RNA–Protein interactions for RNA: ENST00000613073.4

CNOT3-208, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 2

Gene CNOT3, Length 2,778 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-208ENST00000613073 GNRH2O43555 120 aa12.24□□□□□ -0.45
CNOT3-208ENST00000613073 C15orf53Q8NAA6 179 aa12.24□□□□□ -0.45
CNOT3-208ENST00000613073 FAM19A4Q96LR4 140 aa12.24□□□□□ -0.45
CNOT3-208ENST00000613073 UNC79Q9P2D8 2635 aa12.23□□□□□ -0.45
CNOT3-208ENST00000613073 SLURP1P55000 103 aa12.23□□□□□ -0.45
CNOT3-208ENST00000613073 A4D1N5 150 aa12.23□□□□□ -0.45
CNOT3-208ENST00000613073 CRYGDP07320 174 aa12.23□□□□□ -0.45
CNOT3-208ENST00000613073 IGHV3-64A0A075B6Q5 118 aa12.22□□□□□ -0.45
CNOT3-208ENST00000613073 J3QKU1 62 aa12.22□□□□□ -0.45
CNOT3-208ENST00000613073 MEIG1Q5JSS6 88 aa12.21□□□□□ -0.45
CNOT3-208ENST00000613073 GCN1Q92616 2671 aaKnown RBP12.21□□□□□ -0.45
CNOT3-208ENST00000613073 TRAV2A0A0B4J234 112 aa12.21□□□□□ -0.46
CNOT3-208ENST00000613073 EIF4EBP3O60516 100 aaPredicted RBP12.2□□□□□ -0.46
CNOT3-208ENST00000613073 ASIPP42127 132 aa12.2□□□□□ -0.46
CNOT3-208ENST00000613073 WNK1Q9H4A3 2382 aa12.2□□□□□ -0.46
CNOT3-208ENST00000613073 IGLV4-69A0A075B6H9 119 aa12.2□□□□□ -0.46
CNOT3-208ENST00000613073 TRAV8-4A0A0B4J246 113 aa12.2□□□□□ -0.46
CNOT3-208ENST00000613073 HERVK_113P61574 105 aa12.2□□□□□ -0.46
CNOT3-208ENST00000613073 RPL39P62891 51 aaKnown RBP12.2□□□□□ -0.46
CNOT3-208ENST00000613073 ODF3Q96PU9 254 aa12.2□□□□□ -0.46
CNOT3-208ENST00000613073 PHLDA3Q9Y5J5 127 aa12.2□□□□□ -0.46
CNOT3-208ENST00000613073 TRAV12-3A0A0B4J271 114 aa12.19□□□□□ -0.46
CNOT3-208ENST00000613073 SNRPD3P62318 126 aaKnown RBP12.19□□□□□ -0.46
CNOT3-208ENST00000613073 TP53TG1Q9Y2A0 90 aa12.19□□□□□ -0.46
CNOT3-208ENST00000613073 TNFRSF18Q9Y5U5 241 aa12.19□□□□□ -0.46
CNOT3-208ENST00000613073 FASNP49327 2511 aaKnown RBP12.19□□□□□ -0.46
CNOT3-208ENST00000613073 TRAV12-2A0A075B6T6 113 aa12.19□□□□□ -0.46
CNOT3-208ENST00000613073 RNF152Q8N8N0 203 aa12.19□□□□□ -0.46
CNOT3-208ENST00000613073 HECTD1Q9ULT8 2610 aa12.19□□□□□ -0.46
CNOT3-208ENST00000613073 K7EQG2 157 aa12.18□□□□□ -0.46
CNOT3-208ENST00000613073 LGALS9O00182 355 aa12.18□□□□□ -0.46
CNOT3-208ENST00000613073 TSHBP01222 138 aa12.18□□□□□ -0.46
CNOT3-208ENST00000613073 Q8N2B8 174 aa12.18□□□□□ -0.46
CNOT3-208ENST00000613073 C11orf44Q8N8P7 122 aa12.18□□□□□ -0.46
CNOT3-208ENST00000613073 SLC25A29Q8N8R3 303 aa12.18□□□□□ -0.46
CNOT3-208ENST00000613073 APRG1Q8IVJ8 170 aa12.18□□□□□ -0.46
CNOT3-208ENST00000613073 IGHV4-4A0A075B6R2 117 aa12.18□□□□□ -0.46
CNOT3-208ENST00000613073 KLLNB2CW77 178 aa12.18□□□□□ -0.46
CNOT3-208ENST00000613073 CHCHD5Q9BSY4 110 aa12.18□□□□□ -0.46
CNOT3-208ENST00000613073 NIPBLQ6KC79 2804 aaeCLIP12.17□□□□□ -0.46
CNOT3-208ENST00000613073 IGHV3-33P01772 117 aa12.17□□□□□ -0.46
CNOT3-208ENST00000613073 RNASE3P12724 160 aaKnown RBP12.17□□□□□ -0.46
CNOT3-208ENST00000613073 MUC4Q99102 2169 aa12.17□□□□□ -0.46
CNOT3-208ENST00000613073 DNAJC9-AS1A6NH13 148 aa12.17□□□□□ -0.46
CNOT3-208ENST00000613073 NOTCH2Q04721 2471 aa12.16□□□□□ -0.46
CNOT3-208ENST00000613073 A0A0J9YX75 114 aa12.16□□□□□ -0.46
CNOT3-208ENST00000613073 Q6ZSV7 163 aa12.16□□□□□ -0.46
CNOT3-208ENST00000613073 LGALS3P17931 250 aaKnown RBP12.16□□□□□ -0.46
CNOT3-208ENST00000613073 LINC01620Q4KN68 170 aa12.16□□□□□ -0.46
CNOT3-208ENST00000613073 ZNRF2Q8NHG8 242 aa12.16□□□□□ -0.46
CNOT3-208ENST00000613073 ESM1Q9NQ30 184 aa12.16□□□□□ -0.46
CNOT3-208ENST00000613073 SPINK13Q1W4C9 94 aa12.15□□□□□ -0.46
CNOT3-208ENST00000613073 J3QQQ9 107 aa12.15□□□□□ -0.46
CNOT3-208ENST00000613073 DPH3P1Q9H4G8 78 aa12.15□□□□□ -0.46
CNOT3-208ENST00000613073 MUSTN1Q8IVN3 82 aa12.14□□□□□ -0.47
CNOT3-208ENST00000613073 PPDPFQ9H3Y8 114 aa12.14□□□□□ -0.47
CNOT3-208ENST00000613073 YAE1D1Q9NRH1 226 aa12.14□□□□□ -0.47
CNOT3-208ENST00000613073 ANK3Q12955 4377 aaKnown RBP12.14□□□□□ -0.47
CNOT3-208ENST00000613073 ZNF56Q15929 161 aa12.14□□□□□ -0.47
CNOT3-208ENST00000613073 OPRPNQ99935 248 aaPredicted RBP12.14□□□□□ -0.47
CNOT3-208ENST00000613073 TMEM263Q8WUH6 116 aaKnown RBP12.13□□□□□ -0.47
CNOT3-208ENST00000613073 A0A1W2PRX2 142 aa12.13□□□□□ -0.47
CNOT3-208ENST00000613073 H3BMM0 161 aa12.13□□□□□ -0.47
CNOT3-208ENST00000613073 PMVKQ15126 192 aa12.13□□□□□ -0.47
CNOT3-208ENST00000613073 UBE2WQ96B02 151 aa12.13□□□□□ -0.47
CNOT3-208ENST00000613073 ADARB2-AS1A8MUL3 147 aa12.13□□□□□ -0.47
CNOT3-208ENST00000613073 ATXN8Q156A1 80 aa12.13□□□□□ -0.47
CNOT3-208ENST00000613073 C4orf3Q8WVX3 66 aa12.13□□□□□ -0.47
CNOT3-208ENST00000613073 JPT2Q9H910 190 aa12.13□□□□□ -0.47
CNOT3-208ENST00000613073 KRTAP1-1Q07627 177 aa12.12□□□□□ -0.47
CNOT3-208ENST00000613073 AMELXQ99217 191 aa12.12□□□□□ -0.47
CNOT3-208ENST00000613073 KNCNA6PVL3 124 aa12.12□□□□□ -0.47
CNOT3-208ENST00000613073 C2orf82Q6UX34 121 aa12.11□□□□□ -0.47
CNOT3-208ENST00000613073 TMEM86BQ8N661 226 aa12.11□□□□□ -0.47
CNOT3-208ENST00000613073 DEFB131AP59861 70 aa12.1□□□□□ -0.47
CNOT3-208ENST00000613073 NPC2P61916 151 aa12.1□□□□□ -0.47
CNOT3-208ENST00000613073 TMEM61Q8N0U2 210 aa12.1□□□□□ -0.47
CNOT3-208ENST00000613073 MDFICQ9P1T7 246 aa12.1□□□□□ -0.47
CNOT3-208ENST00000613073 TRIAP1O43715 76 aa12.1□□□□□ -0.47
CNOT3-208ENST00000613073 IGIPA6NJ69 53 aa12.09□□□□□ -0.47
CNOT3-208ENST00000613073 MED14OSP0DP75 135 aa12.09□□□□□ -0.47
CNOT3-208ENST00000613073 Q6Q795 121 aa12.09□□□□□ -0.47
CNOT3-208ENST00000613073 A0A087WWL8 130 aa12.09□□□□□ -0.47
CNOT3-208ENST00000613073 F5H697 171 aa12.09□□□□□ -0.47
CNOT3-208ENST00000613073 PRSS2P07478 247 aa12.09□□□□□ -0.47
CNOT3-208ENST00000613073 PEMTQ9UBM1 199 aa12.09□□□□□ -0.47
CNOT3-208ENST00000613073 HTN1P15515 57 aa12.08□□□□□ -0.48
CNOT3-208ENST00000613073 ZNF256Q9Y2P7 627 aaPredicted RBP12.08□□□□□ -0.48
CNOT3-208ENST00000613073 TRBV10-2A0A0K0K1G8 114 aa12.08□□□□□ -0.48
CNOT3-208ENST00000613073 PAPPA-AS1Q5QFB9 102 aa12.08□□□□□ -0.48
CNOT3-208ENST00000613073 DYNLRB2Q8TF09 96 aa12.08□□□□□ -0.48
CNOT3-208ENST00000613073 CD28P10747 220 aa12.07□□□□□ -0.48
CNOT3-208ENST00000613073 CLEC2BQ92478 149 aa12.07□□□□□ -0.48
CNOT3-208ENST00000613073 P0DMU3 169 aa12.07□□□□□ -0.48
CNOT3-208ENST00000613073 FAM231AP0DMU4 169 aa12.07□□□□□ -0.48
CNOT3-208ENST00000613073 FAM231CP0DMU5 169 aa12.07□□□□□ -0.48
CNOT3-208ENST00000613073 SMR3AQ99954 134 aa12.07□□□□□ -0.48
CNOT3-208ENST00000613073 IGHV3-16A0A0C4DH30 117 aa12.06□□□□□ -0.48
CNOT3-208ENST00000613073 FAM74A4Q5TZK3 123 aa12.06□□□□□ -0.48
CNOT3-208ENST00000613073 IGHV1OR15-1A0A075B7D0 117 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms