLN3-242ENST00000635958 VCYO14598 125 aa10.07□□□□□ -0.8
CLN3-242ENST00000635958 RS1O15537 224 aa10.07□□□□□ -0.8
CLN3-242ENST00000635958 SPATA25Q9BR10 227 aa10.07□□□□□ -0.8
CLN3-242ENST00000635958 RETNQ9HD89 108 aa10.07□□□□□ -0.8
CLN3-242ENST00000635958 GAGE13Q4V321 117 aa10.07□□□□□ -0.8
CLN3-242ENST00000635958 CFAP126Q5VTH2 177 aa10.07□□□□□ -0.8
CLN3-242ENST00000635958 TIMM17AQ99595 171 aa10.07□□□□□ -0.8
CLN3-242ENST00000635958 TTTY13Q9BZ97 58 aa10.07□□□□□ -0.8
CLN3-242ENST00000635958 PRSS29PA6NIE9 313 aa10.06□□□□□ -0.8
CLN3-242ENST00000635958 EMP1P54849 157 aa10.06□□□□□ -0.8
CLN3-242ENST00000635958 ATP6V0E2Q8NHE4 81 aa10.06□□□□□ -0.8
CLN3-242ENST00000635958 TENM3Q9P273 2699 aa10.06□□□□□ -0.8
CLN3-242ENST00000635958 PRKDCP78527 4128 aaKnown RBP10.06□□□□□ -0.8
CLN3-242ENST00000635958 TRBV6-5A0A0K0K1A5 114 aa10.05□□□□□ -0.8
CLN3-242ENST00000635958 MGPP08493 103 aa10.05□□□□□ -0.8
CLN3-242ENST00000635958 KIR2DL4Q99706 377 aa10.05□□□□□ -0.8
CLN3-242ENST00000635958 SIGMAR1Q99720 223 aa10.05□□□□□ -0.8
CLN3-242ENST00000635958 B9D2Q9BPU9 175 aa10.05□□□□□ -0.8
CLN3-242ENST00000635958 VCX2Q9H322 139 aa10.05□□□□□ -0.8
CLN3-242ENST00000635958 NACAE9PAV3 2078 aa10.05□□□□□ -0.8
CLN3-242ENST00000635958 A0A087WWL8 130 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 153.5 ms