RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 HIST1H2BJP06899 126 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 INAFM2P0DMQ5 153 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 HIST1H2BOP23527 126 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 HIST1H2BBP33778 126 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 HIST1H2BDP58876 126 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 UBE2D3P61077 147 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 SUMO2P61956 95 aaKnown RBP6.53□□□□□ -1.36
TRIM28-208ENST00000597172 HIST1H2BCP62807 126 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 UBE2D2P62837 147 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 RPL36AP83881 106 aaKnown RBP6.53□□□□□ -1.36
TRIM28-208ENST00000597172 HIST2H2BEQ16778 126 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 IQCJQ1A5X6 159 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.53□□□□□ -1.36
TRIM28-208ENST00000597172 HIST1H2BHQ93079 126 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 RPL36ALQ969Q0 106 aaKnown RBP6.53□□□□□ -1.36
TRIM28-208ENST00000597172 HIST1H2BNQ99877 126 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 HIST1H2BMQ99879 126 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 C20orf78Q9BR46 151 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 TMEM70Q9BUB7 260 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 ST20Q9HBF5 79 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 TNFRSF18Q9Y5U5 241 aa6.53□□□□□ -1.36
TRIM28-208ENST00000597172 IGHV3-38A0A0C4DH36 116 aa6.52□□□□□ -1.37
TRIM28-208ENST00000597172 C1orf196B1AJZ1 125 aa6.52□□□□□ -1.37
TRIM28-208ENST00000597172 IFI27P40305 119 aaPredicted RBP6.52□□□□□ -1.37
TRIM28-208ENST00000597172 RPL32P62910 135 aaKnown RBP6.52□□□□□ -1.37
TRIM28-208ENST00000597172 Q0VG73 95 aa6.52□□□□□ -1.37
TRIM28-208ENST00000597172 NEGR1Q7Z3B1 354 aa6.52□□□□□ -1.37
TRIM28-208ENST00000597172 DEFB104AQ8WTQ1 72 aa6.52□□□□□ -1.37
TRIM28-208ENST00000597172 URB1-AS1Q96HZ7 61 aa6.52□□□□□ -1.37
TRIM28-208ENST00000597172 TRBV27A0A0K0K1C4 114 aa6.51□□□□□ -1.37
TRIM28-208ENST00000597172 IGLL5B9A064 214 aa6.51□□□□□ -1.37
TRIM28-208ENST00000597172 VCYO14598 125 aa6.51□□□□□ -1.37
TRIM28-208ENST00000597172 MRPL23Q16540 153 aaKnown RBP6.51□□□□□ -1.37
TRIM28-208ENST00000597172 NIT1Q86X76 327 aa6.51□□□□□ -1.37
TRIM28-208ENST00000597172 Q8N8P6 123 aa6.51□□□□□ -1.37
TRIM28-208ENST00000597172 SMIM2Q9BVW6 85 aa6.51□□□□□ -1.37
TRIM28-208ENST00000597172 MAP1LC3AQ9H492 121 aa6.51□□□□□ -1.37
TRIM28-208ENST00000597172 LINC01546A6NGU7 62 aa6.5□□□□□ -1.37
TRIM28-208ENST00000597172 C16orf90A8MZG2 172 aa6.5□□□□□ -1.37
TRIM28-208ENST00000597172 I3L3M4 83 aa6.5□□□□□ -1.37
TRIM28-208ENST00000597172 NUPR1O60356 82 aa6.5□□□□□ -1.37
TRIM28-208ENST00000597172 NUDT3O95989 172 aa6.5□□□□□ -1.37
TRIM28-208ENST00000597172 TSHBP01222 138 aa6.5□□□□□ -1.37
TRIM28-208ENST00000597172 LINC00310P59036 64 aa6.5□□□□□ -1.37
TRIM28-208ENST00000597172 NTM-AS1Q6ZSK4 140 aa6.5□□□□□ -1.37
TRIM28-208ENST00000597172 DAZ4Q86SG3 579 aaKnown RBP6.5□□□□□ -1.37
TRIM28-208ENST00000597172 ATP6V0E2Q8NHE4 81 aa6.5□□□□□ -1.37
TRIM28-208ENST00000597172 PRSS3P2Q8NHM4 247 aa6.5□□□□□ -1.37
TRIM28-208ENST00000597172 DAZ3Q9NR90 486 aaKnown RBP6.5□□□□□ -1.37
TRIM28-208ENST00000597172 ICOSQ9Y6W8 199 aa6.5□□□□□ -1.37
TRIM28-208ENST00000597172 TCAPO15273 167 aa6.49□□□□□ -1.37
TRIM28-208ENST00000597172 LINC00614P0C842 121 aa6.49□□□□□ -1.37
TRIM28-208ENST00000597172 PMCHP20382 165 aa6.49□□□□□ -1.37
TRIM28-208ENST00000597172 LYPD5Q6UWN5 251 aa6.49□□□□□ -1.37
TRIM28-208ENST00000597172 APLNQ9ULZ1 77 aa6.49□□□□□ -1.37
TRIM28-208ENST00000597172 EPM2AB3EWF7 344 aa6.48□□□□□ -1.37
TRIM28-208ENST00000597172 NDUFA6P56556 154 aa6.48□□□□□ -1.37
TRIM28-208ENST00000597172 RAB5BP61020 215 aa6.48□□□□□ -1.37
TRIM28-208ENST00000597172 ESRGQ1W209 222 aa6.48□□□□□ -1.37
TRIM28-208ENST00000597172 BAGE3Q86Y29 109 aa6.48□□□□□ -1.37
TRIM28-208ENST00000597172 C15orf53Q8NAA6 179 aa6.48□□□□□ -1.37
TRIM28-208ENST00000597172 GTSF1LQ9H1H1 148 aa6.48□□□□□ -1.37
TRIM28-208ENST00000597172 NXT2Q9NPJ8 142 aaKnown RBP6.48□□□□□ -1.37
TRIM28-208ENST00000597172 SERF1AO75920 110 aa6.47□□□□□ -1.37
TRIM28-208ENST00000597172 ESDP10768 282 aa6.47□□□□□ -1.37
TRIM28-208ENST00000597172 COA6Q5JTJ3 125 aaKnown RBP6.47□□□□□ -1.37
TRIM28-208ENST00000597172 SH2D6Q7Z4S9 175 aa6.47□□□□□ -1.37
TRIM28-208ENST00000597172 KIR2DL4Q99706 377 aa6.47□□□□□ -1.37
TRIM28-208ENST00000597172 CHCHD7Q9BUK0 85 aa6.47□□□□□ -1.37
TRIM28-208ENST00000597172 TRBV6-8A0A0A6YYG3 113 aa6.46□□□□□ -1.38
TRIM28-208ENST00000597172 TCTAP57738 103 aa6.46□□□□□ -1.38
TRIM28-208ENST00000597172 TIRAPP58753 221 aa6.46□□□□□ -1.38
TRIM28-208ENST00000597172 COTL1Q14019 142 aa6.46□□□□□ -1.38
TRIM28-208ENST00000597172 LAGE3Q14657 143 aa6.46□□□□□ -1.38
TRIM28-208ENST00000597172 RNASEKQ6P5S7 137 aaKnown RBP6.46□□□□□ -1.38
TRIM28-208ENST00000597172 FA2HQ7L5A8 372 aa6.46□□□□□ -1.38
TRIM28-208ENST00000597172 CHCHD1Q96BP2 118 aaKnown RBP6.46□□□□□ -1.38
TRIM28-208ENST00000597172 A0A096LNJ9 63 aa6.45□□□□□ -1.38
TRIM28-208ENST00000597172 K7EMI3 77 aa6.45□□□□□ -1.38
TRIM28-208ENST00000597172 FCER1GP30273 86 aa6.45□□□□□ -1.38
TRIM28-208ENST00000597172 PMCHL1Q16048 86 aa6.45□□□□□ -1.38
TRIM28-208ENST00000597172 AP5S1Q9NUS5 200 aa6.45□□□□□ -1.38
TRIM28-208ENST00000597172 VPS13BQ7Z7G8 4022 aa6.44□□□□□ -1.38
TRIM28-208ENST00000597172 J3QL48 77 aa6.44□□□□□ -1.38
TRIM28-208ENST00000597172 M0R2N4 97 aa6.44□□□□□ -1.38
TRIM28-208ENST00000597172 AMTP48728 403 aa6.44□□□□□ -1.38
TRIM28-208ENST00000597172 ORMDL2Q53FV1 153 aa6.44□□□□□ -1.38
TRIM28-208ENST00000597172 TMEM97Q5BJF2 176 aa6.44□□□□□ -1.38
TRIM28-208ENST00000597172 LELP1Q5T871 98 aa6.44□□□□□ -1.38
TRIM28-208ENST00000597172 FAM19A2Q8N3H0 131 aa6.44□□□□□ -1.38
TRIM28-208ENST00000597172 C20orf203Q8NBC4 194 aa6.44□□□□□ -1.38
TRIM28-208ENST00000597172 TMA7Q9Y2S6 64 aaKnown RBP6.44□□□□□ -1.38
TRIM28-208ENST00000597172 LINC00588Q9Y4M8 146 aa6.44□□□□□ -1.38
TRIM28-208ENST00000597172 RNF213Q63HN8 5207 aa6.44□□□□□ -1.38
TRIM28-208ENST00000597172 TRBV25-1A0A075B6N4 114 aa6.43□□□□□ -1.38
TRIM28-208ENST00000597172 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.43□□□□□ -1.38
TRIM28-208ENST00000597172 IGHV1-24A0A0C4DH33 117 aa6.43□□□□□ -1.38
TRIM28-208ENST00000597172 IGKV2-29A2NJV5 120 aaPredicted RBP6.43□□□□□ -1.38
TRIM28-208ENST00000597172 SNRPEP62304 92 aaKnown RBP6.43□□□□□ -1.38
TRIM28-208ENST00000597172 RPL39P62891 51 aaKnown RBP6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms