RNA–Protein interactions for RNA: ENST00000621526.4

CPNE3-211, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 279 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-211ENST00000621526 RBM38Q9H0Z9 239 aaKnown RBP1.28□□□□□ -2.2
CPNE3-211ENST00000621526 GSKIPQ9P0R6 139 aa1.28□□□□□ -2.2
CPNE3-211ENST00000621526 IGKV3OR2-268A0A0C4DH90 116 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 FAM25AB3EWG3 89 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 FAM25CB3EWG5 89 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 FAM25GB3EWG6 89 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 H3BVH4 76 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 L7N2F9 121 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 M0QXV9 152 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 COX7A2LO14548 114 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 SLC25A20O43772 301 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 CST7O76096 145 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 NCR2O95944 276 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 CXCL1P09341 107 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 SMIM17P0DL12 118 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 MALP21145 153 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 XCL1P47992 114 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 VAMP2P63027 116 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 UBE2L3P68036 154 aaKnown RBP1.27□□□□□ -2.21
CPNE3-211ENST00000621526 BAXQ07812 192 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 COTL1Q14019 142 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 ZNF56Q15929 161 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 LINC01559Q495D7 138 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 KHDC3LQ587J8 217 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 AMMECR1LQ6DCA0 310 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 FAAP20Q6NZ36 180 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 FAM19A2Q8N3H0 131 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 C5orf17Q8NAS9 161 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 SMIM4Q8WVI0 70 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 SGK494Q96LW2 274 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 NPCDR1Q9BY65 106 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 KRTAP2-2Q9BYT5 123 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 KRTAP2-1Q9BYU5 128 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 NIT2Q9NQR4 276 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 KCNIP2Q9NS61 270 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 TP73-AS1Q9UF72 201 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 EPDR1Q9UM22 224 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 ZFP30Q9Y2G7 519 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 UBE2D4Q9Y2X8 147 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 C22orf24Q9Y442 160 aa1.27□□□□□ -2.21
CPNE3-211ENST00000621526 C9orf170A2RU37 121 aa1.26□□□□□ -2.21
CPNE3-211ENST00000621526 GRIFINA4D1Z8 144 aa1.26□□□□□ -2.21
CPNE3-211ENST00000621526 C17orf112F2Z3M2 114 aa1.26□□□□□ -2.21
CPNE3-211ENST00000621526 SNAI2O43623 268 aa1.26□□□□□ -2.21
CPNE3-211ENST00000621526 MT2AP02795 61 aa1.26□□□□□ -2.21
CPNE3-211ENST00000621526 OR5AL1P0C617 328 aa1.26□□□□□ -2.21
CPNE3-211ENST00000621526 PVALBP20472 110 aaPredicted RBP1.26□□□□□ -2.21
CPNE3-211ENST00000621526 KRTAP5-9P26371 169 aa1.26□□□□□ -2.21
CPNE3-211ENST00000621526 FAUP35544 74 aaKnown RBP1.26□□□□□ -2.21
CPNE3-211ENST00000621526 BCAP31P51572 246 aa1.26□□□□□ -2.21
CPNE3-211ENST00000621526 SUMO1P63165 101 aaKnown RBP1.26□□□□□ -2.21
CPNE3-211ENST00000621526 PPP1R1AQ13522 171 aa1.26□□□□□ -2.21
CPNE3-211ENST00000621526 RASL11AQ6T310 242 aa1.26□□□□□ -2.21
CPNE3-211ENST00000621526 FAM19A5Q7Z5A7 132 aaPredicted RBP1.26□□□□□ -2.21
CPNE3-211ENST00000621526 KRTAP13-1Q8IUC0 172 aa1.26□□□□□ -2.21
CPNE3-211ENST00000621526 TMEM252Q8N6L7 170 aa1.26□□□□□ -2.21
CPNE3-211ENST00000621526 OR10D4PQ8NGN7 298 aa1.26□□□□□ -2.21
CPNE3-211ENST00000621526 PLEKHB2Q96CS7 222 aa1.26□□□□□ -2.21
CPNE3-211ENST00000621526 TMEM101Q96IK0 257 aa1.26□□□□□ -2.21
CPNE3-211ENST00000621526 BTF3L4Q96K17 158 aa1.26□□□□□ -2.21
CPNE3-211ENST00000621526 PACRGQ96M98 296 aaPredicted RBP1.26□□□□□ -2.21
CPNE3-211ENST00000621526 GNB1LQ9BYB4 327 aa1.26□□□□□ -2.21
CPNE3-211ENST00000621526 SMDT1Q9H4I9 107 aa1.26□□□□□ -2.21
CPNE3-211ENST00000621526 GEMIN7Q9H840 131 aaKnown RBP1.26□□□□□ -2.21
CPNE3-211ENST00000621526 CDC42SE2Q9NRR3 84 aa1.26□□□□□ -2.21
CPNE3-211ENST00000621526 MCUBQ9NWR8 336 aa1.26□□□□□ -2.21
CPNE3-211ENST00000621526 CSDC2Q9Y534 153 aaKnown RBP1.26□□□□□ -2.21
CPNE3-211ENST00000621526 TRBV30A0A0K0K1B3 111 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 UBE2L5PA0A1B0GUS4 154 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 A0A1W2PPV4 95 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 NDUFC2-KCTD14E9PQ53 114 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 M0R036 132 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 NDUFA1O15239 70 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 UPK1BO75841 260 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 NTF3P20783 257 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 TGFBR1P36897 503 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 CTRLP40313 264 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 NKX2-5P52952 324 aaPredicted RBP1.25□□□□□ -2.21
CPNE3-211ENST00000621526 AP3S2P59780 193 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 RPS20P60866 119 aaKnown RBP1.25□□□□□ -2.21
CPNE3-211ENST00000621526 VBP1P61758 197 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 GNG5P63218 68 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 IL15RAQ13261 267 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 GAGE2EQ4V326 116 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 C9orf129Q5T035 196 aaKnown RBP1.25□□□□□ -2.21
CPNE3-211ENST00000621526 SPANXN1Q5VSR9 72 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 RNASEKQ6P5S7 137 aaKnown RBP1.25□□□□□ -2.21
CPNE3-211ENST00000621526 LYZL1Q6UWQ5 148 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 UNQ6190/PRO20217Q6UXQ8 127 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 SSBP3-AS1Q7Z2R9 100 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 MRPL52Q86TS9 123 aaKnown RBP1.25□□□□□ -2.21
CPNE3-211ENST00000621526 STX12Q86Y82 276 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 Q8N377 158 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 NKX6-2Q9C056 277 aaPredicted RBP1.25□□□□□ -2.21
CPNE3-211ENST00000621526 WDR61Q9GZS3 305 aaKnown RBP1.25□□□□□ -2.21
CPNE3-211ENST00000621526 GAGE2DQ9UEU5 116 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 RAB26Q9ULW5 256 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 ARL2-SNX15V9GYD0 113 aa1.25□□□□□ -2.21
CPNE3-211ENST00000621526 A0A1W2PRE2 83 aa1.24□□□□□ -2.21
CPNE3-211ENST00000621526 ZNF727A8MUV8 499 aa1.24□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms