RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	CHTF8	P0CG12	524 aa		11.26	□□□□□ -0.61
SHKBP1-223	ENST00000600552	COTL1	Q14019	142 aa		11.26	□□□□□ -0.61
SHKBP1-223	ENST00000600552	EIF5AL1	Q6IS14	154 aa	Known RBP	11.26	□□□□□ -0.61
SHKBP1-223	ENST00000600552	IGHV3-64	A0A075B6Q5	118 aa		11.25	□□□□□ -0.61
SHKBP1-223	ENST00000600552	PDE6D	O43924	150 aa		11.25	□□□□□ -0.61
SHKBP1-223	ENST00000600552	WDR73	Q6P4I2	378 aa		11.25	□□□□□ -0.61
SHKBP1-223	ENST00000600552	NUDT10	Q8NFP7	164 aa		11.25	□□□□□ -0.61
SHKBP1-223	ENST00000600552	NUDT11	Q96G61	164 aa		11.25	□□□□□ -0.61
SHKBP1-223	ENST00000600552	BIN3	Q9NQY0	253 aa		11.25	□□□□□ -0.61
SHKBP1-223	ENST00000600552	PLA2G2D	Q9UNK4	145 aa		11.25	□□□□□ -0.61
SHKBP1-223	ENST00000600552	TRBV20OR9-2	A0A075B6H5	130 aa		11.24	□□□□□ -0.61
SHKBP1-223	ENST00000600552	TRAV16	A0A0A6YYK6	109 aa	Predicted RBP	11.24	□□□□□ -0.61
SHKBP1-223	ENST00000600552	TRAV26-2	A0A0B4J265	109 aa		11.24	□□□□□ -0.61
SHKBP1-223	ENST00000600552		A0A1B0GUV1	79 aa		11.24	□□□□□ -0.61
SHKBP1-223	ENST00000600552	GAGE12H	A6NDE8	117 aa		11.24	□□□□□ -0.61
SHKBP1-223	ENST00000600552	SLPI	P03973	132 aa		11.23	□□□□□ -0.61
SHKBP1-223	ENST00000600552	BCL2	P10415	239 aa		11.23	□□□□□ -0.61
SHKBP1-223	ENST00000600552	RNASE7	Q9H1E1	156 aa	Known RBP	11.23	□□□□□ -0.61
SHKBP1-223	ENST00000600552	CNBP	P62633	177 aa	Known RBP	11.22	□□□□□ -0.61
SHKBP1-223	ENST00000600552	AMMECR1L	Q6DCA0	310 aa		11.22	□□□□□ -0.61
SHKBP1-223	ENST00000600552	C9orf62	Q8N4C0	152 aa		11.22	□□□□□ -0.61
SHKBP1-223	ENST00000600552	GATD1	Q8NB37	220 aa		11.22	□□□□□ -0.61
SHKBP1-223	ENST00000600552	SMIM12	Q96EX1	92 aa		11.22	□□□□□ -0.61
SHKBP1-223	ENST00000600552	PGLYRP4	Q96LB8	373 aa		11.22	□□□□□ -0.61
SHKBP1-223	ENST00000600552	HIGD2B	Q4VC39	106 aa		11.21	□□□□□ -0.61
SHKBP1-223	ENST00000600552	RNASEK	Q6P5S7	137 aa	Known RBP	11.21	□□□□□ -0.61
SHKBP1-223	ENST00000600552	RPL39L	Q96EH5	51 aa	Known RBP	11.21	□□□□□ -0.61
SHKBP1-223	ENST00000600552	RPP21	Q9H633	154 aa	Known RBP	11.21	□□□□□ -0.61
SHKBP1-223	ENST00000600552		A0A087WYN8	130 aa		11.2	□□□□□ -0.62
SHKBP1-223	ENST00000600552	CTRL	P40313	264 aa		11.2	□□□□□ -0.62
SHKBP1-223	ENST00000600552	FOXA3	P55318	350 aa	Predicted RBP	11.2	□□□□□ -0.62
SHKBP1-223	ENST00000600552	OCC1	Q8TAD7	63 aa		11.2	□□□□□ -0.62
SHKBP1-223	ENST00000600552	HMCN2	Q8NDA2	5059 aa		11.2	□□□□□ -0.62
SHKBP1-223	ENST00000600552	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	11.19	□□□□□ -0.62
SHKBP1-223	ENST00000600552	IGKV2-29	A2NJV5	120 aa	Predicted RBP	11.19	□□□□□ -0.62
SHKBP1-223	ENST00000600552	CFAP161	Q6P656	301 aa		11.19	□□□□□ -0.62
SHKBP1-223	ENST00000600552	SMIM15	Q7Z3B0	74 aa		11.19	□□□□□ -0.62
SHKBP1-223	ENST00000600552	IGKV2-24	A0A0C4DH68	120 aa		11.18	□□□□□ -0.62
SHKBP1-223	ENST00000600552		K7EN84	100 aa		11.18	□□□□□ -0.62
SHKBP1-223	ENST00000600552	COX6A2	Q02221	97 aa		11.18	□□□□□ -0.62
SHKBP1-223	ENST00000600552		Q6ZNX1	250 aa		11.18	□□□□□ -0.62
SHKBP1-223	ENST00000600552	CEBPG	P53567	150 aa		11.17	□□□□□ -0.62
SHKBP1-223	ENST00000600552	C15orf56	Q8N910	161 aa		11.17	□□□□□ -0.62
SHKBP1-223	ENST00000600552	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	11.17	□□□□□ -0.62
SHKBP1-223	ENST00000600552	GATC	O43716	136 aa	Known RBP	11.16	□□□□□ -0.62
SHKBP1-223	ENST00000600552	APCS	P02743	223 aa		11.16	□□□□□ -0.62
SHKBP1-223	ENST00000600552	CIRBP	Q14011	172 aa	Known RBP	11.16	□□□□□ -0.62
SHKBP1-223	ENST00000600552	MAJIN	Q3KP22	176 aa		11.16	□□□□□ -0.62
SHKBP1-223	ENST00000600552	SLC51B	Q86UW2	128 aa		11.16	□□□□□ -0.62
SHKBP1-223	ENST00000600552	SPACA4	Q8TDM5	124 aa		11.16	□□□□□ -0.62
SHKBP1-223	ENST00000600552	GTSF1	Q8WW33	167 aa		11.16	□□□□□ -0.62
SHKBP1-223	ENST00000600552	PMCH	P20382	165 aa		11.15	□□□□□ -0.62
SHKBP1-223	ENST00000600552	RPS10	P46783	165 aa	Known RBP	11.15	□□□□□ -0.62
SHKBP1-223	ENST00000600552	LYPD6B	Q8NI32	183 aa		11.15	□□□□□ -0.62
SHKBP1-223	ENST00000600552	UBR4	Q5T4S7	5183 aa		11.15	□□□□□ -0.63
SHKBP1-223	ENST00000600552	PHOX2A	O14813	284 aa		11.14	□□□□□ -0.63
SHKBP1-223	ENST00000600552	FGF6	P10767	208 aa		11.14	□□□□□ -0.63
SHKBP1-223	ENST00000600552	PRSS3P2	Q8NHM4	247 aa		11.14	□□□□□ -0.63
SHKBP1-223	ENST00000600552	C7orf33	Q8WU49	177 aa		11.14	□□□□□ -0.63
SHKBP1-223	ENST00000600552	RNF185	Q96GF1	192 aa		11.14	□□□□□ -0.63
SHKBP1-223	ENST00000600552	SDHAF1	A6NFY7	115 aa		11.13	□□□□□ -0.63
SHKBP1-223	ENST00000600552	TAGLN2	P37802	199 aa	Known RBP	11.13	□□□□□ -0.63
SHKBP1-223	ENST00000600552		Q6ZRU5	148 aa		11.13	□□□□□ -0.63
SHKBP1-223	ENST00000600552	CNFN	Q9BYD5	112 aa		11.13	□□□□□ -0.63
SHKBP1-223	ENST00000600552	NCR2	O95944	276 aa		11.12	□□□□□ -0.63
SHKBP1-223	ENST00000600552	XCL1	P47992	114 aa		11.12	□□□□□ -0.63
SHKBP1-223	ENST00000600552	TCTE3	Q8IZS6	198 aa		11.12	□□□□□ -0.63
SHKBP1-223	ENST00000600552	LINC00526	Q96FQ7	95 aa		11.12	□□□□□ -0.63
SHKBP1-223	ENST00000600552	BTF3L4	Q96K17	158 aa		11.12	□□□□□ -0.63
SHKBP1-223	ENST00000600552	NDUFS6	O75380	124 aa	Known RBP	11.11	□□□□□ -0.63
SHKBP1-223	ENST00000600552	MT1HL1	P0DM35	61 aa		11.11	□□□□□ -0.63
SHKBP1-223	ENST00000600552	STPG4	Q8N801	248 aa		11.11	□□□□□ -0.63
SHKBP1-223	ENST00000600552	TMEM101	Q96IK0	257 aa		11.11	□□□□□ -0.63
SHKBP1-223	ENST00000600552	PLAC8	Q9NZF1	115 aa		11.11	□□□□□ -0.63
SHKBP1-223	ENST00000600552		A8MWL6	223 aa		11.1	□□□□□ -0.63
SHKBP1-223	ENST00000600552		I3L3M4	83 aa		11.1	□□□□□ -0.63
SHKBP1-223	ENST00000600552	TEX261	Q6UWH6	196 aa		11.1	□□□□□ -0.63
SHKBP1-223	ENST00000600552	BORCS7	Q96B45	105 aa		11.1	□□□□□ -0.63
SHKBP1-223	ENST00000600552	GAS8-AS1	O95177	125 aa		11.09	□□□□□ -0.63
SHKBP1-223	ENST00000600552	FOXI1	Q12951	378 aa		11.09	□□□□□ -0.63
SHKBP1-223	ENST00000600552	ALKAL2	Q6UX46	152 aa		11.09	□□□□□ -0.63
SHKBP1-223	ENST00000600552	ST20	Q9HBF5	79 aa		11.09	□□□□□ -0.63
SHKBP1-223	ENST00000600552	TMEM242	Q9NWH2	141 aa		11.09	□□□□□ -0.63
SHKBP1-223	ENST00000600552	GVQW2	A0A096LPI5	108 aa	Predicted RBP	11.08	□□□□□ -0.64
SHKBP1-223	ENST00000600552	FAM231B	A6NCW3	169 aa		11.08	□□□□□ -0.64
SHKBP1-223	ENST00000600552		H7C423	109 aa		11.08	□□□□□ -0.64
SHKBP1-223	ENST00000600552	CCL25	O15444	150 aa		11.08	□□□□□ -0.64
SHKBP1-223	ENST00000600552	OR5A1	Q8NGJ0	315 aa		11.08	□□□□□ -0.64
SHKBP1-223	ENST00000600552		A0A096LNI7	61 aa		11.07	□□□□□ -0.64
SHKBP1-223	ENST00000600552	BLOC1S1	P78537	153 aa		11.07	□□□□□ -0.64
SHKBP1-223	ENST00000600552	LINC00959	A0A1B0GUT2	108 aa		11.06	□□□□□ -0.64
SHKBP1-223	ENST00000600552	TSHB	P01222	138 aa		11.06	□□□□□ -0.64
SHKBP1-223	ENST00000600552	hCG_2014768	A0A024R1R8	64 aa		11.05	□□□□□ -0.64
SHKBP1-223	ENST00000600552	TMEM250	H0YL14	139 aa		11.05	□□□□□ -0.64
SHKBP1-223	ENST00000600552	ZNF25	P17030	456 aa	Predicted RBP	11.05	□□□□□ -0.64
SHKBP1-223	ENST00000600552	SS18	Q15532	418 aa		11.05	□□□□□ -0.64
SHKBP1-223	ENST00000600552	FAM231D	Q6ZW35	169 aa		11.05	□□□□□ -0.64
SHKBP1-223	ENST00000600552	MRAP2	Q96G30	205 aa		11.05	□□□□□ -0.64
SHKBP1-223	ENST00000600552	EIF5A2	Q9GZV4	153 aa	Known RBP	11.05	□□□□□ -0.64
SHKBP1-223	ENST00000600552	IGHV1-58	A0A0C4DH39	117 aa		11.04	□□□□□ -0.64

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