RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 CLRN3Q8NCR9 226 aa12.4□□□□□ -0.42
CCDC28A-203ENST00000617445 UBE2L6O14933 153 aa12.39□□□□□ -0.43
CCDC28A-203ENST00000617445 CLPSL2Q6UWE3 100 aa12.39□□□□□ -0.43
CCDC28A-203ENST00000617445 TEX261Q6UWH6 196 aa12.39□□□□□ -0.43
CCDC28A-203ENST00000617445 FAM231DQ6ZW35 169 aa12.39□□□□□ -0.43
CCDC28A-203ENST00000617445 EIF5A2Q9GZV4 153 aaKnown RBP12.39□□□□□ -0.43
CCDC28A-203ENST00000617445 A8MWL6 223 aa12.38□□□□□ -0.43
CCDC28A-203ENST00000617445 PRSS1P07477 247 aa12.38□□□□□ -0.43
CCDC28A-203ENST00000617445 C20orf203Q8NBC4 194 aa12.38□□□□□ -0.43
CCDC28A-203ENST00000617445 DEFB104AQ8WTQ1 72 aa12.38□□□□□ -0.43
CCDC28A-203ENST00000617445 FAM210AQ96ND0 272 aa12.38□□□□□ -0.43
CCDC28A-203ENST00000617445 MYCBP2O75592 4640 aa12.37□□□□□ -0.43
CCDC28A-203ENST00000617445 GATCO43716 136 aaKnown RBP12.37□□□□□ -0.43
CCDC28A-203ENST00000617445 AMTP48728 403 aa12.37□□□□□ -0.43
CCDC28A-203ENST00000617445 GATD1Q8NB37 220 aa12.37□□□□□ -0.43
CCDC28A-203ENST00000617445 CIRBP-AS1Q8TBR5 109 aa12.37□□□□□ -0.43
CCDC28A-203ENST00000617445 CT83Q5H943 113 aa12.36□□□□□ -0.43
CCDC28A-203ENST00000617445 C9orf163Q8N9P6 203 aa12.36□□□□□ -0.43
CCDC28A-203ENST00000617445 GTSF1Q8WW33 167 aa12.36□□□□□ -0.43
CCDC28A-203ENST00000617445 IGLV4-60A0A075B6I1 120 aa12.35□□□□□ -0.43
CCDC28A-203ENST00000617445 NCR2O95944 276 aa12.35□□□□□ -0.43
CCDC28A-203ENST00000617445 FOXA3P55318 350 aaPredicted RBP12.35□□□□□ -0.43
CCDC28A-203ENST00000617445 CEBPGP53567 150 aa12.34□□□□□ -0.43
CCDC28A-203ENST00000617445 IGLV10-54A0A075B6I4 117 aa12.33□□□□□ -0.44
CCDC28A-203ENST00000617445 H7C423 109 aa12.33□□□□□ -0.44
CCDC28A-203ENST00000617445 BORCS7Q96B45 105 aa12.33□□□□□ -0.44
CCDC28A-203ENST00000617445 HERC1Q15751 4861 aa12.32□□□□□ -0.44
CCDC28A-203ENST00000617445 TRAV26-2A0A0B4J265 109 aa12.32□□□□□ -0.44
CCDC28A-203ENST00000617445 CNBPP62633 177 aaKnown RBP12.32□□□□□ -0.44
CCDC28A-203ENST00000617445 SMIM7Q9BQ49 75 aa12.32□□□□□ -0.44
CCDC28A-203ENST00000617445 FAM231BA6NCW3 169 aa12.31□□□□□ -0.44
CCDC28A-203ENST00000617445 J3QL48 77 aa12.31□□□□□ -0.44
CCDC28A-203ENST00000617445 SRP19P09132 144 aaKnown RBP12.31□□□□□ -0.44
CCDC28A-203ENST00000617445 GFRA4Q9GZZ7 299 aa12.31□□□□□ -0.44
CCDC28A-203ENST00000617445 AP5S1Q9NUS5 200 aa12.31□□□□□ -0.44
CCDC28A-203ENST00000617445 ZNF727A8MUV8 499 aa12.3□□□□□ -0.44
CCDC28A-203ENST00000617445 KRTAP29-1A8MX34 341 aaPredicted RBP12.3□□□□□ -0.44
CCDC28A-203ENST00000617445 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.29□□□□□ -0.44
CCDC28A-203ENST00000617445 hDV102S1A0JD36 115 aa12.29□□□□□ -0.44
CCDC28A-203ENST00000617445 SDHAF1A6NFY7 115 aa12.29□□□□□ -0.44
CCDC28A-203ENST00000617445 AMMECR1LQ6DCA0 310 aa12.29□□□□□ -0.44
CCDC28A-203ENST00000617445 CFAP161Q6P656 301 aa12.29□□□□□ -0.44
CCDC28A-203ENST00000617445 SDIM1Q6ZPB5 146 aa12.29□□□□□ -0.44
CCDC28A-203ENST00000617445 LINC01551Q86U37 167 aa12.29□□□□□ -0.44
CCDC28A-203ENST00000617445 TSKUQ8WUA8 353 aa12.29□□□□□ -0.44
CCDC28A-203ENST00000617445 RPL39LQ96EH5 51 aaKnown RBP12.29□□□□□ -0.44
CCDC28A-203ENST00000617445 TRBV6-5A0A0K0K1A5 114 aa12.28□□□□□ -0.44
CCDC28A-203ENST00000617445 A0A1B0GUT8 65 aa12.28□□□□□ -0.44
CCDC28A-203ENST00000617445 APCSP02743 223 aa12.28□□□□□ -0.44
CCDC28A-203ENST00000617445 OSTCQ9NRP0 149 aa12.28□□□□□ -0.44
CCDC28A-203ENST00000617445 I3L3M4 83 aa12.27□□□□□ -0.45
CCDC28A-203ENST00000617445 KRTAP10-4P60372 401 aaPredicted RBP12.27□□□□□ -0.45
CCDC28A-203ENST00000617445 FAM74A3Q4VXF1 159 aa12.27□□□□□ -0.45
CCDC28A-203ENST00000617445 SMDT1Q9H4I9 107 aa12.27□□□□□ -0.45
CCDC28A-203ENST00000617445 HIGD1CA8MV81 97 aa12.26□□□□□ -0.45
CCDC28A-203ENST00000617445 ZNF25P17030 456 aaPredicted RBP12.26□□□□□ -0.45
CCDC28A-203ENST00000617445 PMCHP20382 165 aa12.26□□□□□ -0.45
CCDC28A-203ENST00000617445 PEA15Q15121 130 aa12.26□□□□□ -0.45
CCDC28A-203ENST00000617445 TMEM191AQ9H0A3 160 aa12.26□□□□□ -0.45
CCDC28A-203ENST00000617445 RNASEKQ6P5S7 137 aaKnown RBP12.25□□□□□ -0.45
CCDC28A-203ENST00000617445 ST20Q9HBF5 79 aa12.25□□□□□ -0.45
CCDC28A-203ENST00000617445 IGHV3-64A0A075B6Q5 118 aa12.24□□□□□ -0.45
CCDC28A-203ENST00000617445 FGF6P10767 208 aa12.24□□□□□ -0.45
CCDC28A-203ENST00000617445 CIRBPQ14011 172 aaKnown RBP12.24□□□□□ -0.45
CCDC28A-203ENST00000617445 TMEM241Q24JQ0 296 aa12.24□□□□□ -0.45
CCDC28A-203ENST00000617445 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.23□□□□□ -0.45
CCDC28A-203ENST00000617445 IGKV2-29A2NJV5 120 aaPredicted RBP12.23□□□□□ -0.45
CCDC28A-203ENST00000617445 GAGE12HA6NDE8 117 aa12.23□□□□□ -0.45
CCDC28A-203ENST00000617445 RPL37AP61513 92 aaKnown RBP12.23□□□□□ -0.45
CCDC28A-203ENST00000617445 MRAP2Q96G30 205 aa12.23□□□□□ -0.45
CCDC28A-203ENST00000617445 RNF185Q96GF1 192 aa12.23□□□□□ -0.45
CCDC28A-203ENST00000617445 TMEM101Q96IK0 257 aa12.23□□□□□ -0.45
CCDC28A-203ENST00000617445 BTF3L4Q96K17 158 aa12.23□□□□□ -0.45
CCDC28A-203ENST00000617445 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.23□□□□□ -0.45
CCDC28A-203ENST00000617445 CHCHD10Q8WYQ3 142 aaPredicted RBP12.22□□□□□ -0.45
CCDC28A-203ENST00000617445 IGKV3OR2-268A0A0C4DH90 116 aa12.21□□□□□ -0.45
CCDC28A-203ENST00000617445 C9JQL5 133 aa12.21□□□□□ -0.45
CCDC28A-203ENST00000617445 PPP1R17O96001 155 aa12.21□□□□□ -0.45
CCDC28A-203ENST00000617445 OXTP01178 125 aa12.21□□□□□ -0.45
CCDC28A-203ENST00000617445 SLPIP03973 132 aa12.21□□□□□ -0.45
CCDC28A-203ENST00000617445 ESDP10768 282 aa12.21□□□□□ -0.45
CCDC28A-203ENST00000617445 RAB4AP20338 218 aa12.21□□□□□ -0.45
CCDC28A-203ENST00000617445 RIGQ13278 110 aa12.21□□□□□ -0.45
CCDC28A-203ENST00000617445 OR5A1Q8NGJ0 315 aa12.21□□□□□ -0.45
CCDC28A-203ENST00000617445 NAT8Q9UHE5 227 aa12.21□□□□□ -0.45
CCDC28A-203ENST00000617445 TRBV27A0A0K0K1C4 114 aa12.2□□□□□ -0.46
CCDC28A-203ENST00000617445 POLR2KP53803 58 aaKnown RBP12.2□□□□□ -0.46
CCDC28A-203ENST00000617445 SRSF3P84103 164 aaKnown RBP12.2□□□□□ -0.46
CCDC28A-203ENST00000617445 C15orf56Q8N910 161 aa12.2□□□□□ -0.46
CCDC28A-203ENST00000617445 ISOC2Q96AB3 205 aa12.2□□□□□ -0.46
CCDC28A-203ENST00000617445 V9GYV3 84 aa12.2□□□□□ -0.46
CCDC28A-203ENST00000617445 TSHBP01222 138 aa12.19□□□□□ -0.46
CCDC28A-203ENST00000617445 RPS10P46783 165 aaKnown RBP12.19□□□□□ -0.46
CCDC28A-203ENST00000617445 RPL23P62829 140 aaKnown RBP12.19□□□□□ -0.46
CCDC28A-203ENST00000617445 DPH3Q96FX2 82 aa12.19□□□□□ -0.46
CCDC28A-203ENST00000617445 PANO1I0J062 215 aa12.18□□□□□ -0.46
CCDC28A-203ENST00000617445 RAB14P61106 215 aa12.18□□□□□ -0.46
CCDC28A-203ENST00000617445 MRPL52Q86TS9 123 aaKnown RBP12.18□□□□□ -0.46
CCDC28A-203ENST00000617445 NUP35Q8NFH5 326 aa12.18□□□□□ -0.46
CCDC28A-203ENST00000617445 NAT8BQ9UHF3 227 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms