RNA–Protein interactions for RNA: ENST00000616074.4

TRAPPC3-208, Transcript of trafficking protein particle complex 3, humanhuman

TSL 5 BASIC

Gene TRAPPC3, Length 1,114 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC3-208ENST00000616074 IFNA1P01562 189 aa13.23□□□□□ -0.29
TRAPPC3-208ENST00000616074 AP5S1Q9NUS5 200 aa13.23□□□□□ -0.29
TRAPPC3-208ENST00000616074 UBE2L6O14933 153 aa13.22□□□□□ -0.29
TRAPPC3-208ENST00000616074 PDE6DO43924 150 aa13.22□□□□□ -0.29
TRAPPC3-208ENST00000616074 CHTF8P0CG12 524 aa13.22□□□□□ -0.29
TRAPPC3-208ENST00000616074 MED9Q9NWA0 146 aa13.22□□□□□ -0.29
TRAPPC3-208ENST00000616074 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.21□□□□□ -0.29
TRAPPC3-208ENST00000616074 TEX46H3BTG2 121 aa13.21□□□□□ -0.29
TRAPPC3-208ENST00000616074 AMTP48728 403 aa13.21□□□□□ -0.29
TRAPPC3-208ENST00000616074 COTL1Q14019 142 aa13.21□□□□□ -0.29
TRAPPC3-208ENST00000616074 WDR73Q6P4I2 378 aa13.21□□□□□ -0.29
TRAPPC3-208ENST00000616074 A0A087WYN8 130 aa13.2□□□□□ -0.3
TRAPPC3-208ENST00000616074 MT1HL1P0DM35 61 aa13.2□□□□□ -0.3
TRAPPC3-208ENST00000616074 CTRLP40313 264 aa13.2□□□□□ -0.3
TRAPPC3-208ENST00000616074 SULT1A2P50226 295 aa13.2□□□□□ -0.3
TRAPPC3-208ENST00000616074 C9orf62Q8N4C0 152 aa13.2□□□□□ -0.3
TRAPPC3-208ENST00000616074 SPACA4Q8TDM5 124 aa13.2□□□□□ -0.3
TRAPPC3-208ENST00000616074 C15orf56Q8N910 161 aa13.19□□□□□ -0.3
TRAPPC3-208ENST00000616074 NUDT10Q8NFP7 164 aa13.19□□□□□ -0.3
TRAPPC3-208ENST00000616074 DPH3Q96FX2 82 aa13.19□□□□□ -0.3
TRAPPC3-208ENST00000616074 NUDT11Q96G61 164 aa13.19□□□□□ -0.3
TRAPPC3-208ENST00000616074 BIN3Q9NQY0 253 aa13.19□□□□□ -0.3
TRAPPC3-208ENST00000616074 BCL2P10415 239 aa13.18□□□□□ -0.3
TRAPPC3-208ENST00000616074 TWIST1Q15672 202 aa13.18□□□□□ -0.3
TRAPPC3-208ENST00000616074 EIF5AL1Q6IS14 154 aaKnown RBP13.18□□□□□ -0.3
TRAPPC3-208ENST00000616074 Q6ZRU5 148 aa13.18□□□□□ -0.3
TRAPPC3-208ENST00000616074 RNF185Q96GF1 192 aa13.18□□□□□ -0.3
TRAPPC3-208ENST00000616074 CNFNQ9BYD5 112 aa13.18□□□□□ -0.3
TRAPPC3-208ENST00000616074 TRAV26-2A0A0B4J265 109 aa13.17□□□□□ -0.3
TRAPPC3-208ENST00000616074 IGKV3OR2-268A0A0C4DH90 116 aa13.17□□□□□ -0.3
TRAPPC3-208ENST00000616074 GAGE12HA6NDE8 117 aa13.17□□□□□ -0.3
TRAPPC3-208ENST00000616074 GATD1Q8NB37 220 aa13.17□□□□□ -0.3
TRAPPC3-208ENST00000616074 TNXBP22105 4242 aa13.16□□□□□ -0.3
TRAPPC3-208ENST00000616074 Q6ZNX1 250 aa13.15□□□□□ -0.3
TRAPPC3-208ENST00000616074 RNASE7Q9H1E1 156 aaKnown RBP13.15□□□□□ -0.3
TRAPPC3-208ENST00000616074 RPP21Q9H633 154 aaKnown RBP13.15□□□□□ -0.3
TRAPPC3-208ENST00000616074 HIGD2BQ4VC39 106 aa13.14□□□□□ -0.31
TRAPPC3-208ENST00000616074 CFAP161Q6P656 301 aa13.14□□□□□ -0.31
TRAPPC3-208ENST00000616074 RPL39LQ96EH5 51 aaKnown RBP13.14□□□□□ -0.31
TRAPPC3-208ENST00000616074 PLAC8Q9NZF1 115 aa13.14□□□□□ -0.31
TRAPPC3-208ENST00000616074 K7EN84 100 aa13.13□□□□□ -0.31
TRAPPC3-208ENST00000616074 COX6A2Q02221 97 aa13.13□□□□□ -0.31
TRAPPC3-208ENST00000616074 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.12□□□□□ -0.31
TRAPPC3-208ENST00000616074 IGKV2-29A2NJV5 120 aaPredicted RBP13.12□□□□□ -0.31
TRAPPC3-208ENST00000616074 PHOX2AO14813 284 aa13.12□□□□□ -0.31
TRAPPC3-208ENST00000616074 AMMECR1LQ6DCA0 310 aa13.12□□□□□ -0.31
TRAPPC3-208ENST00000616074 CHCHD10Q8WYQ3 142 aaPredicted RBP13.12□□□□□ -0.31
TRAPPC3-208ENST00000616074 RPS10P46783 165 aaKnown RBP13.11□□□□□ -0.31
TRAPPC3-208ENST00000616074 FOXA3P55318 350 aaPredicted RBP13.11□□□□□ -0.31
TRAPPC3-208ENST00000616074 OCC1Q8TAD7 63 aa13.11□□□□□ -0.31
TRAPPC3-208ENST00000616074 GTSF1Q8WW33 167 aa13.11□□□□□ -0.31
TRAPPC3-208ENST00000616074 NDUFS6O75380 124 aaKnown RBP13.1□□□□□ -0.31
TRAPPC3-208ENST00000616074 NCR2O95944 276 aa13.1□□□□□ -0.31
TRAPPC3-208ENST00000616074 APCSP02743 223 aa13.1□□□□□ -0.31
TRAPPC3-208ENST00000616074 RNASEKQ6P5S7 137 aaKnown RBP13.1□□□□□ -0.31
TRAPPC3-208ENST00000616074 PRSS3P2Q8NHM4 247 aa13.1□□□□□ -0.31
TRAPPC3-208ENST00000616074 C7orf33Q8WU49 177 aa13.09□□□□□ -0.31
TRAPPC3-208ENST00000616074 GVQW2A0A096LPI5 108 aaPredicted RBP13.08□□□□□ -0.32
TRAPPC3-208ENST00000616074 IGKV2-24A0A0C4DH68 120 aa13.08□□□□□ -0.32
TRAPPC3-208ENST00000616074 H7C423 109 aa13.08□□□□□ -0.32
TRAPPC3-208ENST00000616074 FGF6P10767 208 aa13.08□□□□□ -0.32
TRAPPC3-208ENST00000616074 TAGLN2P37802 199 aaKnown RBP13.08□□□□□ -0.32
TRAPPC3-208ENST00000616074 MAJINQ3KP22 176 aa13.08□□□□□ -0.32
TRAPPC3-208ENST00000616074 SLC51BQ86UW2 128 aa13.08□□□□□ -0.32
TRAPPC3-208ENST00000616074 SDHAF1A6NFY7 115 aa13.07□□□□□ -0.32
TRAPPC3-208ENST00000616074 SMIM15Q7Z3B0 74 aa13.07□□□□□ -0.32
TRAPPC3-208ENST00000616074 FOXI1Q12951 378 aa13.06□□□□□ -0.32
TRAPPC3-208ENST00000616074 LRP2P98164 4655 aa13.06□□□□□ -0.32
TRAPPC3-208ENST00000616074 TEX261Q6UWH6 196 aa13.05□□□□□ -0.32
TRAPPC3-208ENST00000616074 TCTE3Q8IZS6 198 aa13.05□□□□□ -0.32
TRAPPC3-208ENST00000616074 STPG4Q8N801 248 aa13.05□□□□□ -0.32
TRAPPC3-208ENST00000616074 A0A096LNI7 61 aa13.04□□□□□ -0.32
TRAPPC3-208ENST00000616074 FAM231BA6NCW3 169 aa13.04□□□□□ -0.32
TRAPPC3-208ENST00000616074 GATCO43716 136 aaKnown RBP13.04□□□□□ -0.32
TRAPPC3-208ENST00000616074 OR5A1Q8NGJ0 315 aa13.04□□□□□ -0.32
TRAPPC3-208ENST00000616074 I3L3M4 83 aa13.03□□□□□ -0.32
TRAPPC3-208ENST00000616074 ZNF25P17030 456 aaPredicted RBP13.03□□□□□ -0.32
TRAPPC3-208ENST00000616074 XCL1P47992 114 aa13.03□□□□□ -0.32
TRAPPC3-208ENST00000616074 PRR3P79522 188 aaKnown RBP13.03□□□□□ -0.32
TRAPPC3-208ENST00000616074 LYPD6BQ8NI32 183 aa13.03□□□□□ -0.32
TRAPPC3-208ENST00000616074 GAS8-AS1O95177 125 aa13.02□□□□□ -0.33
TRAPPC3-208ENST00000616074 PMCHP20382 165 aa13.02□□□□□ -0.33
TRAPPC3-208ENST00000616074 FAM231DQ6ZW35 169 aa13.02□□□□□ -0.33
TRAPPC3-208ENST00000616074 TRBV6-5A0A0K0K1A5 114 aa13.01□□□□□ -0.33
TRAPPC3-208ENST00000616074 TMEM101Q96IK0 257 aa13.01□□□□□ -0.33
TRAPPC3-208ENST00000616074 BTF3L4Q96K17 158 aa13.01□□□□□ -0.33
TRAPPC3-208ENST00000616074 LINC00959A0A1B0GUT2 108 aa13□□□□□ -0.33
TRAPPC3-208ENST00000616074 A8MWL6 223 aa13□□□□□ -0.33
TRAPPC3-208ENST00000616074 TMEM250H0YL14 139 aa13□□□□□ -0.33
TRAPPC3-208ENST00000616074 CCL25O15444 150 aa13□□□□□ -0.33
TRAPPC3-208ENST00000616074 TSHBP01222 138 aa13□□□□□ -0.33
TRAPPC3-208ENST00000616074 ESDP10768 282 aa13□□□□□ -0.33
TRAPPC3-208ENST00000616074 LINC00526Q96FQ7 95 aa13□□□□□ -0.33
TRAPPC3-208ENST00000616074 TMEM242Q9NWH2 141 aa13□□□□□ -0.33
TRAPPC3-208ENST00000616074 IGHV1-58A0A0C4DH39 117 aa12.98□□□□□ -0.33
TRAPPC3-208ENST00000616074 CT83Q5H943 113 aa12.98□□□□□ -0.33
TRAPPC3-208ENST00000616074 LINC01600Q96MT4 127 aa12.98□□□□□ -0.33
TRAPPC3-208ENST00000616074 ST20Q9HBF5 79 aa12.98□□□□□ -0.33
TRAPPC3-208ENST00000616074 MRAP2Q96G30 205 aa12.97□□□□□ -0.33
TRAPPC3-208ENST00000616074 CARD19Q96LW7 228 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms