RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 WDR73Q6P4I2 378 aa7.04□□□□□ -1.28
VRK3-214ENST00000598553 NIT1Q86X76 327 aa7.04□□□□□ -1.28
VRK3-214ENST00000598553 BAGE2Q86Y30 109 aa7.04□□□□□ -1.28
VRK3-214ENST00000598553 NEXN-AS1Q8NBZ9 246 aa7.04□□□□□ -1.28
VRK3-214ENST00000598553 TMEM18Q96B42 140 aa7.04□□□□□ -1.28
VRK3-214ENST00000598553 SMIM12Q96EX1 92 aa7.04□□□□□ -1.28
VRK3-214ENST00000598553 PACRGQ96M98 296 aaPredicted RBP7.04□□□□□ -1.28
VRK3-214ENST00000598553 HIST1H2BLQ99880 126 aa7.04□□□□□ -1.28
VRK3-214ENST00000598553 TRAV8-3A0A0A6YYJ7 113 aa7.03□□□□□ -1.28
VRK3-214ENST00000598553 TRBV10-1A0A0K0K1A3 114 aa7.03□□□□□ -1.28
VRK3-214ENST00000598553 EPM2AB3EWF7 344 aa7.03□□□□□ -1.28
VRK3-214ENST00000598553 CTAG1AP78358 180 aa7.03□□□□□ -1.28
VRK3-214ENST00000598553 PYY3Q5JQD4 70 aa7.03□□□□□ -1.28
VRK3-214ENST00000598553 BAALCQ8WXS3 180 aa7.03□□□□□ -1.28
VRK3-214ENST00000598553 SSBP4Q9BWG4 385 aaPredicted RBP7.03□□□□□ -1.28
VRK3-214ENST00000598553 TM2D2Q9BX73 214 aa7.03□□□□□ -1.28
VRK3-214ENST00000598553 KIF25-AS1Q9Y6Z4 181 aa7.03□□□□□ -1.28
VRK3-214ENST00000598553 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.02□□□□□ -1.29
VRK3-214ENST00000598553 K7EN84 100 aa7.02□□□□□ -1.29
VRK3-214ENST00000598553 FAM231DQ6ZW35 169 aa7.02□□□□□ -1.29
VRK3-214ENST00000598553 GNB1LQ9BYB4 327 aa7.02□□□□□ -1.29
VRK3-214ENST00000598553 KLK12Q9UKR0 248 aa7.02□□□□□ -1.29
VRK3-214ENST00000598553 V9GYV3 84 aa7.02□□□□□ -1.29
VRK3-214ENST00000598553 TRBV7-3A0A075B6L6 115 aa7.01□□□□□ -1.29
VRK3-214ENST00000598553 OR5AL1P0C617 328 aa7.01□□□□□ -1.29
VRK3-214ENST00000598553 RPL36AP83881 106 aaKnown RBP7.01□□□□□ -1.29
VRK3-214ENST00000598553 JOSD1Q15040 202 aaPredicted RBP7.01□□□□□ -1.29
VRK3-214ENST00000598553 ZNF56Q15929 161 aa7.01□□□□□ -1.29
VRK3-214ENST00000598553 PDZD11Q5EBL8 140 aa7.01□□□□□ -1.29
VRK3-214ENST00000598553 RASL11AQ6T310 242 aa7.01□□□□□ -1.29
VRK3-214ENST00000598553 NTM-AS1Q6ZSK4 140 aa7.01□□□□□ -1.29
VRK3-214ENST00000598553 RPL36ALQ969Q0 106 aaKnown RBP7.01□□□□□ -1.29
VRK3-214ENST00000598553 TMEM70Q9BUB7 260 aa7.01□□□□□ -1.29
VRK3-214ENST00000598553 TSTD3H0UI37 97 aa7□□□□□ -1.29
VRK3-214ENST00000598553 IGLC6P0CF74 106 aa7□□□□□ -1.29
VRK3-214ENST00000598553 RAB4BP61018 213 aa7□□□□□ -1.29
VRK3-214ENST00000598553 PKIAP61925 76 aa7□□□□□ -1.29
VRK3-214ENST00000598553 MPV17L2Q567V2 206 aa7□□□□□ -1.29
VRK3-214ENST00000598553 DEFB104AQ8WTQ1 72 aa7□□□□□ -1.29
VRK3-214ENST00000598553 CHCHD7Q9BUK0 85 aa7□□□□□ -1.29
VRK3-214ENST00000598553 MRPL18Q9H0U6 180 aaKnown RBP7□□□□□ -1.29
VRK3-214ENST00000598553 SMIM27A0A1W2PRY6 76 aa6.99□□□□□ -1.29
VRK3-214ENST00000598553 C19orf71A6NCJ1 209 aa6.99□□□□□ -1.29
VRK3-214ENST00000598553 GATCO43716 136 aaKnown RBP6.99□□□□□ -1.29
VRK3-214ENST00000598553 Q0VG73 95 aa6.99□□□□□ -1.29
VRK3-214ENST00000598553 SPANXN1Q5VSR9 72 aa6.99□□□□□ -1.29
VRK3-214ENST00000598553 ENHOQ6UWT2 76 aa6.99□□□□□ -1.29
VRK3-214ENST00000598553 Q8N976 141 aa6.99□□□□□ -1.29
VRK3-214ENST00000598553 UBE2WQ96B02 151 aa6.99□□□□□ -1.29
VRK3-214ENST00000598553 RMI2Q96E14 147 aa6.99□□□□□ -1.29
VRK3-214ENST00000598553 COX11Q9Y6N1 276 aa6.99□□□□□ -1.29
VRK3-214ENST00000598553 FLG2Q5D862 2391 aaPredicted RBP6.99□□□□□ -1.29
VRK3-214ENST00000598553 IGKV2D-24A0A075B6R9 120 aa6.98□□□□□ -1.29
VRK3-214ENST00000598553 A0A087WX48 190 aa6.98□□□□□ -1.29
VRK3-214ENST00000598553 LINC00587B1AMM8 73 aa6.98□□□□□ -1.29
VRK3-214ENST00000598553 HLA-DQA1P01909 254 aa6.98□□□□□ -1.29
VRK3-214ENST00000598553 INAFM2P0DMQ5 153 aa6.98□□□□□ -1.29
VRK3-214ENST00000598553 ESDP10768 282 aa6.98□□□□□ -1.29
VRK3-214ENST00000598553 IQCJQ1A5X6 159 aa6.98□□□□□ -1.29
VRK3-214ENST00000598553 CLPSL2Q6UWE3 100 aa6.98□□□□□ -1.29
VRK3-214ENST00000598553 Q6ZSA8 131 aa6.98□□□□□ -1.29
VRK3-214ENST00000598553 AP1S3Q96PC3 154 aa6.98□□□□□ -1.29
VRK3-214ENST00000598553 TRBV6-8A0A0A6YYG3 113 aa6.97□□□□□ -1.29
VRK3-214ENST00000598553 CT83Q5H943 113 aa6.97□□□□□ -1.29
VRK3-214ENST00000598553 ATP5L2Q7Z4Y8 100 aa6.97□□□□□ -1.29
VRK3-214ENST00000598553 OR2D3Q8NGH3 330 aa6.97□□□□□ -1.29
VRK3-214ENST00000598553 TPPP3Q9BW30 176 aa6.97□□□□□ -1.29
VRK3-214ENST00000598553 RNASE7Q9H1E1 156 aaKnown RBP6.97□□□□□ -1.29
VRK3-214ENST00000598553 NAT8BQ9UHF3 227 aa6.97□□□□□ -1.29
VRK3-214ENST00000598553 F5H697 171 aa6.96□□□□□ -1.3
VRK3-214ENST00000598553 MGPP08493 103 aa6.96□□□□□ -1.3
VRK3-214ENST00000598553 SMIM17P0DL12 118 aa6.96□□□□□ -1.3
VRK3-214ENST00000598553 SUMO4Q6EEV6 95 aa6.96□□□□□ -1.3
VRK3-214ENST00000598553 KRTAP26-1Q6PEX3 210 aa6.96□□□□□ -1.3
VRK3-214ENST00000598553 FER1L6-AS1Q8NA97 138 aa6.96□□□□□ -1.3
VRK3-214ENST00000598553 TSKUQ8WUA8 353 aa6.96□□□□□ -1.3
VRK3-214ENST00000598553 GFRA4Q9GZZ7 299 aa6.96□□□□□ -1.3
VRK3-214ENST00000598553 MYCBP2O75592 4640 aa6.96□□□□□ -1.3
VRK3-214ENST00000598553 SRRM2Q9UQ35 2752 aaKnown RBP6.96□□□□□ -1.3
VRK3-214ENST00000598553 FAM231BA6NCW3 169 aa6.95□□□□□ -1.3
VRK3-214ENST00000598553 M0QY20 66 aa6.95□□□□□ -1.3
VRK3-214ENST00000598553 RPS20P60866 119 aaKnown RBP6.95□□□□□ -1.3
VRK3-214ENST00000598553 GAGE6Q13070 117 aa6.95□□□□□ -1.3
VRK3-214ENST00000598553 TMEM136Q6ZRR5 245 aa6.95□□□□□ -1.3
VRK3-214ENST00000598553 BAGE3Q86Y29 109 aa6.95□□□□□ -1.3
VRK3-214ENST00000598553 DAZAP1Q96EP5 407 aaKnown RBP6.95□□□□□ -1.3
VRK3-214ENST00000598553 A8MWL6 223 aa6.94□□□□□ -1.3
VRK3-214ENST00000598553 TMEM262E9PQX1 116 aa6.94□□□□□ -1.3
VRK3-214ENST00000598553 FAM229AH3BQW9 127 aa6.94□□□□□ -1.3
VRK3-214ENST00000598553 P01737 135 aa6.94□□□□□ -1.3
VRK3-214ENST00000598553 APCSP02743 223 aa6.94□□□□□ -1.3
VRK3-214ENST00000598553 TMEM97Q5BJF2 176 aa6.94□□□□□ -1.3
VRK3-214ENST00000598553 LYZL1Q6UWQ5 148 aa6.94□□□□□ -1.3
VRK3-214ENST00000598553 SCXQ7RTU7 201 aa6.94□□□□□ -1.3
VRK3-214ENST00000598553 NUDT10Q8NFP7 164 aa6.94□□□□□ -1.3
VRK3-214ENST00000598553 NUDT11Q96G61 164 aa6.94□□□□□ -1.3
VRK3-214ENST00000598553 CHCHD5Q9BSY4 110 aa6.94□□□□□ -1.3
VRK3-214ENST00000598553 RPP21Q9H633 154 aaKnown RBP6.94□□□□□ -1.3
VRK3-214ENST00000598553 HERC1Q15751 4861 aa6.94□□□□□ -1.3
VRK3-214ENST00000598553 CRPP02741 224 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms