RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 KCNIP4Q6PIL6 250 aa7.91□□□□□ -1.14
LIG1-217ENST00000599165 C1orf43Q9BWL3 253 aa7.91□□□□□ -1.14
LIG1-217ENST00000599165 HERC1Q15751 4861 aa7.91□□□□□ -1.14
LIG1-217ENST00000599165 ZNF727A8MUV8 499 aa7.9□□□□□ -1.14
LIG1-217ENST00000599165 A8MWL6 223 aa7.9□□□□□ -1.14
LIG1-217ENST00000599165 CRPP02741 224 aa7.9□□□□□ -1.14
LIG1-217ENST00000599165 PKIAP61925 76 aa7.9□□□□□ -1.14
LIG1-217ENST00000599165 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.9□□□□□ -1.14
LIG1-217ENST00000599165 TMEM243Q9BU79 118 aa7.9□□□□□ -1.14
LIG1-217ENST00000599165 OSTCQ9NRP0 149 aa7.9□□□□□ -1.14
LIG1-217ENST00000599165 V9GYV3 84 aa7.9□□□□□ -1.14
LIG1-217ENST00000599165 SRRM2Q9UQ35 2752 aaKnown RBP7.9□□□□□ -1.15
LIG1-217ENST00000599165 A0A1B0GUV1 79 aa7.89□□□□□ -1.15
LIG1-217ENST00000599165 USP17L23D6RBM5 183 aa7.89□□□□□ -1.15
LIG1-217ENST00000599165 TEX261Q6UWH6 196 aa7.89□□□□□ -1.15
LIG1-217ENST00000599165 TSKUQ8WUA8 353 aa7.89□□□□□ -1.15
LIG1-217ENST00000599165 FRZBQ92765 325 aa7.89□□□□□ -1.15
LIG1-217ENST00000599165 ISOC2Q96AB3 205 aa7.89□□□□□ -1.15
LIG1-217ENST00000599165 RNF185Q96GF1 192 aa7.89□□□□□ -1.15
LIG1-217ENST00000599165 HIGD1CA8MV81 97 aa7.88□□□□□ -1.15
LIG1-217ENST00000599165 HLA-DQA1P01909 254 aa7.88□□□□□ -1.15
LIG1-217ENST00000599165 PRSS1P07477 247 aa7.88□□□□□ -1.15
LIG1-217ENST00000599165 RPL23P62829 140 aaKnown RBP7.88□□□□□ -1.15
LIG1-217ENST00000599165 REG3AQ06141 175 aa7.88□□□□□ -1.15
LIG1-217ENST00000599165 IGLV10-54A0A075B6I4 117 aa7.87□□□□□ -1.15
LIG1-217ENST00000599165 TRBV6-5A0A0K0K1A5 114 aa7.87□□□□□ -1.15
LIG1-217ENST00000599165 FAM231BA6NCW3 169 aa7.87□□□□□ -1.15
LIG1-217ENST00000599165 RPS10P46783 165 aaKnown RBP7.87□□□□□ -1.15
LIG1-217ENST00000599165 AMTP48728 403 aa7.87□□□□□ -1.15
LIG1-217ENST00000599165 COTL1Q14019 142 aa7.87□□□□□ -1.15
LIG1-217ENST00000599165 SCXQ7RTU7 201 aa7.87□□□□□ -1.15
LIG1-217ENST00000599165 A0A1B0GUT8 65 aa7.86□□□□□ -1.15
LIG1-217ENST00000599165 SDHAF1A6NFY7 115 aa7.86□□□□□ -1.15
LIG1-217ENST00000599165 INAFM2P0DMQ5 153 aa7.86□□□□□ -1.15
LIG1-217ENST00000599165 NUP35Q8NFH5 326 aa7.86□□□□□ -1.15
LIG1-217ENST00000599165 TMEM191AQ9H0A3 160 aa7.86□□□□□ -1.15
LIG1-217ENST00000599165 DMBT1Q9UGM3 2413 aaPredicted RBP7.86□□□□□ -1.15
LIG1-217ENST00000599165 RAB4AP20338 218 aa7.85□□□□□ -1.15
LIG1-217ENST00000599165 KRTAP10-4P60372 401 aaPredicted RBP7.85□□□□□ -1.15
LIG1-217ENST00000599165 TMEM241Q24JQ0 296 aa7.85□□□□□ -1.15
LIG1-217ENST00000599165 AMN1Q8IY45 258 aa7.85□□□□□ -1.15
LIG1-217ENST00000599165 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.84□□□□□ -1.15
LIG1-217ENST00000599165 IGKV2-29A2NJV5 120 aaPredicted RBP7.84□□□□□ -1.15
LIG1-217ENST00000599165 NCR2O95944 276 aa7.84□□□□□ -1.15
LIG1-217ENST00000599165 TSHBP01222 138 aa7.84□□□□□ -1.15
LIG1-217ENST00000599165 SLPIP03973 132 aa7.84□□□□□ -1.15
LIG1-217ENST00000599165 ESDP10768 282 aa7.84□□□□□ -1.15
LIG1-217ENST00000599165 POLR2KP53803 58 aaKnown RBP7.84□□□□□ -1.15
LIG1-217ENST00000599165 FAM74A3Q4VXF1 159 aa7.84□□□□□ -1.15
LIG1-217ENST00000599165 C14orf177Q52M58 125 aa7.84□□□□□ -1.15
LIG1-217ENST00000599165 CIRBP-AS1Q8TBR5 109 aa7.84□□□□□ -1.15
LIG1-217ENST00000599165 CHAC1Q9BUX1 264 aa7.84□□□□□ -1.15
LIG1-217ENST00000599165 TRAV8-4A0A0B4J246 113 aa7.83□□□□□ -1.16
LIG1-217ENST00000599165 SMKR1H3BMG3 65 aa7.83□□□□□ -1.16
LIG1-217ENST00000599165 PANO1I0J062 215 aa7.83□□□□□ -1.16
LIG1-217ENST00000599165 SMIM15Q7Z3B0 74 aa7.83□□□□□ -1.16
LIG1-217ENST00000599165 LINC00528Q8N1L1 170 aa7.83□□□□□ -1.16
LIG1-217ENST00000599165 NAT8Q9UHE5 227 aa7.83□□□□□ -1.16
LIG1-217ENST00000599165 LRP1Q07954 4544 aaKnown RBP7.82□□□□□ -1.16
LIG1-217ENST00000599165 SMIM27A0A1W2PRY6 76 aa7.82□□□□□ -1.16
LIG1-217ENST00000599165 FAM229AH3BQW9 127 aa7.82□□□□□ -1.16
LIG1-217ENST00000599165 I3L3M4 83 aa7.82□□□□□ -1.16
LIG1-217ENST00000599165 UBE2L6O14933 153 aa7.82□□□□□ -1.16
LIG1-217ENST00000599165 ADIRFQ15847 76 aa7.82□□□□□ -1.16
LIG1-217ENST00000599165 NRACQ8N912 160 aa7.82□□□□□ -1.16
LIG1-217ENST00000599165 C9orf163Q8N9P6 203 aa7.82□□□□□ -1.16
LIG1-217ENST00000599165 TMEM242Q9NWH2 141 aa7.82□□□□□ -1.16
LIG1-217ENST00000599165 TRBV27A0A0K0K1C4 114 aa7.81□□□□□ -1.16
LIG1-217ENST00000599165 APCSP02743 223 aa7.81□□□□□ -1.16
LIG1-217ENST00000599165 FGF6P10767 208 aa7.81□□□□□ -1.16
LIG1-217ENST00000599165 PEA15Q15121 130 aa7.81□□□□□ -1.16
LIG1-217ENST00000599165 DGAT2L7PQ6IED9 249 aa7.81□□□□□ -1.16
LIG1-217ENST00000599165 C15orf56Q8N910 161 aa7.81□□□□□ -1.16
LIG1-217ENST00000599165 BORCS7Q96B45 105 aa7.81□□□□□ -1.16
LIG1-217ENST00000599165 MRAP2Q96G30 205 aa7.81□□□□□ -1.16
LIG1-217ENST00000599165 NAT8BQ9UHF3 227 aa7.81□□□□□ -1.16
LIG1-217ENST00000599165 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.81□□□□□ -1.16
LIG1-217ENST00000599165 PKHD1L1Q86WI1 4243 aa7.8□□□□□ -1.16
LIG1-217ENST00000599165 H7C423 109 aa7.8□□□□□ -1.16
LIG1-217ENST00000599165 CNBPP62633 177 aaKnown RBP7.8□□□□□ -1.16
LIG1-217ENST00000599165 SDIM1Q6ZPB5 146 aa7.8□□□□□ -1.16
LIG1-217ENST00000599165 SMDT1Q9H4I9 107 aa7.8□□□□□ -1.16
LIG1-217ENST00000599165 ST20Q9HBF5 79 aa7.8□□□□□ -1.16
LIG1-217ENST00000599165 FAT3Q8TDW7 4589 aa7.79□□□□□ -1.16
LIG1-217ENST00000599165 IGKV3OR2-268A0A0C4DH90 116 aa7.79□□□□□ -1.16
LIG1-217ENST00000599165 GAGE12HA6NDE8 117 aa7.79□□□□□ -1.16
LIG1-217ENST00000599165 PMCHP20382 165 aa7.79□□□□□ -1.16
LIG1-217ENST00000599165 RIGQ13278 110 aa7.79□□□□□ -1.16
LIG1-217ENST00000599165 MRPL51Q4U2R6 128 aaKnown RBP7.79□□□□□ -1.16
LIG1-217ENST00000599165 CLRN3Q8NCR9 226 aa7.79□□□□□ -1.16
LIG1-217ENST00000599165 A0A1B0GXF2 115 aa7.78□□□□□ -1.16
LIG1-217ENST00000599165 FOXI1Q12951 378 aa7.78□□□□□ -1.16
LIG1-217ENST00000599165 FAM104BQ5XKR9 115 aa7.78□□□□□ -1.16
LIG1-217ENST00000599165 AMMECR1LQ6DCA0 310 aa7.78□□□□□ -1.16
LIG1-217ENST00000599165 RNASEKQ6P5S7 137 aaKnown RBP7.78□□□□□ -1.16
LIG1-217ENST00000599165 MRPL52Q86TS9 123 aaKnown RBP7.78□□□□□ -1.16
LIG1-217ENST00000599165 CHCHD10Q8WYQ3 142 aaPredicted RBP7.78□□□□□ -1.16
LIG1-217ENST00000599165 hDV102S1A0JD36 115 aa7.77□□□□□ -1.17
LIG1-217ENST00000599165 ZNF25P17030 456 aaPredicted RBP7.77□□□□□ -1.17
LIG1-217ENST00000599165 CIRBPQ14011 172 aaKnown RBP7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms