RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 RPL32P62910 135 aaKnown RBP7.98□□□□□ -1.13
LINC00539-204ENST00000608957 Q6ZSN1 163 aa7.98□□□□□ -1.13
LINC00539-204ENST00000608957 LINC00336Q6ZUF6 198 aa7.98□□□□□ -1.13
LINC00539-204ENST00000608957 TMEM18Q96B42 140 aa7.98□□□□□ -1.13
LINC00539-204ENST00000608957 VSIG2Q96IQ7 327 aa7.98□□□□□ -1.13
LINC00539-204ENST00000608957 HIST1H2BLQ99880 126 aa7.98□□□□□ -1.13
LINC00539-204ENST00000608957 PKHD1P08F94 4074 aa7.97□□□□□ -1.13
LINC00539-204ENST00000608957 PKD1P98161 4303 aa7.97□□□□□ -1.13
LINC00539-204ENST00000608957 TRGV4A0A0C4DH28 118 aa7.97□□□□□ -1.13
LINC00539-204ENST00000608957 SDHAF1A6NFY7 115 aa7.97□□□□□ -1.13
LINC00539-204ENST00000608957 LINC01546A6NGU7 62 aa7.97□□□□□ -1.13
LINC00539-204ENST00000608957 FABP4P15090 132 aa7.97□□□□□ -1.13
LINC00539-204ENST00000608957 DNAJC30Q96LL9 226 aa7.97□□□□□ -1.13
LINC00539-204ENST00000608957 TMEM70Q9BUB7 260 aa7.97□□□□□ -1.13
LINC00539-204ENST00000608957 IGHV1-24A0A0C4DH33 117 aa7.96□□□□□ -1.14
LINC00539-204ENST00000608957 TRBV10-1A0A0K0K1A3 114 aa7.96□□□□□ -1.14
LINC00539-204ENST00000608957 PRSS29PA6NIE9 313 aa7.96□□□□□ -1.14
LINC00539-204ENST00000608957 POLR2KP53803 58 aaKnown RBP7.96□□□□□ -1.14
LINC00539-204ENST00000608957 FAM19A2Q8N3H0 131 aa7.96□□□□□ -1.14
LINC00539-204ENST00000608957 NEXN-AS1Q8NBZ9 246 aa7.96□□□□□ -1.14
LINC00539-204ENST00000608957 PACRGQ96M98 296 aaPredicted RBP7.96□□□□□ -1.14
LINC00539-204ENST00000608957 TRBV6-4A0A1B0GX49 114 aa7.95□□□□□ -1.14
LINC00539-204ENST00000608957 K7EMI3 77 aa7.95□□□□□ -1.14
LINC00539-204ENST00000608957 VCYO14598 125 aa7.95□□□□□ -1.14
LINC00539-204ENST00000608957 FHL2Q14192 279 aa7.95□□□□□ -1.14
LINC00539-204ENST00000608957 RHOHQ15669 191 aa7.95□□□□□ -1.14
LINC00539-204ENST00000608957 PMCHL1Q16048 86 aa7.95□□□□□ -1.14
LINC00539-204ENST00000608957 ESRGQ1W209 222 aa7.95□□□□□ -1.14
LINC00539-204ENST00000608957 NEGR1Q7Z3B1 354 aa7.95□□□□□ -1.14
LINC00539-204ENST00000608957 SLC25A29Q8N8R3 303 aa7.95□□□□□ -1.14
LINC00539-204ENST00000608957 KRTAP1-5Q9BYS1 174 aa7.95□□□□□ -1.14
LINC00539-204ENST00000608957 TNFRSF18Q9Y5U5 241 aa7.95□□□□□ -1.14
LINC00539-204ENST00000608957 A0A096LPF7 62 aa7.94□□□□□ -1.14
LINC00539-204ENST00000608957 TRBV27A0A0K0K1C4 114 aa7.94□□□□□ -1.14
LINC00539-204ENST00000608957 NBDYA0A0U1RRE5 68 aa7.94□□□□□ -1.14
LINC00539-204ENST00000608957 H3BNG1 76 aa7.94□□□□□ -1.14
LINC00539-204ENST00000608957 TCAPO15273 167 aa7.94□□□□□ -1.14
LINC00539-204ENST00000608957 HBDP02042 147 aa7.94□□□□□ -1.14
LINC00539-204ENST00000608957 AKR1D1P51857 326 aa7.94□□□□□ -1.14
LINC00539-204ENST00000608957 CCL18P55774 89 aa7.94□□□□□ -1.14
LINC00539-204ENST00000608957 LAGE3Q14657 143 aa7.94□□□□□ -1.14
LINC00539-204ENST00000608957 ORMDL2Q53FV1 153 aa7.94□□□□□ -1.14
LINC00539-204ENST00000608957 KIR2DL4Q99706 377 aa7.94□□□□□ -1.14
LINC00539-204ENST00000608957 DYNC1H1Q14204 4646 aaKnown RBP7.93□□□□□ -1.14
LINC00539-204ENST00000608957 A0A096LNJ9 63 aa7.93□□□□□ -1.14
LINC00539-204ENST00000608957 I3L3M4 83 aa7.93□□□□□ -1.14
LINC00539-204ENST00000608957 RPL36AP83881 106 aaKnown RBP7.93□□□□□ -1.14
LINC00539-204ENST00000608957 C1orf134Q5TEV5 83 aa7.93□□□□□ -1.14
LINC00539-204ENST00000608957 OR10D4PQ8NGN7 298 aa7.93□□□□□ -1.14
LINC00539-204ENST00000608957 RPL36ALQ969Q0 106 aaKnown RBP7.93□□□□□ -1.14
LINC00539-204ENST00000608957 PRADC1Q9BSG0 188 aa7.93□□□□□ -1.14
LINC00539-204ENST00000608957 Q9UF83 564 aa7.93□□□□□ -1.14
LINC00539-204ENST00000608957 TRBV7-3A0A075B6L6 115 aa7.92□□□□□ -1.14
LINC00539-204ENST00000608957 FCER1GP30273 86 aa7.92□□□□□ -1.14
LINC00539-204ENST00000608957 CRYBA4P53673 196 aa7.92□□□□□ -1.14
LINC00539-204ENST00000608957 UPK3BQ9BT76 320 aa7.92□□□□□ -1.14
LINC00539-204ENST00000608957 PRO0255Q9UI72 69 aa7.92□□□□□ -1.14
LINC00539-204ENST00000608957 HHLA3Q9XRX5 114 aa7.92□□□□□ -1.14
LINC00539-204ENST00000608957 MRPS16Q9Y3D3 137 aaKnown RBP7.92□□□□□ -1.14
LINC00539-204ENST00000608957 DNAH11Q96DT5 4516 aa7.91□□□□□ -1.14
LINC00539-204ENST00000608957 GAGE12JA6NER3 117 aa7.91□□□□□ -1.14
LINC00539-204ENST00000608957 LEPROTL1O95214 131 aa7.91□□□□□ -1.14
LINC00539-204ENST00000608957 TSHBP01222 138 aa7.91□□□□□ -1.14
LINC00539-204ENST00000608957 BTF3P20290 206 aaKnown RBP7.91□□□□□ -1.14
LINC00539-204ENST00000608957 TNP2Q05952 138 aa7.91□□□□□ -1.14
LINC00539-204ENST00000608957 GAGE1Q13065 139 aa7.91□□□□□ -1.14
LINC00539-204ENST00000608957 GAGE4Q13068 117 aa7.91□□□□□ -1.14
LINC00539-204ENST00000608957 GAGE5Q13069 117 aa7.91□□□□□ -1.14
LINC00539-204ENST00000608957 GAGE13Q4V321 117 aa7.91□□□□□ -1.14
LINC00539-204ENST00000608957 Q9H8V8 135 aa7.91□□□□□ -1.14
LINC00539-204ENST00000608957 HERC2O95714 4834 aa7.9□□□□□ -1.14
LINC00539-204ENST00000608957 LOC100131303A0A0U1RQF7 123 aa7.9□□□□□ -1.14
LINC00539-204ENST00000608957 PAX4O43316 350 aa7.9□□□□□ -1.14
LINC00539-204ENST00000608957 LINC00694P0DN24 101 aa7.9□□□□□ -1.14
LINC00539-204ENST00000608957 UBE2D3P61077 147 aa7.9□□□□□ -1.14
LINC00539-204ENST00000608957 UBE2D2P62837 147 aa7.9□□□□□ -1.14
LINC00539-204ENST00000608957 DAZ4Q86SG3 579 aaKnown RBP7.9□□□□□ -1.14
LINC00539-204ENST00000608957 C6orf223Q8N319 242 aa7.9□□□□□ -1.14
LINC00539-204ENST00000608957 DAZ3Q9NR90 486 aaKnown RBP7.9□□□□□ -1.14
LINC00539-204ENST00000608957 HSPB8Q9UJY1 196 aa7.9□□□□□ -1.14
LINC00539-204ENST00000608957 IGHV3-38A0A0C4DH36 116 aa7.89□□□□□ -1.15
LINC00539-204ENST00000608957 G0S2P27469 103 aa7.89□□□□□ -1.15
LINC00539-204ENST00000608957 DEFB104AQ8WTQ1 72 aa7.89□□□□□ -1.15
LINC00539-204ENST00000608957 GYPEP15421 78 aa7.88□□□□□ -1.15
LINC00539-204ENST00000608957 KRTDAPP60985 99 aa7.88□□□□□ -1.15
LINC00539-204ENST00000608957 COTL1Q14019 142 aa7.88□□□□□ -1.15
LINC00539-204ENST00000608957 LINC00173Q6ZV60 143 aa7.88□□□□□ -1.15
LINC00539-204ENST00000608957 TOMM6Q96B49 74 aa7.88□□□□□ -1.15
LINC00539-204ENST00000608957 CYSLTR1Q9Y271 337 aa7.88□□□□□ -1.15
LINC00539-204ENST00000608957 ICOSQ9Y6W8 199 aa7.88□□□□□ -1.15
LINC00539-204ENST00000608957 KIAA1109Q2LD37 5005 aa7.88□□□□□ -1.15
LINC00539-204ENST00000608957 C3orf79P0CE67 100 aa7.87□□□□□ -1.15
LINC00539-204ENST00000608957 C2orf66Q6UXQ4 117 aa7.87□□□□□ -1.15
LINC00539-204ENST00000608957 LINC01549A6NIU2 74 aa7.86□□□□□ -1.15
LINC00539-204ENST00000608957 ATP5LO75964 103 aa7.86□□□□□ -1.15
LINC00539-204ENST00000608957 SMIM6P0DI80 62 aa7.86□□□□□ -1.15
LINC00539-204ENST00000608957 LYPD5Q6UWN5 251 aa7.86□□□□□ -1.15
LINC00539-204ENST00000608957 C20orf203Q8NBC4 194 aa7.86□□□□□ -1.15
LINC00539-204ENST00000608957 IFI27L1Q96BM0 104 aa7.86□□□□□ -1.15
LINC00539-204ENST00000608957 MAP1LC3CQ9BXW4 147 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms