RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 TOMM6Q96B49 74 aa9.99□□□□□ -0.81
USP39-220ENST00000613444 VSIG2Q96IQ7 327 aa9.99□□□□□ -0.81
USP39-220ENST00000613444 PRADC1Q9BSG0 188 aa9.99□□□□□ -0.81
USP39-220ENST00000613444 KRTDAPP60985 99 aa9.99□□□□□ -0.81
USP39-220ENST00000613444 C2orf66Q6UXQ4 117 aa9.99□□□□□ -0.81
USP39-220ENST00000613444 SPATA12Q7Z6I5 190 aa9.99□□□□□ -0.81
USP39-220ENST00000613444 B9D2Q9BPU9 175 aa9.99□□□□□ -0.81
USP39-220ENST00000613444 DAZ4Q86SG3 579 aaKnown RBP9.98□□□□□ -0.81
USP39-220ENST00000613444 DAZ3Q9NR90 486 aaKnown RBP9.98□□□□□ -0.81
USP39-220ENST00000613444 SMIM6P0DI80 62 aa9.98□□□□□ -0.81
USP39-220ENST00000613444 CDPF1Q6NVV7 123 aa9.98□□□□□ -0.81
USP39-220ENST00000613444 CHCHD7Q9BUK0 85 aa9.98□□□□□ -0.81
USP39-220ENST00000613444 RPL39P62891 51 aaKnown RBP9.97□□□□□ -0.81
USP39-220ENST00000613444 NTM-AS1Q6ZSK4 140 aa9.97□□□□□ -0.81
USP39-220ENST00000613444 C20orf203Q8NBC4 194 aa9.97□□□□□ -0.81
USP39-220ENST00000613444 F5H768 121 aa9.97□□□□□ -0.81
USP39-220ENST00000613444 SYS1-DBNDD2H3BUS1 97 aa9.97□□□□□ -0.81
USP39-220ENST00000613444 GYPEP15421 78 aa9.97□□□□□ -0.81
USP39-220ENST00000613444 Q6ZTC4 211 aa9.97□□□□□ -0.81
USP39-220ENST00000613444 LINC00518Q8N0U6 118 aa9.97□□□□□ -0.81
USP39-220ENST00000613444 IFI27L1Q96BM0 104 aa9.97□□□□□ -0.81
USP39-220ENST00000613444 ZMAT4Q9H898 229 aa9.97□□□□□ -0.81
USP39-220ENST00000613444 PAX4O43316 350 aa9.96□□□□□ -0.82
USP39-220ENST00000613444 COTL1Q14019 142 aa9.96□□□□□ -0.82
USP39-220ENST00000613444 CYSLTR1Q9Y271 337 aa9.96□□□□□ -0.82
USP39-220ENST00000613444 STAB2Q8WWQ8 2551 aa9.96□□□□□ -0.82
USP39-220ENST00000613444 TRAV26-1A0A087WT03 109 aa9.95□□□□□ -0.82
USP39-220ENST00000613444 IGIPA6NJ69 53 aa9.95□□□□□ -0.82
USP39-220ENST00000613444 MAP1LC3CQ9BXW4 147 aa9.95□□□□□ -0.82
USP39-220ENST00000613444 A0A0J9YY99 117 aa9.95□□□□□ -0.82
USP39-220ENST00000613444 HTN3P15516 51 aa9.95□□□□□ -0.82
USP39-220ENST00000613444 G0S2P27469 103 aa9.95□□□□□ -0.82
USP39-220ENST00000613444 NANOS2P60321 138 aaKnown RBP9.95□□□□□ -0.82
USP39-220ENST00000613444 C11orf45Q8TAV5 145 aa9.95□□□□□ -0.82
USP39-220ENST00000613444 ATP5LO75964 103 aa9.94□□□□□ -0.82
USP39-220ENST00000613444 ERASQ7Z444 233 aa9.94□□□□□ -0.82
USP39-220ENST00000613444 SCGB3A1Q96QR1 104 aa9.94□□□□□ -0.82
USP39-220ENST00000613444 GTSF1LQ9H1H1 148 aa9.94□□□□□ -0.82
USP39-220ENST00000613444 SCGB1D1O95968 90 aa9.94□□□□□ -0.82
USP39-220ENST00000613444 LINC01549A6NIU2 74 aa9.93□□□□□ -0.82
USP39-220ENST00000613444 PET117Q6UWS5 81 aa9.93□□□□□ -0.82
USP39-220ENST00000613444 C12orf57Q99622 126 aa9.93□□□□□ -0.82
USP39-220ENST00000613444 DEFA6Q01524 100 aa9.92□□□□□ -0.82
USP39-220ENST00000613444 LINC01545Q5VT33 79 aa9.92□□□□□ -0.82
USP39-220ENST00000613444 FAM104AQ969W3 186 aa9.92□□□□□ -0.82
USP39-220ENST00000613444 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.92□□□□□ -0.82
USP39-220ENST00000613444 ATP6V0E2Q8NHE4 81 aa9.92□□□□□ -0.82
USP39-220ENST00000613444 TIMM17AQ99595 171 aa9.92□□□□□ -0.82
USP39-220ENST00000613444 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.91□□□□□ -0.82
USP39-220ENST00000613444 IGKV2-29A2NJV5 120 aaPredicted RBP9.91□□□□□ -0.82
USP39-220ENST00000613444 H0Y8G0 127 aa9.91□□□□□ -0.82
USP39-220ENST00000613444 BAALCQ8WXS3 180 aa9.9□□□□□ -0.82
USP39-220ENST00000613444 UBE2D4Q9Y2X8 147 aa9.9□□□□□ -0.82
USP39-220ENST00000613444 PYGO1Q9Y3Y4 419 aa9.9□□□□□ -0.82
USP39-220ENST00000613444 A0A096LPF7 62 aa9.9□□□□□ -0.83
USP39-220ENST00000613444 TRBV6-8A0A0A6YYG3 113 aa9.9□□□□□ -0.83
USP39-220ENST00000613444 H3BNG1 76 aa9.9□□□□□ -0.83
USP39-220ENST00000613444 ODF1Q14990 250 aa9.9□□□□□ -0.83
USP39-220ENST00000613444 LGALS9CQ6DKI2 356 aa9.9□□□□□ -0.83
USP39-220ENST00000613444 TEX43Q6ZNM6 134 aa9.9□□□□□ -0.83
USP39-220ENST00000613444 TMEM141Q96I45 108 aa9.9□□□□□ -0.83
USP39-220ENST00000613444 OPRPNQ99935 248 aaPredicted RBP9.9□□□□□ -0.83
USP39-220ENST00000613444 PMCHL2Q9BQD1 86 aa9.9□□□□□ -0.83
USP39-220ENST00000613444 PRSS1P07477 247 aa9.89□□□□□ -0.83
USP39-220ENST00000613444 CEMP1Q6PRD7 247 aaPredicted RBP9.89□□□□□ -0.83
USP39-220ENST00000613444 DEFB131BA0A096LNP1 70 aa9.88□□□□□ -0.83
USP39-220ENST00000613444 MRPL23Q16540 153 aaKnown RBP9.88□□□□□ -0.83
USP39-220ENST00000613444 Q6ZN92 141 aa9.88□□□□□ -0.83
USP39-220ENST00000613444 IGLV4-3A0A075B6K6 122 aa9.88□□□□□ -0.83
USP39-220ENST00000613444 TRBV25-1A0A075B6N4 114 aa9.88□□□□□ -0.83
USP39-220ENST00000613444 TRAV12-1A0A0B4J245 112 aa9.88□□□□□ -0.83
USP39-220ENST00000613444 NHLRC4P0CG21 123 aaPredicted RBP9.88□□□□□ -0.83
USP39-220ENST00000613444 ZC2HC1BQ5TFG8 222 aa9.88□□□□□ -0.83
USP39-220ENST00000613444 TMEM243Q9BU79 118 aa9.88□□□□□ -0.83
USP39-220ENST00000613444 ICOSQ9Y6W8 199 aa9.88□□□□□ -0.83
USP39-220ENST00000613444 TMEM97Q5BJF2 176 aa9.87□□□□□ -0.83
USP39-220ENST00000613444 TIMM21Q9BVV7 248 aa9.87□□□□□ -0.83
USP39-220ENST00000613444 SPANXA1Q9NS26 97 aa9.87□□□□□ -0.83
USP39-220ENST00000613444 A0A087WX48 190 aa9.87□□□□□ -0.83
USP39-220ENST00000613444 MRPL52Q86TS9 123 aaKnown RBP9.87□□□□□ -0.83
USP39-220ENST00000613444 ATOH7Q8N100 152 aa9.87□□□□□ -0.83
USP39-220ENST00000613444 DYNC2H1Q8NCM8 4307 aaKnown RBP9.86□□□□□ -0.83
USP39-220ENST00000613444 C20orf202A1L168 122 aa9.86□□□□□ -0.83
USP39-220ENST00000613444 PRSS29PA6NIE9 313 aa9.86□□□□□ -0.83
USP39-220ENST00000613444 NPSP0C0P6 89 aa9.86□□□□□ -0.83
USP39-220ENST00000613444 DNAH7Q8WXX0 4024 aa9.86□□□□□ -0.83
USP39-220ENST00000613444 FGF6P10767 208 aa9.85□□□□□ -0.83
USP39-220ENST00000613444 CST9LQ9H4G1 147 aa9.85□□□□□ -0.83
USP39-220ENST00000613444 CSDC2Q9Y534 153 aaKnown RBP9.85□□□□□ -0.83
USP39-220ENST00000613444 TRAV10A0A0B4J240 114 aa9.85□□□□□ -0.83
USP39-220ENST00000613444 H7C423 109 aa9.85□□□□□ -0.83
USP39-220ENST00000613444 SH2D6Q7Z4S9 175 aa9.85□□□□□ -0.83
USP39-220ENST00000613444 AMELXQ99217 191 aa9.85□□□□□ -0.83
USP39-220ENST00000613444 MRPL35Q9NZE8 188 aaKnown RBP9.85□□□□□ -0.83
USP39-220ENST00000613444 PMVKQ15126 192 aa9.84□□□□□ -0.83
USP39-220ENST00000613444 MRPS36P82909 103 aaKnown RBP9.84□□□□□ -0.83
USP39-220ENST00000613444 MAJINQ3KP22 176 aa9.84□□□□□ -0.83
USP39-220ENST00000613444 Q6ZUT4 128 aa9.84□□□□□ -0.83
USP39-220ENST00000613444 FBN3Q75N90 2809 aa9.83□□□□□ -0.84
USP39-220ENST00000613444 F8VRH5 84 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms