RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 TRBV24-1A0A075B6N3 115 aa12.97□□□□□ -0.33
SQSTM1-216ENST00000626660 VCYO14598 125 aa12.97□□□□□ -0.33
SQSTM1-216ENST00000626660 PHOX2AO14813 284 aa12.97□□□□□ -0.33
SQSTM1-216ENST00000626660 TNFRSF6BO95407 300 aa12.97□□□□□ -0.33
SQSTM1-216ENST00000626660 POLR2KP53803 58 aaKnown RBP12.97□□□□□ -0.33
SQSTM1-216ENST00000626660 ATRAIDQ6UW56 229 aa12.97□□□□□ -0.33
SQSTM1-216ENST00000626660 DEFB104AQ8WTQ1 72 aa12.97□□□□□ -0.33
SQSTM1-216ENST00000626660 CHCHD7Q9BUK0 85 aa12.97□□□□□ -0.33
SQSTM1-216ENST00000626660 GNB1LQ9BYB4 327 aa12.97□□□□□ -0.33
SQSTM1-216ENST00000626660 TRBV27A0A0K0K1C4 114 aa12.96□□□□□ -0.33
SQSTM1-216ENST00000626660 APCSP02743 223 aa12.96□□□□□ -0.33
SQSTM1-216ENST00000626660 BTF3P20290 206 aaKnown RBP12.96□□□□□ -0.33
SQSTM1-216ENST00000626660 C6orf223Q8N319 242 aa12.96□□□□□ -0.33
SQSTM1-216ENST00000626660 KRTAP17-1Q9BYP8 105 aa12.96□□□□□ -0.33
SQSTM1-216ENST00000626660 UBE2L6O14933 153 aa12.95□□□□□ -0.34
SQSTM1-216ENST00000626660 MT-ND6P03923 174 aa12.95□□□□□ -0.34
SQSTM1-216ENST00000626660 ELOBQ15370 118 aa12.95□□□□□ -0.34
SQSTM1-216ENST00000626660 LAMTOR2Q9Y2Q5 125 aa12.95□□□□□ -0.34
SQSTM1-216ENST00000626660 TGIF2-C20orf24A0A0A6YYL0 155 aa12.94□□□□□ -0.34
SQSTM1-216ENST00000626660 NPYP01303 97 aa12.94□□□□□ -0.34
SQSTM1-216ENST00000626660 FCER1GP30273 86 aa12.94□□□□□ -0.34
SQSTM1-216ENST00000626660 RPL32P62910 135 aaKnown RBP12.94□□□□□ -0.34
SQSTM1-216ENST00000626660 GAGE6Q13070 117 aa12.94□□□□□ -0.34
SQSTM1-216ENST00000626660 KIR2DL4Q99706 377 aa12.94□□□□□ -0.34
SQSTM1-216ENST00000626660 SMCO4Q9NRQ5 59 aa12.94□□□□□ -0.34
SQSTM1-216ENST00000626660 TSHBP01222 138 aa12.93□□□□□ -0.34
SQSTM1-216ENST00000626660 Q8N3U1 123 aa12.93□□□□□ -0.34
SQSTM1-216ENST00000626660 SMIM2Q9BVW6 85 aa12.93□□□□□ -0.34
SQSTM1-216ENST00000626660 TCAPO15273 167 aa12.92□□□□□ -0.34
SQSTM1-216ENST00000626660 NFE4Q86UQ8 179 aa12.92□□□□□ -0.34
SQSTM1-216ENST00000626660 IBA57-AS1B1ANH7 110 aa12.91□□□□□ -0.34
SQSTM1-216ENST00000626660 LAGE3Q14657 143 aa12.91□□□□□ -0.34
SQSTM1-216ENST00000626660 MPV17L2Q567V2 206 aa12.91□□□□□ -0.34
SQSTM1-216ENST00000626660 CBLN2Q8IUK8 224 aa12.91□□□□□ -0.34
SQSTM1-216ENST00000626660 MAP1LC3AQ9H492 121 aa12.91□□□□□ -0.34
SQSTM1-216ENST00000626660 FABP9Q0Z7S8 132 aa12.9□□□□□ -0.34
SQSTM1-216ENST00000626660 KIAA1644Q3SXP7 199 aa12.9□□□□□ -0.34
SQSTM1-216ENST00000626660 MRPL18Q9H0U6 180 aaKnown RBP12.9□□□□□ -0.34
SQSTM1-216ENST00000626660 KLK12Q9UKR0 248 aa12.9□□□□□ -0.34
SQSTM1-216ENST00000626660 H7C423 109 aa12.89□□□□□ -0.35
SQSTM1-216ENST00000626660 ANGP03950 147 aaKnown RBP12.89□□□□□ -0.35
SQSTM1-216ENST00000626660 RBX1P62877 108 aa12.89□□□□□ -0.35
SQSTM1-216ENST00000626660 AMMECR1LQ6DCA0 310 aa12.89□□□□□ -0.35
SQSTM1-216ENST00000626660 LINC00336Q6ZUF6 198 aa12.89□□□□□ -0.35
SQSTM1-216ENST00000626660 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.88□□□□□ -0.35
SQSTM1-216ENST00000626660 TRAV8-3A0A0A6YYJ7 113 aa12.88□□□□□ -0.35
SQSTM1-216ENST00000626660 IGKV2-29A2NJV5 120 aaPredicted RBP12.88□□□□□ -0.35
SQSTM1-216ENST00000626660 RTL8CO15255 209 aa12.88□□□□□ -0.35
SQSTM1-216ENST00000626660 Q8N976 141 aa12.88□□□□□ -0.35
SQSTM1-216ENST00000626660 Q9HAA7 133 aa12.88□□□□□ -0.35
SQSTM1-216ENST00000626660 TRAPPC1Q9Y5R8 145 aa12.88□□□□□ -0.35
SQSTM1-216ENST00000626660 LOC389332A0A1B0GUA5 103 aa12.87□□□□□ -0.35
SQSTM1-216ENST00000626660 ESDP10768 282 aa12.87□□□□□ -0.35
SQSTM1-216ENST00000626660 RAB5AP20339 215 aa12.87□□□□□ -0.35
SQSTM1-216ENST00000626660 YPEL4Q96NS1 127 aa12.87□□□□□ -0.35
SQSTM1-216ENST00000626660 A0A1B0GUV1 79 aa12.86□□□□□ -0.35
SQSTM1-216ENST00000626660 PRSS47A8MTI9 375 aa12.86□□□□□ -0.35
SQSTM1-216ENST00000626660 CRPP02741 224 aa12.86□□□□□ -0.35
SQSTM1-216ENST00000626660 RNASEKQ6P5S7 137 aaKnown RBP12.86□□□□□ -0.35
SQSTM1-216ENST00000626660 UBE2WQ96B02 151 aa12.86□□□□□ -0.35
SQSTM1-216ENST00000626660 FGF6P10767 208 aa12.85□□□□□ -0.35
SQSTM1-216ENST00000626660 SMAGPQ0VAQ4 97 aa12.85□□□□□ -0.35
SQSTM1-216ENST00000626660 Q0VG73 95 aa12.85□□□□□ -0.35
SQSTM1-216ENST00000626660 TMEM18Q96B42 140 aa12.85□□□□□ -0.35
SQSTM1-216ENST00000626660 RMI2Q96E14 147 aa12.85□□□□□ -0.35
SQSTM1-216ENST00000626660 Q8N8P6 123 aa12.84□□□□□ -0.35
SQSTM1-216ENST00000626660 TMEM101Q96IK0 257 aa12.84□□□□□ -0.35
SQSTM1-216ENST00000626660 TM2D2Q9BX73 214 aa12.84□□□□□ -0.35
SQSTM1-216ENST00000626660 NXT2Q9NPJ8 142 aaKnown RBP12.84□□□□□ -0.35
SQSTM1-216ENST00000626660 PRSS29PA6NIE9 313 aa12.83□□□□□ -0.36
SQSTM1-216ENST00000626660 ZNF25P17030 456 aaPredicted RBP12.83□□□□□ -0.36
SQSTM1-216ENST00000626660 ALKBH7Q9BT30 221 aaPredicted RBP12.83□□□□□ -0.36
SQSTM1-216ENST00000626660 IGLV4-60A0A075B6I1 120 aa12.82□□□□□ -0.36
SQSTM1-216ENST00000626660 PSCAO43653 123 aa12.82□□□□□ -0.36
SQSTM1-216ENST00000626660 LINC00269Q8N2A0 174 aa12.82□□□□□ -0.36
SQSTM1-216ENST00000626660 C20orf203Q8NBC4 194 aa12.82□□□□□ -0.36
SQSTM1-216ENST00000626660 DGAT2L7PQ6IED9 249 aa12.81□□□□□ -0.36
SQSTM1-216ENST00000626660 Q6ZRN7 208 aaPredicted RBP12.81□□□□□ -0.36
SQSTM1-216ENST00000626660 OR5A1Q8NGJ0 315 aa12.81□□□□□ -0.36
SQSTM1-216ENST00000626660 COX11Q9Y6N1 276 aa12.81□□□□□ -0.36
SQSTM1-216ENST00000626660 DNAH10Q8IVF4 4471 aa12.81□□□□□ -0.36
SQSTM1-216ENST00000626660 K7EMI3 77 aa12.8□□□□□ -0.36
SQSTM1-216ENST00000626660 MIAQ16674 131 aa12.8□□□□□ -0.36
SQSTM1-216ENST00000626660 CLPSL2Q6UWE3 100 aa12.8□□□□□ -0.36
SQSTM1-216ENST00000626660 ENHOQ6UWT2 76 aa12.8□□□□□ -0.36
SQSTM1-216ENST00000626660 MRPL52Q86TS9 123 aaKnown RBP12.8□□□□□ -0.36
SQSTM1-216ENST00000626660 PRSS3P2Q8NHM4 247 aa12.8□□□□□ -0.36
SQSTM1-216ENST00000626660 PRR34Q9NV39 138 aa12.8□□□□□ -0.36
SQSTM1-216ENST00000626660 IGKV2D-24A0A075B6R9 120 aa12.79□□□□□ -0.36
SQSTM1-216ENST00000626660 IFI27P40305 119 aaPredicted RBP12.79□□□□□ -0.36
SQSTM1-216ENST00000626660 REG3AQ06141 175 aa12.79□□□□□ -0.36
SQSTM1-216ENST00000626660 ORMDL2Q53FV1 153 aa12.79□□□□□ -0.36
SQSTM1-216ENST00000626660 C1orf43Q9BWL3 253 aa12.79□□□□□ -0.36
SQSTM1-216ENST00000626660 DNAH2Q9P225 4427 aa12.78□□□□□ -0.36
SQSTM1-216ENST00000626660 TNP2Q05952 138 aa12.78□□□□□ -0.36
SQSTM1-216ENST00000626660 S100A1P23297 94 aa12.77□□□□□ -0.37
SQSTM1-216ENST00000626660 TIMM21Q9BVV7 248 aa12.77□□□□□ -0.37
SQSTM1-216ENST00000626660 FRAS1Q86XX4 4008 aa12.77□□□□□ -0.37
SQSTM1-216ENST00000626660 SCO1O75880 301 aa12.76□□□□□ -0.37
SQSTM1-216ENST00000626660 RPL39P62891 51 aaKnown RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms