RNA–Protein interactions for RNA: ENST00000599454.5

PNKP-212, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 529 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-212ENST00000599454 AMTP48728 403 aa13.38□□□□□ -0.27
PNKP-212ENST00000599454 COTL1Q14019 142 aa13.38□□□□□ -0.27
PNKP-212ENST00000599454 C19orf71A6NCJ1 209 aa13.37□□□□□ -0.27
PNKP-212ENST00000599454 PHOX2AO14813 284 aa13.37□□□□□ -0.27
PNKP-212ENST00000599454 EIF5AP63241 154 aaKnown RBP13.37□□□□□ -0.27
PNKP-212ENST00000599454 KANTRA0A1W2PQU2 76 aa13.36□□□□□ -0.27
PNKP-212ENST00000599454 SMLR1H3BR10 107 aa13.36□□□□□ -0.27
PNKP-212ENST00000599454 C15orf56Q8N910 161 aa13.36□□□□□ -0.27
PNKP-212ENST00000599454 HMSDA8MTL9 139 aa13.35□□□□□ -0.27
PNKP-212ENST00000599454 BCL2L11O43521 198 aa13.35□□□□□ -0.27
PNKP-212ENST00000599454 RPS10P46783 165 aaKnown RBP13.35□□□□□ -0.27
PNKP-212ENST00000599454 GNG13Q9P2W3 67 aa13.35□□□□□ -0.27
PNKP-212ENST00000599454 GAGE12HA6NDE8 117 aa13.34□□□□□ -0.27
PNKP-212ENST00000599454 NDUFS6O75380 124 aaKnown RBP13.34□□□□□ -0.27
PNKP-212ENST00000599454 IFNA1P01562 189 aa13.34□□□□□ -0.27
PNKP-212ENST00000599454 CCL20P78556 96 aa13.34□□□□□ -0.27
PNKP-212ENST00000599454 COX6A2Q02221 97 aa13.34□□□□□ -0.27
PNKP-212ENST00000599454 BIN3Q9NQY0 253 aa13.34□□□□□ -0.27
PNKP-212ENST00000599454 TRAV1-1A0A0B4J248 108 aa13.33□□□□□ -0.28
PNKP-212ENST00000599454 NTF3P20783 257 aa13.33□□□□□ -0.28
PNKP-212ENST00000599454 GNG4P50150 75 aa13.33□□□□□ -0.28
PNKP-212ENST00000599454 RGS21Q2M5E4 152 aa13.33□□□□□ -0.28
PNKP-212ENST00000599454 LYZL1Q6UWQ5 148 aa13.33□□□□□ -0.28
PNKP-212ENST00000599454 TNXBP22105 4242 aa13.32□□□□□ -0.28
PNKP-212ENST00000599454 LINC01600Q96MT4 127 aa13.32□□□□□ -0.28
PNKP-212ENST00000599454 MAJINQ3KP22 176 aa13.31□□□□□ -0.28
PNKP-212ENST00000599454 C9orf62Q8N4C0 152 aa13.31□□□□□ -0.28
PNKP-212ENST00000599454 GVQW2A0A096LPI5 108 aaPredicted RBP13.3□□□□□ -0.28
PNKP-212ENST00000599454 TEX46H3BTG2 121 aa13.3□□□□□ -0.28
PNKP-212ENST00000599454 CTRLP40313 264 aa13.3□□□□□ -0.28
PNKP-212ENST00000599454 PRR3P79522 188 aaKnown RBP13.3□□□□□ -0.28
PNKP-212ENST00000599454 PRSS3P2Q8NHM4 247 aa13.3□□□□□ -0.28
PNKP-212ENST00000599454 GTSF1Q8WW33 167 aa13.3□□□□□ -0.28
PNKP-212ENST00000599454 IGKV2-24A0A0C4DH68 120 aa13.29□□□□□ -0.28
PNKP-212ENST00000599454 IGKV3OR2-268A0A0C4DH90 116 aa13.29□□□□□ -0.28
PNKP-212ENST00000599454 RAB19A4D1S5 217 aa13.29□□□□□ -0.28
PNKP-212ENST00000599454 H7C423 109 aa13.29□□□□□ -0.28
PNKP-212ENST00000599454 PDE6DO43924 150 aa13.29□□□□□ -0.28
PNKP-212ENST00000599454 NCR2O95944 276 aa13.29□□□□□ -0.28
PNKP-212ENST00000599454 HIGD2BQ4VC39 106 aa13.29□□□□□ -0.28
PNKP-212ENST00000599454 AMMECR1LQ6DCA0 310 aa13.29□□□□□ -0.28
PNKP-212ENST00000599454 CHCHD10Q8WYQ3 142 aaPredicted RBP13.29□□□□□ -0.28
PNKP-212ENST00000599454 CNFNQ9BYD5 112 aa13.29□□□□□ -0.28
PNKP-212ENST00000599454 PKIGQ9Y2B9 76 aa13.29□□□□□ -0.28
PNKP-212ENST00000599454 MEF2BQ02080 365 aaPredicted RBP13.28□□□□□ -0.28
PNKP-212ENST00000599454 STPG4Q8N801 248 aa13.28□□□□□ -0.28
PNKP-212ENST00000599454 TWIST1Q15672 202 aa13.27□□□□□ -0.29
PNKP-212ENST00000599454 GATD1Q8NB37 220 aa13.27□□□□□ -0.29
PNKP-212ENST00000599454 LINC00474Q9P2X8 69 aa13.27□□□□□ -0.29
PNKP-212ENST00000599454 LRP2P98164 4655 aa13.27□□□□□ -0.29
PNKP-212ENST00000599454 TRBV20OR9-2A0A075B6H5 130 aa13.25□□□□□ -0.29
PNKP-212ENST00000599454 EIF5AL1Q6IS14 154 aaKnown RBP13.25□□□□□ -0.29
PNKP-212ENST00000599454 RNASEKQ6P5S7 137 aaKnown RBP13.25□□□□□ -0.29
PNKP-212ENST00000599454 MED9Q9NWA0 146 aa13.25□□□□□ -0.29
PNKP-212ENST00000599454 A0A0J9YXV3 536 aa13.24□□□□□ -0.29
PNKP-212ENST00000599454 APCSP02743 223 aa13.24□□□□□ -0.29
PNKP-212ENST00000599454 TEX261Q6UWH6 196 aa13.24□□□□□ -0.29
PNKP-212ENST00000599454 Q6ZNX1 250 aa13.24□□□□□ -0.29
PNKP-212ENST00000599454 NUDT10Q8NFP7 164 aa13.24□□□□□ -0.29
PNKP-212ENST00000599454 NUDT11Q96G61 164 aa13.24□□□□□ -0.29
PNKP-212ENST00000599454 A0A096LNI7 61 aa13.23□□□□□ -0.29
PNKP-212ENST00000599454 TRAV26-2A0A0B4J265 109 aa13.23□□□□□ -0.29
PNKP-212ENST00000599454 ZNF25P17030 456 aaPredicted RBP13.23□□□□□ -0.29
PNKP-212ENST00000599454 REG3GQ6UW15 175 aa13.23□□□□□ -0.29
PNKP-212ENST00000599454 SPINK6Q6UWN8 80 aa13.23□□□□□ -0.29
PNKP-212ENST00000599454 LYPD6BQ8NI32 183 aa13.23□□□□□ -0.29
PNKP-212ENST00000599454 FGF6P10767 208 aa13.22□□□□□ -0.29
PNKP-212ENST00000599454 FOXI1Q12951 378 aa13.22□□□□□ -0.29
PNKP-212ENST00000599454 SMIM15Q7Z3B0 74 aa13.22□□□□□ -0.29
PNKP-212ENST00000599454 OR5A1Q8NGJ0 315 aa13.22□□□□□ -0.29
PNKP-212ENST00000599454 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.21□□□□□ -0.29
PNKP-212ENST00000599454 IGKV2-29A2NJV5 120 aaPredicted RBP13.21□□□□□ -0.29
PNKP-212ENST00000599454 RPL39LQ96EH5 51 aaKnown RBP13.21□□□□□ -0.29
PNKP-212ENST00000599454 RPP21Q9H633 154 aaKnown RBP13.21□□□□□ -0.29
PNKP-212ENST00000599454 IGHV1-58A0A0C4DH39 117 aa13.2□□□□□ -0.3
PNKP-212ENST00000599454 BCL2P10415 239 aa13.2□□□□□ -0.3
PNKP-212ENST00000599454 BTF3L4Q96K17 158 aa13.2□□□□□ -0.3
PNKP-212ENST00000599454 SDHAF1A6NFY7 115 aa13.19□□□□□ -0.3
PNKP-212ENST00000599454 TAGLN2P37802 199 aaKnown RBP13.19□□□□□ -0.3
PNKP-212ENST00000599454 KRTAP10-8P60410 259 aa13.18□□□□□ -0.3
PNKP-212ENST00000599454 TMEM101Q96IK0 257 aa13.18□□□□□ -0.3
PNKP-212ENST00000599454 CARD19Q96LW7 228 aa13.18□□□□□ -0.3
PNKP-212ENST00000599454 FAM210AQ96ND0 272 aa13.18□□□□□ -0.3
PNKP-212ENST00000599454 I3L3M4 83 aa13.17□□□□□ -0.3
PNKP-212ENST00000599454 XCL1P47992 114 aa13.17□□□□□ -0.3
PNKP-212ENST00000599454 Q6ZRP5 223 aa13.17□□□□□ -0.3
PNKP-212ENST00000599454 RNASE7Q9H1E1 156 aaKnown RBP13.17□□□□□ -0.3
PNKP-212ENST00000599454 LINC00959A0A1B0GUT2 108 aa13.16□□□□□ -0.3
PNKP-212ENST00000599454 TRBV6-5A0A0K0K1A5 114 aa13.15□□□□□ -0.3
PNKP-212ENST00000599454 CCL25O15444 150 aa13.15□□□□□ -0.3
PNKP-212ENST00000599454 PMCHP20382 165 aa13.15□□□□□ -0.3
PNKP-212ENST00000599454 SRSF9Q13242 221 aaKnown RBP eCLIP13.15□□□□□ -0.3
PNKP-212ENST00000599454 RNF213Q63HN8 5207 aa13.15□□□□□ -0.3
PNKP-212ENST00000599454 FAM231BA6NCW3 169 aa13.14□□□□□ -0.31
PNKP-212ENST00000599454 K7EN84 100 aa13.14□□□□□ -0.31
PNKP-212ENST00000599454 SS18Q15532 418 aa13.14□□□□□ -0.31
PNKP-212ENST00000599454 ZNF561-AS1K7EIQ3 104 aa13.13□□□□□ -0.31
PNKP-212ENST00000599454 ESDP10768 282 aa13.13□□□□□ -0.31
PNKP-212ENST00000599454 FOXA3P55318 350 aaPredicted RBP13.13□□□□□ -0.31
PNKP-212ENST00000599454 SYCNQ0VAF6 134 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms