RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 A8MZ25 164 aa14.3□□□□□ -0.12
PDLIM3-212ENST00000620787 Q6ZSV7 163 aa14.3□□□□□ -0.12
PDLIM3-212ENST00000620787 TINCRA0A1B0GVN0 87 aa14.29□□□□□ -0.12
PDLIM3-212ENST00000620787 H7C423 109 aa14.29□□□□□ -0.12
PDLIM3-212ENST00000620787 Q9UF83 564 aa14.29□□□□□ -0.12
PDLIM3-212ENST00000620787 C2orf82Q6UX34 121 aa14.29□□□□□ -0.12
PDLIM3-212ENST00000620787 CCL19Q99731 98 aa14.29□□□□□ -0.12
PDLIM3-212ENST00000620787 CHCHD7Q9BUK0 85 aa14.29□□□□□ -0.12
PDLIM3-212ENST00000620787 TNFRSF18Q9Y5U5 241 aa14.28□□□□□ -0.12
PDLIM3-212ENST00000620787 SVIPQ8NHG7 77 aa14.27□□□□□ -0.12
PDLIM3-212ENST00000620787 UBE2D4Q9Y2X8 147 aa14.27□□□□□ -0.12
PDLIM3-212ENST00000620787 CRYBG3Q68DQ2 2970 aa14.27□□□□□ -0.12
PDLIM3-212ENST00000620787 IGHV4-59P01825 116 aa14.27□□□□□ -0.13
PDLIM3-212ENST00000620787 HTN1P15515 57 aa14.27□□□□□ -0.13
PDLIM3-212ENST00000620787 NDUFV3P56181 108 aaKnown RBP14.27□□□□□ -0.13
PDLIM3-212ENST00000620787 NPC2P61916 151 aa14.27□□□□□ -0.13
PDLIM3-212ENST00000620787 TMEM89A2RUT3 159 aa14.26□□□□□ -0.13
PDLIM3-212ENST00000620787 GAGE5Q13069 117 aa14.26□□□□□ -0.13
PDLIM3-212ENST00000620787 GAGE6Q13070 117 aa14.26□□□□□ -0.13
PDLIM3-212ENST00000620787 DUX5Q96PT3 197 aa14.26□□□□□ -0.13
PDLIM3-212ENST00000620787 SPTBN4Q9H254 2564 aa14.26□□□□□ -0.13
PDLIM3-212ENST00000620787 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.26□□□□□ -0.13
PDLIM3-212ENST00000620787 KNCNA6PVL3 124 aa14.26□□□□□ -0.13
PDLIM3-212ENST00000620787 Q6Q795 121 aa14.26□□□□□ -0.13
PDLIM3-212ENST00000620787 Q6ZSN1 163 aa14.26□□□□□ -0.13
PDLIM3-212ENST00000620787 TMEM61Q8N0U2 210 aa14.26□□□□□ -0.13
PDLIM3-212ENST00000620787 SPANXA1Q9NS26 97 aa14.26□□□□□ -0.13
PDLIM3-212ENST00000620787 H3BT86 120 aa14.25□□□□□ -0.13
PDLIM3-212ENST00000620787 CLEC2BQ92478 149 aa14.25□□□□□ -0.13
PDLIM3-212ENST00000620787 PRM2P04554 102 aa14.25□□□□□ -0.13
PDLIM3-212ENST00000620787 COX6CP09669 75 aa14.25□□□□□ -0.13
PDLIM3-212ENST00000620787 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.24□□□□□ -0.13
PDLIM3-212ENST00000620787 IGKV2-29A2NJV5 120 aaPredicted RBP14.24□□□□□ -0.13
PDLIM3-212ENST00000620787 ATP5J2P56134 94 aa14.24□□□□□ -0.13
PDLIM3-212ENST00000620787 C15orf53Q8NAA6 179 aa14.24□□□□□ -0.13
PDLIM3-212ENST00000620787 GNLYP22749 145 aa14.24□□□□□ -0.13
PDLIM3-212ENST00000620787 LST1O00453 97 aa14.23□□□□□ -0.13
PDLIM3-212ENST00000620787 DEFB112Q30KQ8 113 aa14.23□□□□□ -0.13
PDLIM3-212ENST00000620787 LINC00467Q9BRT7 94 aa14.23□□□□□ -0.13
PDLIM3-212ENST00000620787 YAE1D1Q9NRH1 226 aa14.23□□□□□ -0.13
PDLIM3-212ENST00000620787 SS18L2Q9UHA2 77 aa14.23□□□□□ -0.13
PDLIM3-212ENST00000620787 CSPG4Q6UVK1 2322 aa14.23□□□□□ -0.13
PDLIM3-212ENST00000620787 MAP1AP78559 2803 aaPredicted RBP14.22□□□□□ -0.13
PDLIM3-212ENST00000620787 TIMM17BO60830 172 aa14.22□□□□□ -0.13
PDLIM3-212ENST00000620787 HOXD3P31249 432 aaPredicted RBP14.22□□□□□ -0.13
PDLIM3-212ENST00000620787 IFITM1P13164 125 aa14.22□□□□□ -0.13
PDLIM3-212ENST00000620787 CELSR2Q9HCU4 2923 aa14.21□□□□□ -0.13
PDLIM3-212ENST00000620787 RBMY1BA6NDE4 496 aaKnown RBP14.21□□□□□ -0.13
PDLIM3-212ENST00000620787 RBMY1EA6NEQ0 496 aaKnown RBP14.21□□□□□ -0.13
PDLIM3-212ENST00000620787 B5MCH6 92 aa14.21□□□□□ -0.13
PDLIM3-212ENST00000620787 RBMY1DP0C7P1 496 aaKnown RBP14.21□□□□□ -0.13
PDLIM3-212ENST00000620787 A8MTW9 85 aa14.2□□□□□ -0.14
PDLIM3-212ENST00000620787 TTC32Q5I0X7 151 aa14.2□□□□□ -0.14
PDLIM3-212ENST00000620787 DUX3Q96PT4 197 aa14.2□□□□□ -0.14
PDLIM3-212ENST00000620787 B4DSR2 109 aa14.2□□□□□ -0.14
PDLIM3-212ENST00000620787 DEFB131AP59861 70 aa14.19□□□□□ -0.14
PDLIM3-212ENST00000620787 DEFB121Q5J5C9 76 aa14.19□□□□□ -0.14
PDLIM3-212ENST00000620787 PIK3CD-AS1Q5SR53 167 aa14.19□□□□□ -0.14
PDLIM3-212ENST00000620787 DAND5Q8N907 189 aa14.19□□□□□ -0.14
PDLIM3-212ENST00000620787 CDKN2A-AS1Q9UH64 79 aa14.19□□□□□ -0.14
PDLIM3-212ENST00000620787 IGHV3-38A0A0C4DH36 116 aa14.18□□□□□ -0.14
PDLIM3-212ENST00000620787 NDUFA1O15239 70 aa14.18□□□□□ -0.14
PDLIM3-212ENST00000620787 ZNF415Q09FC8 603 aa14.18□□□□□ -0.14
PDLIM3-212ENST00000620787 CHD8Q9HCK8 2581 aa14.17□□□□□ -0.14
PDLIM3-212ENST00000620787 IGLV5-45A0A087WSX0 123 aa14.17□□□□□ -0.14
PDLIM3-212ENST00000620787 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.17□□□□□ -0.14
PDLIM3-212ENST00000620787 TMEM101Q96IK0 257 aa14.17□□□□□ -0.14
PDLIM3-212ENST00000620787 ITPR1Q14643 2758 aa14.17□□□□□ -0.14
PDLIM3-212ENST00000620787 CCDC179H3BU77 68 aa14.17□□□□□ -0.14
PDLIM3-212ENST00000620787 MRPL23Q16540 153 aaKnown RBP14.17□□□□□ -0.14
PDLIM3-212ENST00000620787 CITED2Q99967 270 aaPredicted RBP14.17□□□□□ -0.14
PDLIM3-212ENST00000620787 FAM240AA0A1B0GVK7 77 aa14.16□□□□□ -0.14
PDLIM3-212ENST00000620787 TIRAPP58753 221 aa14.16□□□□□ -0.14
PDLIM3-212ENST00000620787 GAGE12JA6NER3 117 aa14.16□□□□□ -0.14
PDLIM3-212ENST00000620787 GAGE7O76087 117 aa14.16□□□□□ -0.14
PDLIM3-212ENST00000620787 IGHV3-53P01767 116 aa14.16□□□□□ -0.14
PDLIM3-212ENST00000620787 GAGE12FP0CL80 117 aa14.16□□□□□ -0.14
PDLIM3-212ENST00000620787 GAGE12GP0CL81 117 aa14.16□□□□□ -0.14
PDLIM3-212ENST00000620787 GAGE12IP0CL82 117 aa14.16□□□□□ -0.14
PDLIM3-212ENST00000620787 GAGE4Q13068 117 aa14.16□□□□□ -0.14
PDLIM3-212ENST00000620787 DNAJC30Q96LL9 226 aa14.15□□□□□ -0.14
PDLIM3-212ENST00000620787 NCOR2Q9Y618 2525 aa14.15□□□□□ -0.14
PDLIM3-212ENST00000620787 C11orf72Q8NBR9 251 aa14.15□□□□□ -0.14
PDLIM3-212ENST00000620787 UBE2E2Q96LR5 201 aa14.15□□□□□ -0.14
PDLIM3-212ENST00000620787 SPG11Q96JI7 2443 aa14.14□□□□□ -0.15
PDLIM3-212ENST00000620787 COX6A2Q02221 97 aa14.14□□□□□ -0.15
PDLIM3-212ENST00000620787 SLURP1P55000 103 aa14.12□□□□□ -0.15
PDLIM3-212ENST00000620787 LINC00308Q8TCZ7 52 aa14.12□□□□□ -0.15
PDLIM3-212ENST00000620787 IGHV3OR16-12A0A075B7B8 117 aa14.11□□□□□ -0.15
PDLIM3-212ENST00000620787 IGLV5-39A0A0G2JS06 123 aa14.11□□□□□ -0.15
PDLIM3-212ENST00000620787 BEAN1Q3B7T3 259 aa14.11□□□□□ -0.15
PDLIM3-212ENST00000620787 ZNF702PQ9H963 129 aa14.11□□□□□ -0.15
PDLIM3-212ENST00000620787 DEFB136Q30KP8 78 aa14.11□□□□□ -0.15
PDLIM3-212ENST00000620787 C18orf65Q6ZTR6 163 aa14.11□□□□□ -0.15
PDLIM3-212ENST00000620787 RS1O15537 224 aa14.1□□□□□ -0.15
PDLIM3-212ENST00000620787 CIRBPQ14011 172 aaKnown RBP14.1□□□□□ -0.15
PDLIM3-212ENST00000620787 Q9H8V8 135 aa14.1□□□□□ -0.15
PDLIM3-212ENST00000620787 LINC01587Q99440 93 aa14.1□□□□□ -0.15
PDLIM3-212ENST00000620787 VPREB3Q9UKI3 123 aa14.09□□□□□ -0.15
PDLIM3-212ENST00000620787 LINC00242Q5T6M2 205 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms